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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011185 ID=TCONS_00011185|Name=TCONS_00011185|organism=Clytia hemisphaerica|type=transcript|length=2193bp
CAAGCAAAGAGTCAACAATAAAAACGCAAAACTCCTATCACAACGTCaac
atgaaagatatttttcagAAAGTATCACCCGCCACGGGAAAACCTTCAAC
TGATATGACTAATATCCACAAAGAAATCACTATTGATAATCGCATCTTTT
TGAAAGGATTGAGATTGGACACTAAGGAAGaagatttggaaaatattttc
aaaacgtACGGAGCTATCGTTGAAACGAAAATTATTCGTGATAATTTTGA
TGGACGAAGCAAAGGTTTTGGATTTATCACTTTCGATAGTCAACAAGTTG
CACAAGATATTTTACGTGATGTCCAATCTATTCAAACTGATGATATGGAA
ATCACGATCGCACCCGCTAAAATGAAACGCCTTCCACCTCAAGGCAAATC
ATTCCGCAACCGACATGTCCCATTCTCACATCAGCCGATGCACCCGCAAC
AAAACTTTATCCCCGTCAACACTCCAATGGCTCCGCAATACTACTCCATG
CCTTGCGTTGTTTCACCAGACGGCTTGTTCACATGGTACCCCAACATCCC
AACCTACCAGCAGAAAACATATCCCGAAATCATCTACCCAGACGCTAACA
TGGACCCTAACCTCGTTCCCATGTTATCACCTCCTGACTCACCGAATTCA
TCCAACATTTCGAACGAAAACAAAACCAACAACTCTGTTGAATCAAACTC
CAATAATATCTACTCACCGACCAGCAAATACGACTCGAACAATTTCCAAC
CACTTCAACCTTTACCTCAAACACCTAATACGAACCAACAGTTGACTGAA
CTCACACCAACCATCATCAACAATCAAAACATGGTCGATAATCAACAAAA
CGAATTCAACAAATCGAACACTGGTTTACCACCAACAACTAATGCCGGTA
ATGGCGTCTTTCAAAATCTTCTACCATCTTCAACCGAGATTGTCCACCTC
AACAATGGCTACCTTTATCCGCAAAATGCATTTTTACCTCAAAACACCAA
CTTCGTTAACGCTTATCCTCACCCTCAGCCATTAGCGCCGCTCAATTCCA
CCAACAACAAATTGAAACCGTCTCCAATTTTCTTCAACGGCGTACCACTT
TATGATAACGCCCCAACTCCACCTTCAACGCCCACCACCCCTAATCCCCC
AATGGAAATCAACGTCATTACTTCAGACATGAAGAATTTGGTCGTTCAAC
CAAGTTTCCAACGCATCCACTTTATGATAACGCCCCAACTCCACCTTCAA
CGCCCACCACCCCTAATCCCCCAATGGAAATCAACGTCATTACTTCAGAC
ATGAAGAATTTGGTCGTTCAACCAAGTTTCCAACGCATCCACATTCCAGC
TCCCAACTCTACAGACCTGAAACCGGAAATCACAAACGCCACAAACGATA
ACACCGCCCCACCCTCTTTTCCATCGCCACCTGTCAAATCGCTGGGTAAC
AGCCTTCCAGCATATCCTACACCACCCACCAAAGTGGCACCGCCACCCCA
ACACGCCACAGAAGTGGTCAACAGCCAACAACAAAATGGTGATTCGATGC
CTttgaaaacacaaaattttgttttcatgtctacTGCGCCTGGTAAAGTC
AATCGCGTTGTCGTTCACTAATTTGAATGAATATTGATTTGGATTTAAAC
GGTACTGGAATCTGGATTTTATTTGATAACTTTTAAGATTTGATATGATT
TGATGTGTTTTGATGCTTTGAACTTTAAATTTTCTCTATATTAGAGAGTC
TTTATCCCTCAAATGAATGTAgacatttttattgaatttttttgggTTCC
TCTGTACAATCAACTTAATGTTTGTGCAGTGAGCTGTAATTTGTGTGTTA
TTTTTTGTATATAAGTTTACGTGCTGTGCtgtctttttattgaaaaaata
cacatttttatgaTGTGGTATttatttttaggattattttaTTTACCCAA
CCCCGATTTCTCGGGTACAcacttttttgtttataagaacaatttttttg
agaacaCCAGCCTCAGAACAATAgtaaattaagaacaatctgaggcTCAA
CcgaaatttactggttcttataaaaaaataagcgtGTAGAAGCTCATTTT
AGGAGTTTTATCATTTGTTTCGATTTTGGAAGTTGACCAAAACCTACTac
taaatttctttcaaaataaattcttcGAATTGATGAAAGCCCC Run BLAST on NCBI protein sequence of TCONS_00011185-protein >TCONS_00011185-protein ID=TCONS_00011185-protein|Name=TCONS_00011185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=433bp
SKESTIKTQNSYHNVNMKDIFQKVSPATGKPSTDMTNIHKEITIDNRIFL
KGLRLDTKEEDLENIFKTYGAIVETKIIRDNFDGRSKGFGFITFDSQQVA
QDILRDVQSIQTDDMEITIAPAKMKRLPPQGKSFRNRHVPFSHQPMHPQQ
NFIPVNTPMAPQYYSMPCVVSPDGLFTWYPNIPTYQQKTYPEIIYPDANM
DPNLVPMLSPPDSPNSSNISNENKTNNSVESNSNNIYSPTSKYDSNNFQP
LQPLPQTPNTNQQLTELTPTIINNQNMVDNQQNEFNKSNTGLPPTTNAGN
GVFQNLLPSSTEIVHLNNGYLYPQNAFLPQNTNFVNAYPHPQPLAPLNST
NNKLKPSPIFFNGVPLYDNAPTPPSTPTTPNPPMEINVITSDMKNLVVQP
SFQRIHFMITPQLHLQRPPPLIPQWKSTSLLQT Run BLAST on NCBI transcript from alignment at sc0000122:154430..158098+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011185 ID=TCONS_00011185|Name=TCONS_00011185|organism=Clytia hemisphaerica|type=transcript|length=3669bp|location=Sequence derived from alignment at sc0000122:154430..158098+ (Clytia hemisphaerica)
CAAGCAAAGAGTCAACAATAAAAACGCAAAACTCCTATCACAACGTCaac
atgaaagatatttttcagAAAGTATCACCCGCCACGGGAAAACCTTCAAC
TGATATGACTAATATCCACAAAGAAATCACTATTGATAATCGCATCTTTT
TGAAAGGATTGAGATTGGACACTAAGGAAGaagatttggaaaatattttc
aaaacgtACGGAGCTATCGTTGAAACGAAAATTATTCGTGATAATTTTGA
TGGACGAAGCAAAGGTTTTGGATTTATCACTTTCGATAGTCAACAAGTTG
CACAAGATATTTTACGTGATGTCCAATCTATTCAAACTGATGATATGGAA
ATCACGATCGCACCCGCTAAAATGAAACGCCTTCCACCTCAAGGTATAAA
TTTGTTTGttacctactctcgggtacctaatagccgggggggcccgaaaa
ttttccacccaggacattcttattccaaccccccgcttattgatttttgg
gaaaattttttttgaaagttccctcttttgccctaattctgctgtatcag
cctccttttcgaacattttccacccaggacatttttattccaaccccccg
cttattgatttttgggaaaattttttttgaaagttccctcttttgcccta
attctgctgcatcagcctccttttcgaacattttccacccaggacatttt
tattccaacccccccgcttattaaattttgagattttttccaacccccct
gcttattccaaaccccccggctattaggtacccgagagtatgccCTATGG
ATTTCTTTACAACTGATTAACTtccgtgaaaatgaataaaaaaaactttt
aaaaaatcaatGCGAATTTTTCAAACCTTTGTCTCGTTAAAATATCTCTT
TTGTGAGAAGTGTTTATCTTCTATATTGTGCACTACTTAAAGTCTCATGA
TTAACATAGAGTTAATGCTAGGAAGAACTATCAACAGATTGTTATACATT
CGTGGTGTTTAGAATTGTGATACGAATCATTTTCGAATTTGGAAGGTTTA
AATTGTTAGATTTAAATAATCAAATAATTACCGATCTATTTTTTTCAGGC
AAATCATTCCGCAACCGACATGTCCCATTCTCACATCAGCCGATGCACCC
GCAACAAAACTTTATCCCCGTCAACACTCCAATGGCTCCGCAATACTACT
CCATGCCTTGCGTTGTTTCACCAGACGGCTTGTTCACATGGTACCCCAAC
ATCCCAACCTACCAGCAGAAAACATATCCCGAAATCATCTACCCAGACGC
TAACATGGACCCTAACCTCGTTCCCATGTTATCACCTCCTGACTCACCGA
ATTCATCCAACATTTCGAACGAAAACAAAACCAACAACTCTGTTGAATCA
AACTCCAATAATATCTACTCACCGACCAGCAAATACGACTCGAACAATTT
CCAACCACTTCAACCTTTACCTCAAACACCTAATACGAACCAACAGTTGA
CTGAACTCACACCAACCATCATCAACAATCAAAACATGGTCGATAATCAA
CAAAACGAATTCAACAAATCGAACACTGGTTTACCACCAACAACTAATGC
CGGTAATGGCGTCTTTCAAAATCTTCTACCATCTTCAACCGAGATTGTCC
ACCTCAACAATGGCTACCTTTATCCGCAAAATGCATTTTTACCTCAAAAC
ACCAACTTCGTTAACGCTTATCCTCACCCTCAGCCATTAGCGCCGCTCAA
TTCCACCAACAACAAATTGAAACCGTCTCCAATTTTCTTCAACGGCGTAC
CACTTTATGATAACGCCCCAACTCCACCTTCAACGCCCACCACCCCTAAT
CCCCCAATGGAAATCAACGTCATTACTTCAGACATGAAGAATTTGGTCGT
TCAACCAAGTTTCCAACGCATCCACATTCCAGCTCCCAACTCTACAGACC
TGAAACCGGAAATCACAAACGCCACAAACGATAACACCGCCCCACCCTCT
TTTCCATCGCCACCTGTCAAATCGCTGGGTAACAGCCTTCCAGCATATCC
TACACCACCCACCAAAGTGGCACCGCCACCCCAACACGCCACAGAAGTGG
TCAACAGCCAACAACAAAATGGTGATTCGATGCCTttgaaaacacaaaat
tttgttttcatgtctacTGCGCCTGGTAAAGTCAATCGCGTTGTCGTTCA
CTAATTTGAATGAATATTGATTTGGATTTAAACGGTACTGGAATCTGGAT
TTTATTTGATAACTTTTAAGATTTGATATGATTTGATGTGTTTTGATNTA
ATAATATCTACTCACCGACCAGCAAATACGACTCGAACAATTTCCAACCA
CTTCAACCTTTACCTCAAACACCGAATACGAACCAACAGTTGACTGAACT
CACACCAACCATCATCAACAATCAAAACATGGTCGATAATCAACAAAACG
aattcaacaaatcaaacactGGTTTACCACCAACAACTAATGCCGGTAAT
AGCGTCTTTCAAAATCTTCTACCATCTTCAACCGAGATTGTCCACCTCAA
CAATGGCTACCTTTATCCGCAAAATGCATTTTTACCTCAAAACACCAACT
TCGTTAACGCTTATCCTCACCCTCAGCCATTAGCGCCGCTCAATTCCACC
AACAACAAATTGAAACCGTCTCCAATTTTCTTCAACGGCGTACCACTTTA
TGATAACGCCCCAACTCCACCTTCAACGCCCACCACCCCTAATCCCCCAA
TGGAAATCAACGTCATTACTTCAGACATGAAGAATTTGGTCGTTCAACCA
AGTTTCCAACGCATCCACATTCCAGCTCCCAACTCTACAGACCTGAAACC
GGAAATCACAAACGCCACAAACGATAACACCGCCCCACCCTCTTTTCCAT
CGCCACCTGTCAAATCGCTGGGTAACAGCCTTCCAGCATATCCTACACCA
CCCACCAAAGTGGCACCGCCACCCCAACACGCCACAGAAGTGGTCAACAG
CCAACAACAAAATGGTGATTCGATGCCTttgaaaacacaaaattttgttt
tcatgtctacTGCGCCTGGTAAAGTCAATCGCGTTGTCGTTCACTAATTT
GAATGAATATTGATTTGGATTTAAACGGTACTGGAATCTGGATTTTATTT
GATAACTTTTAAGATTTGATATGATTTGATGTGTTTTGATGCTTTGAACT
TTAAATTTTCTCTATATTAGAGAGTCTTTATCCCTCAAATGAATGTAgac
atttttattgaatttttttgggTTCCTCTGTACAATCAACTTAATGTTTG
TGCAGTGAGCTGTAATTTGTGTGTTATTTTTTGTATATAAGTTTACGTGC
TGTGCtgtctttttattgaaaaaatacacatttttatgaTGTGGTATtta
tttttaggattattttaTTTACCCAACCCCGATTTCTCGGGTACAcactt
ttttgtttataagaacaatttttttgagaacaCCAGCCTCAGAACAATAg
taaattaagaacaatctgaggcTCAACcgaaatttactggttcttataaa
aaaataagcgtGTAGAAGCTCATTTTAGGAGTTTTATCATTTGTTTCGAT
TTTGGAAGTTGACCAAAACCTACTactaaatttctttcaaaataaattct
tcGAATTGATGAAAGCCCC Coding sequence (CDS) from alignment at sc0000122:154430..158098+ >TCONS_00011185 ID=TCONS_00011185|Name=TCONS_00011185|organism=Clytia hemisphaerica|type=CDS|length=3906bp|location=Sequence derived from alignment at sc0000122:154430..158098+ (Clytia hemisphaerica)
AGCAAAGAGTCAACAATAAAAACGCAAAACTCCTATCACAACGTCaacat
gaaagatatttttcagAAAGTATCACCCGCCACGGGAAAACCTTCAACTG
ATATGACTAATATCCACAAAGAAATCACTATTGATAATCGCATCTTTTTG
AAAGGATTGAGATTGGACACTAAGGAAGaagatttggaaaatattttcaa
aacgtACGGAGCTATCGTTGAAACGAAAATTATTCGTGATAATTTTGATG
GACGAAGCAAAGGTTTTGGATTTATCACTTTCGATAGTCAACAAGTTGCA
CAAGATATTTTACGTGATGTCCAATCTATTCAAACTGATGATATGGAAAT
CACGATCGCACCCGCTAAAATGAAACGCCTTCCACCTCAAGGCAAATCAT
TCCGCAACCGACATGTCCCATTCTCACATCAGCCGATGCACCCGCAACAA
AACTTTATCCCCGTCAACACTCCAATGGCTCCGCAATACTACTCCATGCC
TTGCGTTGTTTCACCAGACGGCTTGTTCACATGGTACCCCAACATCCCAA
CCTACCAGCAGAAAACATATCCCGAAATCATCTACCCAGACGCTAACATG
GACCCTAACCTCGTTCCCATGTTATCACCTCCTGACTCACCGAATTCATC
CAACATTTCGAACGAAAACAAAACCAACAACTCTGTTGAATCAAACTCCA
ATAATATCTACTCACCGACCAGCAAATACGACTCGAACAATTTCCAACCA
CTTCAACCTTTACCTCAAACACCTAATACGAACCAACAGTTGACTGAACT
CACACCAACCATCATCAACAATCAAAACATGGTCGATAATCAACAAAACG
AATTCAACAAATCGAACACTGGTTTACCACCAACAACTAATGCCGGTAAT
GGCGTCTTTCAAAATCTTCTACCATCTTCAACCGAGATTGTCCACCTCAA
CAATGGCTACCTTTATCCGCAAAATGCATTTTTACCTCAAAACACCAACT
TCGTTAACGCTTATCCTCACCCTCAGCCATTAGCGCCGCTCAATTCCACC
AACAACAAATTGAAACCGTCTCCAATTTTCTTCAACGGCGTACCACTTTA
TGATAACGCCCCAACTCCACCTTCAACGCCCACCACCCCTAATCCCCCAA
TGGAAATCAACGTCATTACTTCAGACATGAAGAATTTGGTCGTTCAACCA
AGTTTCCAACGCATCCACTTTATGATAACGCCCCAACTCCACCTTCAACG
CCCACCACCCCTAATCCCCCAATGGAAATCAACGTCATTACTTCAGACAT
GAAGCAAAGAGTCAACAATAAAAACGCAAAACTCCTATCACAACGTCaac
atgaaagatatttttcagAAAGTATCACCCGCCACGGGAAAACCTTCAAC
TGATATGACTAATATCCACAAAGAAATCACTATTGATAATCGCATCTTTT
TGAAAGGATTGAGATTGGACACTAAGGAAGaagatttggaaaatattttc
aaaacgtACGGAGCTATCGTTGAAACGAAAATTATTCGTGATAATTTTGA
TGGACGAAGCAAAGGTTTTGGATTTATCACTTTCGATAGTCAACAAGTTG
CACAAGATATTTTACGTGATGTCCAATCTATTCAAACTGATGATATGGAA
ATCACGATCGCACCCGCTAAAATGAAACGCCTTCCACCTCAAGGCAAATC
ATTCCGCAACCGACATGTCCCATTCTCACATCAGCCGATGCACCCGCAAC
AAAACTTTATCCCCGTCAACACTCCAATGGCTCCGCAATACTACTCCATG
CCTTGCGTTGTTTCACCAGACGGCTTGTTCACATGGTACCCCAACATCCC
AACCTACCAGCAGAAAACATATCCCGAAATCATCTACCCAGACGCTAACA
TGGACCCTAACCTCGTTCCCATGTTATCACCTCCTGACTCACCGAATTCA
TCCAACATTTCGAACGAAAACAAAACCAACAACTCTGTTGAATCAAACTC
CAATAATATCTACTCACCGACCAGCAAATACGACTCGAACAATTTCCAAC
CACTTCAACCTTTACCTCAAACACCTAATACGAACCAACAGTTGACTGAA
CTCACACCAACCATCATCAACAATCAAAACATGGTCGATAATCAACAAAA
CGAATTCAACAAATCGAACACTGGTTTACCACCAACAACTAATGCCGGTA
ATGGCGTCTTTCAAAATCTTCTACCATCTTCAACCGAGATTGTCCACCTC
AACAATGGCTACCTTTATCCGCAAAATGCATTTTTACCTCAAAACACCAA
CTTCGTTAACGCTTATCCTCACCCTCAGCCATTAGCGCCGCTCAATTCCA
CCAACAACAAATTGAAACCGTCTCCAATTTTCTTCAACGGCGTACCACTT
TATGATAACGCCCCAACTCCACCTTCAACGCCCACCACCCCTAATCCCCC
AATGGAAATCAACGTCATTACTTCAGACATGAAGAATTTGGTCGTTCAAC
CAAGTTTCCAACGCATCCACTTTATGATAACGCCCCAACTCCACCTTCAA
CGCCCACCACCCCTAATCCCCCAATGGAAATCAACGTCATTACTTCAGAC
ATGAAGCAAAGAGTCAACAATAAAAACGCAAAACTCCTATCACAACGTCa
acatgaaagatatttttcagAAAGTATCACCCGCCACGGGAAAACCTTCA
ACTGATATGACTAATATCCACAAAGAAATCACTATTGATAATCGCATCTT
TTTGAAAGGATTGAGATTGGACACTAAGGAAGaagatttggaaaatattt
tcaaaacgtACGGAGCTATCGTTGAAACGAAAATTATTCGTGATAATTTT
GATGGACGAAGCAAAGGTTTTGGATTTATCACTTTCGATAGTCAACAAGT
TGCACAAGATATTTTACGTGATGTCCAATCTATTCAAACTGATGATATGG
AAATCACGATCGCACCCGCTAAAATGAAACGCCTTCCACCTCAAGGCAAA
TCATTCCGCAACCGACATGTCCCATTCTCACATCAGCCGATGCACCCGCA
ACAAAACTTTATCCCCGTCAACACTCCAATGGCTCCGCAATACTACTCCA
TGCCTTGCGTTGTTTCACCAGACGGCTTGTTCACATGGTACCCCAACATC
CCAACCTACCAGCAGAAAACATATCCCGAAATCATCTACCCAGACGCTAA
CATGGACCCTAACCTCGTTCCCATGTTATCACCTCCTGACTCACCGAATT
CATCCAACATTTCGAACGAAAACAAAACCAACAACTCTGTTGAATCAAAC
TCCAATAATATCTACTCACCGACCAGCAAATACGACTCGAACAATTTCCA
ACCACTTCAACCTTTACCTCAAACACCTAATACGAACCAACAGTTGACTG
AACTCACACCAACCATCATCAACAATCAAAACATGGTCGATAATCAACAA
AACGAATTCAACAAATCGAACACTGGTTTACCACCAACAACTAATGCCGG
TAATGGCGTCTTTCAAAATCTTCTACCATCTTCAACCGAGATTGTCCACC
TCAACAATGGCTACCTTTATCCGCAAAATGCATTTTTACCTCAAAACACC
AACTTCGTTAACGCTTATCCTCACCCTCAGCCATTAGCGCCGCTCAATTC
CACCAACAACAAATTGAAACCGTCTCCAATTTTCTTCAACGGCGTACCAC
TTTATGATAACGCCCCAACTCCACCTTCAACGCCCACCACCCCTAATCCC
CCAATGGAAATCAACGTCATTACTTCAGACATGAAGAATTTGGTCGTTCA
ACCAAGTTTCCAACGCATCCACTTTATGATAACGCCCCAACTCCACCTTC
AACGCCCACCACCCCTAATCCCCCAATGGAAATCAACGTCATTACTTCAG
ACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011185-exon-sc0000122-1491911889:154430..154822 | TCONS_00011185-exon-sc0000122-1491911889:154430..154822 | Clytia hemisphaerica | exon |
| TCONS_00011185-exon-sc0000122-1510915933:154430..154822 | TCONS_00011185-exon-sc0000122-1510915933:154430..154822 | Clytia hemisphaerica | exon |
| TCONS_00011185-exon-sc0000122-1575043694:154430..154822 | TCONS_00011185-exon-sc0000122-1575043694:154430..154822 | Clytia hemisphaerica | exon |
| TCONS_00011185-exon-sc0000122-1491911889:155528..156354 | TCONS_00011185-exon-sc0000122-1491911889:155528..156354 | Clytia hemisphaerica | exon |
| TCONS_00011185-exon-sc0000122-1510915933:155528..156354 | TCONS_00011185-exon-sc0000122-1510915933:155528..156354 | Clytia hemisphaerica | exon |
| TCONS_00011185-exon-sc0000122-1575043694:155528..156354 | TCONS_00011185-exon-sc0000122-1575043694:155528..156354 | Clytia hemisphaerica | exon |
| TCONS_00011185-exon-sc0000122-1491911889:157126..158098 | TCONS_00011185-exon-sc0000122-1491911889:157126..158098 | Clytia hemisphaerica | exon |
| TCONS_00011185-exon-sc0000122-1510915933:157126..158098 | TCONS_00011185-exon-sc0000122-1510915933:157126..158098 | Clytia hemisphaerica | exon |
| TCONS_00011185-exon-sc0000122-1575043694:157126..158098 | TCONS_00011185-exon-sc0000122-1575043694:157126..158098 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:154430..158098 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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