|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011184 ID=TCONS_00011184|Name=TCONS_00011184|organism=Clytia hemisphaerica|type=transcript|length=2326bp
TATACGTTCGATTTGAAAAACATTCGATTGAATAAAAGTGTTGCATGCCC
CCAATCGAATGTTTTCGAATTCGAACGTTTCACAAGGGTTCGTCTACACG
TCAAGGCCGTTTTTGTAGGTACAAAACATTGATATCATGTGAACCAGGCC
TTAGACTTGCATTCCAAAAGAATGAATGAAGACGTGATCACCTTTCTTTC
AATGATCATTTATTGAATGACAAGCAAAGAGTCAACAATAAAAACGCAAA
ACTCCTATCACAACGTCaacatgaaagatatttttcagAAAGTATCACCC
GCCACGGGAAAACCTTCAACTGATATGACTAATATCCACAAAGAAATCAC
TATTGATAATCGCATCTTTTTGAAAGGATTGAGATTGGACACTAAGGAAG
aagatttggaaaatattttcaaaacgtACGGAGCTATCGTTGAAACGAAA
ATTATTCGTGATAATTTTGATGGACGAAGCAAAGGTTTTGGATTTATCAC
TTTCGATAGTCAACAAGTTGCACAAGATATTTTACGTGATGTCCAATCTA
TTCAAACTGATGATATGGAAATCACGATCGCACCCGCTAAAATGAAACGC
CTTCCACCTCAAGGCAAATCATTCCGCAACCGACATGTCCCATTCTCACA
TCAGCCGATGCACCCGCAACAAAACTTTATCCCCGTCAACACTCCAATGG
CTCCGCAATACTACTCCATGCCTTGCGTTGTTTCACCAGACGGCTTGTTC
ACATGGTACCCCAACATCCCAACCTACCAGCAGAAAACATATCCCGAAAT
CATCTACCCAGACGCTAACATGGACCCTAACCTCGTTCCCATGTTATCAC
CTCCTGACTCACCGAATTCATCCAACATTTCGAACGAAAACAAAACCAAC
AACTCTGTTGAATCAAACTCCAATAATATCTACTCACCGACCAGCAAATA
CGACTCGAACAATTTCCAACCACTTCAACCTTTACCTCAAACACCTAATA
CGAACCAACAGTTGACTGAACTCACACCAACCATCATCAACAATCAAAAC
ATGGTCGATAACCAACCATCATCAACAATCAAAACATGGTCGATAATCAA
CAAAACGaattcaacaaatcaaacactGGTTTACCACCAACAACTAATGC
CGGTAATAGCGTCTTTCAAAATCTTCTACCATCTTCAACCGAGATTGTCC
ACCTCAACAATGGCTACCTTTATCCGCAAAATGCATTTTTACCTCAAAAC
ACCAACTTCGTTAACGCTTATCCTCACCCTCAGCCATTAGCGCCGCTCAA
TTCCACCAACAACAAATTGAAACCGTCTCCAATTTTCTTCAACGGCGTAC
CACTTTATGATAACGCCCCAACTCCACCTTCAACGCCCACCACCCCTAAT
CCCCCAATGGAAATCAACGTCATTACTTCAGACATGAAGAATTTGGTCGT
TCAACCAAGTTTCCAACGCATCCACATTCCAGCTCCCAACTCTACAGACC
TGAAACCGGAAATCACAAACGCCACAAACGATAACACCGCCCCACCCTCT
TTTCCATCGCCACCTGTCAAATCGCTGGGTAACAGCCTTCCAGCATATCC
TACACCACCCACCAAAGTGGCACCGCCACCCCAACACGCCACAGAAGTGG
TCAACAGCCAACAACAAAATGGTGATTCGATGCCTttgaaaacacaaaat
tttgttttcatgtctacTGCGCCTGGTAAAGTCAATCGCGTTGTCGTTCA
CTAATTTGAATGAATATTGATTTGGATTTAAACGGTACTGGAATCTGGAT
TTTATTTGATAACTTTTAAGATTTGATATGATTTGATGTGTTTTGATGCT
TTGAACTTTAAATTTTCTCTATATTAGAGAGTCTTTATCCCTCAAATGAA
TGTAgacatttttattgaatttttttgggTTCCTCTGTACAATCAACTTA
ATGTTTGTGCAGTGAGCTGTAATTTGTGTGTTATTTTTTGTATATAAGTT
TACGTGCTGTGCtgtctttttattgaaaaaatacacatttttatgaTGTG
GTATttatttttaggattattttaTTTACCCAACCCCGATTTCTCGGGTA
CAcacttttttgtttataagaacaatttttttgagaacaCCAGCCTCAGA
ACAATAgtaaattaagaacaatctgaggcTCAACcgaaatttactggttc
ttataaaaaaataagcgtGTAGAAGCTCATTTTAGGAGTTTTATCATTTG
TTTCGATTTTGGAAGTTGACCAAAACCTACTactaaatttctttcaaaat
aaattcttcGAATTGATGAAAGCCCC Run BLAST on NCBI transcript from alignment at sc0000122:154210..158098+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011184 ID=TCONS_00011184|Name=TCONS_00011184|organism=Clytia hemisphaerica|type=transcript|length=3889bp|location=Sequence derived from alignment at sc0000122:154210..158098+ (Clytia hemisphaerica)
TATACGTTCGATTTGAAAAACATTCGATTGAATAAAAGTGTTGCATGCCC
CCAATCGAATGTTTTCGAATTCGAACGTTTCACAAGGGTTCGTCTACACG
TCAAGGCCGTTTTTGTAGGTACAAAACATTGATATCATGTGAACCAGGCC
TTAGACTTGCATTCCAAAAGAATGAATGAAGACGTGATCACCTTTCTTTC
AATGATCATTTATTGAATGACAAGCAAAGAGTCAACAATAAAAACGCAAA
ACTCCTATCACAACGTCaacatgaaagatatttttcagAAAGTATCACCC
GCCACGGGAAAACCTTCAACTGATATGACTAATATCCACAAAGAAATCAC
TATTGATAATCGCATCTTTTTGAAAGGATTGAGATTGGACACTAAGGAAG
aagatttggaaaatattttcaaaacgtACGGAGCTATCGTTGAAACGAAA
ATTATTCGTGATAATTTTGATGGACGAAGCAAAGGTTTTGGATTTATCAC
TTTCGATAGTCAACAAGTTGCACAAGATATTTTACGTGATGTCCAATCTA
TTCAAACTGATGATATGGAAATCACGATCGCACCCGCTAAAATGAAACGC
CTTCCACCTCAAGGTATAAATTTGTTTGttacctactctcgggtacctaa
tagccgggggggcccgaaaattttccacccaggacattcttattccaacc
ccccgcttattgatttttgggaaaattttttttgaaagttccctcttttg
ccctaattctgctgtatcagcctccttttcgaacattttccacccaggac
atttttattccaaccccccgcttattgatttttgggaaaattttttttga
aagttccctcttttgccctaattctgctgcatcagcctccttttcgaaca
ttttccacccaggacatttttattccaacccccccgcttattaaattttg
agattttttccaacccccctgcttattccaaaccccccggctattaggta
cccgagagtatgccCTATGGATTTCTTTACAACTGATTAACTtccgtgaa
aatgaataaaaaaaacttttaaaaaatcaatGCGAATTTTTCAAACCTTT
GTCTCGTTAAAATATCTCTTTTGTGAGAAGTGTTTATCTTCTATATTGTG
CACTACTTAAAGTCTCATGATTAACATAGAGTTAATGCTAGGAAGAACTA
TCAACAGATTGTTATACATTCGTGGTGTTTAGAATTGTGATACGAATCAT
TTTCGAATTTGGAAGGTTTAAATTGTTAGATTTAAATAATCAAATAATTA
CCGATCTATTTTTTTCAGGCAAATCATTCCGCAACCGACATGTCCCATTC
TCACATCAGCCGATGCACCCGCAACAAAACTTTATCCCCGTCAACACTCC
AATGGCTCCGCAATACTACTCCATGCCTTGCGTTGTTTCACCAGACGGCT
TGTTCACATGGTACCCCAACATCCCAACCTACCAGCAGAAAACATATCCC
GAAATCATCTACCCAGACGCTAACATGGACCCTAACCTCGTTCCCATGTT
ATCACCTCCTGACTCACCGAATTCATCCAACATTTCGAACGAAAACAAAA
CCAACAACTCTGTTGAATCAAACTCCAATAATATCTACTCACCGACCAGC
AAATACGACTCGAACAATTTCCAACCACTTCAACCTTTACCTCAAACACC
TAATACGAACCAACAGTTGACTGAACTCACACCAACCATCATCAACAATC
AAAACATGGTCGATAATCAACAAAACGAATTCAACAAATCGAACACTGGT
TTACCACCAACAACTAATGCCGGTAATGGCGTCTTTCAAAATCTTCTACC
ATCTTCAACCGAGATTGTCCACCTCAACAATGGCTACCTTTATCCGCAAA
ATGCATTTTTACCTCAAAACACCAACTTCGTTAACGCTTATCCTCACCCT
CAGCCATTAGCGCCGCTCAATTCCACCAACAACAAATTGAAACCGTCTCC
AATTTTCTTCAACGGCGTACCACTTTATGATAACGCCCCAACTCCACCTT
CAACGCCCACCACCCCTAATCCCCCAATGGAAATCAACGTCATTACTTCA
GACATGAAGAATTTGGTCGTTCAACCAAGTTTCCAACGCATCCACATTCC
AGCTCCCAACTCTACAGACCTGAAACCGGAAATCACAAACGCCACAAACG
ATAACACCGCCCCACCCTCTTTTCCATCGCCACCTGTCAAATCGCTGGGT
AACAGCCTTCCAGCATATCCTACACCACCCACCAAAGTGGCACCGCCACC
CCAACACGCCACAGAAGTGGTCAACAGCCAACAACAAAATGGTGATTCGA
TGCCTttgaaaacacaaaattttgttttcatgtctacTGCGCCTGGTAAA
GTCAATCGCGTTGTCGTTCACTAATTTGAATGAATATTGATTTGGATTTA
AACGGTACTGGAATCTGGATTTTATTTGATAACTTTTAAGATTTGATATG
ATTTGATGTGTTTTGATNTAATAATATCTACTCACCGACCAGCAAATACG
ACTCGAACAATTTCCAACCACTTCAACCTTTACCTCAAACACCGAATACG
AACCAACAGTTGACTGAACTCACACCAACCATCATCAACAATCAAAACAT
GGTCGATAATCAACAAAACGaattcaacaaatcaaacactGGTTTACCAC
CAACAACTAATGCCGGTAATAGCGTCTTTCAAAATCTTCTACCATCTTCA
ACCGAGATTGTCCACCTCAACAATGGCTACCTTTATCCGCAAAATGCATT
TTTACCTCAAAACACCAACTTCGTTAACGCTTATCCTCACCCTCAGCCAT
TAGCGCCGCTCAATTCCACCAACAACAAATTGAAACCGTCTCCAATTTTC
TTCAACGGCGTACCACTTTATGATAACGCCCCAACTCCACCTTCAACGCC
CACCACCCCTAATCCCCCAATGGAAATCAACGTCATTACTTCAGACATGA
AGAATTTGGTCGTTCAACCAAGTTTCCAACGCATCCACATTCCAGCTCCC
AACTCTACAGACCTGAAACCGGAAATCACAAACGCCACAAACGATAACAC
CGCCCCACCCTCTTTTCCATCGCCACCTGTCAAATCGCTGGGTAACAGCC
TTCCAGCATATCCTACACCACCCACCAAAGTGGCACCGCCACCCCAACAC
GCCACAGAAGTGGTCAACAGCCAACAACAAAATGGTGATTCGATGCCTtt
gaaaacacaaaattttgttttcatgtctacTGCGCCTGGTAAAGTCAATC
GCGTTGTCGTTCACTAATTTGAATGAATATTGATTTGGATTTAAACGGTA
CTGGAATCTGGATTTTATTTGATAACTTTTAAGATTTGATATGATTTGAT
GTGTTTTGATGCTTTGAACTTTAAATTTTCTCTATATTAGAGAGTCTTTA
TCCCTCAAATGAATGTAgacatttttattgaatttttttgggTTCCTCTG
TACAATCAACTTAATGTTTGTGCAGTGAGCTGTAATTTGTGTGTTATTTT
TTGTATATAAGTTTACGTGCTGTGCtgtctttttattgaaaaaatacaca
tttttatgaTGTGGTATttatttttaggattattttaTTTACCCAACCCC
GATTTCTCGGGTACAcacttttttgtttataagaacaatttttttgagaa
caCCAGCCTCAGAACAATAgtaaattaagaacaatctgaggcTCAACcga
aatttactggttcttataaaaaaataagcgtGTAGAAGCTCATTTTAGGA
GTTTTATCATTTGTTTCGATTTTGGAAGTTGACCAAAACCTACTactaaa
tttctttcaaaataaattcttcGAATTGATGAAAGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011184-exon-sc0000122-1491911889:154210..154822 | TCONS_00011184-exon-sc0000122-1491911889:154210..154822 | Clytia hemisphaerica | exon |
| TCONS_00011184-exon-sc0000122-1510915933:154210..154822 | TCONS_00011184-exon-sc0000122-1510915933:154210..154822 | Clytia hemisphaerica | exon |
| TCONS_00011184-exon-sc0000122-1575043694:154210..154822 | TCONS_00011184-exon-sc0000122-1575043694:154210..154822 | Clytia hemisphaerica | exon |
| TCONS_00011184-exon-sc0000122-1491911889:155528..155974 | TCONS_00011184-exon-sc0000122-1491911889:155528..155974 | Clytia hemisphaerica | exon |
| TCONS_00011184-exon-sc0000122-1510915933:155528..155974 | TCONS_00011184-exon-sc0000122-1510915933:155528..155974 | Clytia hemisphaerica | exon |
| TCONS_00011184-exon-sc0000122-1575043694:155528..155974 | TCONS_00011184-exon-sc0000122-1575043694:155528..155974 | Clytia hemisphaerica | exon |
| TCONS_00011184-exon-sc0000122-1491911889:156833..158098 | TCONS_00011184-exon-sc0000122-1491911889:156833..158098 | Clytia hemisphaerica | exon |
| TCONS_00011184-exon-sc0000122-1510915933:156833..158098 | TCONS_00011184-exon-sc0000122-1510915933:156833..158098 | Clytia hemisphaerica | exon |
| TCONS_00011184-exon-sc0000122-1575043694:156833..158098 | TCONS_00011184-exon-sc0000122-1575043694:156833..158098 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:154210..158098 + |
Blast
The following BLAST results are available for this feature:
|
