TCONS_00011183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011183
Unique NameTCONS_00011183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011183 ID=TCONS_00011183|Name=TCONS_00011183|organism=Clytia hemisphaerica|type=transcript|length=3321bp
TGGATAGCAAGTTTTGAAGGTTGTTTTGGATTTCAAGactgagatttttt
ttcgctCGTGTGTTTTTATTGACTTATGGTCACGTGTCAGAGAGTGGTTA
AGAGATTGGTTTCAGCTGGTGTTTGTAGCTTATGACGTATACGTTCGATT
TGAAAAACATTCGATTGAATAAAAGTGTTGCATGCCCCCAATCGAATGTT
TTCGAATTCGAACGTTTCACAAGGGTTCGTCTACACGTCAAGGCCGTTTT
TGTAGGTACAAAACATTGATATCATGTGAACCAGGCCTTAGACTTGCATT
CCAAAAGAATGAATGAAGACGTGATCACCTTTCTTTCAATGATCATTTAT
TGAATGACAAGCAAAGAGTCAACAATAAAAACGCAAAACTCCTATCACAA
CGTCaacatgaaagatatttttcagAAAGTATCACCCGCCACGGGAAAAC
CTTCAACTGATATGACTAATATCCACAAAGAAATCACTATTGATAATCGC
ATCTTTTTGAAAGGATTGAGATTGGACACTAAGGAAGaagatttggaaaa
tattttcaaaacgtACGGAGCTATCGTTGAAACGAAAATTATTCGTGATA
ATTTTGATGGACGAAGCAAAGGTTTTGGATTTATCACTTTCGATAGTCAA
CAAGTTGCACAAGATATTTTACGTGATGTCCAATCTATTCAAACTGATGA
TATGGAAATCACGATCGCACCCGCTAAAATGAAACGCCTTCCACCTCAAG
GCAAATCATTCCGCAACCGACATGTCCCATTCTCACATCAGCCGATGCAC
CCGCAACAAAACTTTATCCCCGTCAACACTCCAATGGCTCCGCAATACTA
CTCCATGCCTTGCGTTGTTTCACCAGACGGCTTGTTCACATGGTACCCCA
ACATCCCAACCTACCAGCAGAAAACATATCCCGAAATCATCTACCCAGAC
GCTAACATGGACCCTAACCTCGTTCCCATGTTATCACCTCCTGACTCACC
GAATTCATCCAACATTTCGAACGAAAACAAAACCAACAACTCTGTTGAAT
CAAACTCCAATAATATCTACTCACCGACCAGCAAATACGACTCGAACAAT
TTCCAACCACTTCAACCTTTACCTCAAACACCTAATACGAACCAACAGTT
GACTGAACTCACACCAACCATCATCAACAATCAAAACATGGTCGATAATC
AACAAAACGAATTCAACAAATCGAACACTGGTTTACCACCAACAACTAAT
GCCGGTAATGGCGTCTTTCAAAATCTTCTACCATCTTCAACCGAGATTGT
CCACCTCAACAATGGCTACCTTTATCCGCAAAATGCATTTTTACCTCAAA
ACACCAACTTCGTTAACGCTTATCCTCACCCTCAGCCATTAGCGCCGCTC
AATTCCACCAACAACAAATTGAAACCGTCTCCAATTTTCTTCAACGGCGT
ACCACTTTATGATAACGCCCCAACTCCACCTTCAACGCCCACCACCCCTA
ATCCCCCAATGGAAATCAACGTCATTACTTCAGACATGAAGAATTTGGTC
GTTCAACCAAGTTTCCAACGCATCCACATTCCAGCTCCCAACTCTACAGA
CCTGAAACCGGAAATCACAAACGCCACAAACGATAACACCGCCCCACCCT
CTTTTCCATCGCCACCTGTCAAATCGCTGGGTAACAGCCTTCCAGCATAT
CCTACACCACCCACCAAAGTGGCACCGCCACCCCAACACGCCACAGAAGT
GGTCAACAGCCAACAACAAAATGGTGATTCGATGCCTttgaaaacacaaa
attttgttttcatgtctacTGCGCCTGGTAAAGTCAATCGCGTTGTCGTT
CACTAATTTGAATGAATATTGATTTGGATTTAAACGGTACTGGAATCTGG
ATTTTATTTGATAACTTTTAAGATTTGATATGATTTGATGTGTTTTGATN
TAATAATATCTACTCACCGACCAGCAAATACGACTCGAACAATTTCCAAC
CACTTCAACCTTTACCTCAAACACCGAATACGAACCAACAGTTGACTGAA
CTCACACCAACCATCATCAACAATCAAAACATGGTCGATAATCAACAAAA
CGaattcaacaaatcaaacactGGTTTACCACCAACAACTAATGCCGGTA
ATAGCGTCTTTCAAAATCTTCTACCATCTTCAACCGAGATTGTCCACCTC
AACAATGGCTACCTTTATCCGCAAAATGCATTTTTACCTCAAAACACCAA
CTTCGTTAACGCTTATCCTCACCCTCAGCCATTAGCGCCGCTCAATTCCA
CCAACAACAAATTGAAACCGTCTCCAATTTTCTTCAACGGCGTACCACTT
TATGATAACGCCCCAACTCCACCTTCAACGCCCACCACCCCTAATCCCCC
AATGGAAATCAACGTCATTACTTCAGACATGAAGAATTTGGTCGTTCAAC
CAAGTTTCCAACGCATCCACATTCCAGCTCCCAACTCTACAGACCTGAAA
CCGGAAATCACAAACGCCACAAACGATAACACCGCCCCACCCTCTTTTCC
ATCGCCACCTGTCAAATCGCTGGGTAACAGCCTTCCAGCATATCCTACAC
CACCCACCAAAGTGGCACCGCCACCCCAACACGCCACAGAAGTGGTCAAC
AGCCAACAACAAAATGGTGATTCGATGCCTttgaaaacacaaaattttgt
tttcatgtctacTGCGCCTGGTAAAGTCAATCGCGTTGTCGTTCACTAAT
TTGAATGAATATTGATTTGGATTTAAACGGTACTGGAATCTGGATTTTAT
TTGATAACTTTTAAGATTTGATATGATTTGATGTGTTTTGATGCTTTGAA
CTTTAAATTTTCTCTATATTAGAGAGTCTTTATCCCTCAAATGAATGTAg
acatttttattgaatttttttgggTTCCTCTGTACAATCAACTTAATGTT
TGTGCAGTGAGCTGTAATTTGTGTGTTATTTTTTGTATATAAGTTTACGT
GCTGTGCtgtctttttattgaaaaaatacacatttttatgaTGTGGTATt
tatttttaggattattttaTTTACCCAACCCCGATTTCTCGGGTACAcac
ttttttgtttataagaacaatttttttgagaacaCCAGCCTCAGAACAAT
AgtaaattaagaacaatctgaggcTCAACcgaaatttactggttcttata
aaaaaataagcgtGTAGAAGCTCATTTTAGGAGTTTTATCATTTGTTTCG
ATTTTGGAAGTTGACCAAAACCTACTactaaatttctttcaaaataaatt
cttcGAATTGATGAAAGCCCC
Run BLAST on NCBI

transcript from alignment at sc0000122:154073..158098+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011183 ID=TCONS_00011183|Name=TCONS_00011183|organism=Clytia hemisphaerica|type=transcript|length=4026bp|location=Sequence derived from alignment at sc0000122:154073..158098+ (Clytia hemisphaerica)
TGGATAGCAAGTTTTGAAGGTTGTTTTGGATTTCAAGactgagatttttt
ttcgctCGTGTGTTTTTATTGACTTATGGTCACGTGTCAGAGAGTGGTTA
AGAGATTGGTTTCAGCTGGTGTTTGTAGCTTATGACGTATACGTTCGATT
TGAAAAACATTCGATTGAATAAAAGTGTTGCATGCCCCCAATCGAATGTT
TTCGAATTCGAACGTTTCACAAGGGTTCGTCTACACGTCAAGGCCGTTTT
TGTAGGTACAAAACATTGATATCATGTGAACCAGGCCTTAGACTTGCATT
CCAAAAGAATGAATGAAGACGTGATCACCTTTCTTTCAATGATCATTTAT
TGAATGACAAGCAAAGAGTCAACAATAAAAACGCAAAACTCCTATCACAA
CGTCaacatgaaagatatttttcagAAAGTATCACCCGCCACGGGAAAAC
CTTCAACTGATATGACTAATATCCACAAAGAAATCACTATTGATAATCGC
ATCTTTTTGAAAGGATTGAGATTGGACACTAAGGAAGaagatttggaaaa
tattttcaaaacgtACGGAGCTATCGTTGAAACGAAAATTATTCGTGATA
ATTTTGATGGACGAAGCAAAGGTTTTGGATTTATCACTTTCGATAGTCAA
CAAGTTGCACAAGATATTTTACGTGATGTCCAATCTATTCAAACTGATGA
TATGGAAATCACGATCGCACCCGCTAAAATGAAACGCCTTCCACCTCAAG
GTATAAATTTGTTTGttacctactctcgggtacctaatagccgggggggc
ccgaaaattttccacccaggacattcttattccaaccccccgcttattga
tttttgggaaaattttttttgaaagttccctcttttgccctaattctgct
gtatcagcctccttttcgaacattttccacccaggacatttttattccaa
ccccccgcttattgatttttgggaaaattttttttgaaagttccctcttt
tgccctaattctgctgcatcagcctccttttcgaacattttccacccagg
acatttttattccaacccccccgcttattaaattttgagattttttccaa
cccccctgcttattccaaaccccccggctattaggtacccgagagtatgc
cCTATGGATTTCTTTACAACTGATTAACTtccgtgaaaatgaataaaaaa
aacttttaaaaaatcaatGCGAATTTTTCAAACCTTTGTCTCGTTAAAAT
ATCTCTTTTGTGAGAAGTGTTTATCTTCTATATTGTGCACTACTTAAAGT
CTCATGATTAACATAGAGTTAATGCTAGGAAGAACTATCAACAGATTGTT
ATACATTCGTGGTGTTTAGAATTGTGATACGAATCATTTTCGAATTTGGA
AGGTTTAAATTGTTAGATTTAAATAATCAAATAATTACCGATCTATTTTT
TTCAGGCAAATCATTCCGCAACCGACATGTCCCATTCTCACATCAGCCGA
TGCACCCGCAACAAAACTTTATCCCCGTCAACACTCCAATGGCTCCGCAA
TACTACTCCATGCCTTGCGTTGTTTCACCAGACGGCTTGTTCACATGGTA
CCCCAACATCCCAACCTACCAGCAGAAAACATATCCCGAAATCATCTACC
CAGACGCTAACATGGACCCTAACCTCGTTCCCATGTTATCACCTCCTGAC
TCACCGAATTCATCCAACATTTCGAACGAAAACAAAACCAACAACTCTGT
TGAATCAAACTCCAATAATATCTACTCACCGACCAGCAAATACGACTCGA
ACAATTTCCAACCACTTCAACCTTTACCTCAAACACCTAATACGAACCAA
CAGTTGACTGAACTCACACCAACCATCATCAACAATCAAAACATGGTCGA
TAATCAACAAAACGAATTCAACAAATCGAACACTGGTTTACCACCAACAA
CTAATGCCGGTAATGGCGTCTTTCAAAATCTTCTACCATCTTCAACCGAG
ATTGTCCACCTCAACAATGGCTACCTTTATCCGCAAAATGCATTTTTACC
TCAAAACACCAACTTCGTTAACGCTTATCCTCACCCTCAGCCATTAGCGC
CGCTCAATTCCACCAACAACAAATTGAAACCGTCTCCAATTTTCTTCAAC
GGCGTACCACTTTATGATAACGCCCCAACTCCACCTTCAACGCCCACCAC
CCCTAATCCCCCAATGGAAATCAACGTCATTACTTCAGACATGAAGAATT
TGGTCGTTCAACCAAGTTTCCAACGCATCCACATTCCAGCTCCCAACTCT
ACAGACCTGAAACCGGAAATCACAAACGCCACAAACGATAACACCGCCCC
ACCCTCTTTTCCATCGCCACCTGTCAAATCGCTGGGTAACAGCCTTCCAG
CATATCCTACACCACCCACCAAAGTGGCACCGCCACCCCAACACGCCACA
GAAGTGGTCAACAGCCAACAACAAAATGGTGATTCGATGCCTttgaaaac
acaaaattttgttttcatgtctacTGCGCCTGGTAAAGTCAATCGCGTTG
TCGTTCACTAATTTGAATGAATATTGATTTGGATTTAAACGGTACTGGAA
TCTGGATTTTATTTGATAACTTTTAAGATTTGATATGATTTGATGTGTTT
TGATNTAATAATATCTACTCACCGACCAGCAAATACGACTCGAACAATTT
CCAACCACTTCAACCTTTACCTCAAACACCGAATACGAACCAACAGTTGA
CTGAACTCACACCAACCATCATCAACAATCAAAACATGGTCGATAATCAA
CAAAACGaattcaacaaatcaaacactGGTTTACCACCAACAACTAATGC
CGGTAATAGCGTCTTTCAAAATCTTCTACCATCTTCAACCGAGATTGTCC
ACCTCAACAATGGCTACCTTTATCCGCAAAATGCATTTTTACCTCAAAAC
ACCAACTTCGTTAACGCTTATCCTCACCCTCAGCCATTAGCGCCGCTCAA
TTCCACCAACAACAAATTGAAACCGTCTCCAATTTTCTTCAACGGCGTAC
CACTTTATGATAACGCCCCAACTCCACCTTCAACGCCCACCACCCCTAAT
CCCCCAATGGAAATCAACGTCATTACTTCAGACATGAAGAATTTGGTCGT
TCAACCAAGTTTCCAACGCATCCACATTCCAGCTCCCAACTCTACAGACC
TGAAACCGGAAATCACAAACGCCACAAACGATAACACCGCCCCACCCTCT
TTTCCATCGCCACCTGTCAAATCGCTGGGTAACAGCCTTCCAGCATATCC
TACACCACCCACCAAAGTGGCACCGCCACCCCAACACGCCACAGAAGTGG
TCAACAGCCAACAACAAAATGGTGATTCGATGCCTttgaaaacacaaaat
tttgttttcatgtctacTGCGCCTGGTAAAGTCAATCGCGTTGTCGTTCA
CTAATTTGAATGAATATTGATTTGGATTTAAACGGTACTGGAATCTGGAT
TTTATTTGATAACTTTTAAGATTTGATATGATTTGATGTGTTTTGATGCT
TTGAACTTTAAATTTTCTCTATATTAGAGAGTCTTTATCCCTCAAATGAA
TGTAgacatttttattgaatttttttgggTTCCTCTGTACAATCAACTTA
ATGTTTGTGCAGTGAGCTGTAATTTGTGTGTTATTTTTTGTATATAAGTT
TACGTGCTGTGCtgtctttttattgaaaaaatacacatttttatgaTGTG
GTATttatttttaggattattttaTTTACCCAACCCCGATTTCTCGGGTA
CAcacttttttgtttataagaacaatttttttgagaacaCCAGCCTCAGA
ACAATAgtaaattaagaacaatctgaggcTCAACcgaaatttactggttc
ttataaaaaaataagcgtGTAGAAGCTCATTTTAGGAGTTTTATCATTTG
TTTCGATTTTGGAAGTTGACCAAAACCTACTactaaatttctttcaaaat
aaattcttcGAATTGATGAAAGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006266XLOC_006266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011183-exon-sc0000122-1491911889:154073..154822TCONS_00011183-exon-sc0000122-1491911889:154073..154822Clytia hemisphaericaexon
TCONS_00011183-exon-sc0000122-1510915933:154073..154822TCONS_00011183-exon-sc0000122-1510915933:154073..154822Clytia hemisphaericaexon
TCONS_00011183-exon-sc0000122-1575043694:154073..154822TCONS_00011183-exon-sc0000122-1575043694:154073..154822Clytia hemisphaericaexon
TCONS_00011183-exon-sc0000122-1491911889:155528..158098TCONS_00011183-exon-sc0000122-1491911889:155528..158098Clytia hemisphaericaexon
TCONS_00011183-exon-sc0000122-1510915933:155528..158098TCONS_00011183-exon-sc0000122-1510915933:155528..158098Clytia hemisphaericaexon
TCONS_00011183-exon-sc0000122-1575043694:155528..158098TCONS_00011183-exon-sc0000122-1575043694:155528..158098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:154073..158098 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0314519	0.0306706	0	0.0710665	0	0.198082	0	0	0.0447501	0.0367447	0.0426164	0.0289955	0.0284059	0.0538181	0.0836901	0.0344713	0	0.109741	0	0	0.0453698	0.194036	0	0.0470883	0	0.281343	0.0729526	0.0521783	0	0.116027
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top