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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011182 ID=TCONS_00011182|Name=TCONS_00011182|organism=Clytia hemisphaerica|type=transcript|length=590bp
TCTTTCAGTGATaacaaaaaatggtaaatttaaCACAACAATTTTTGGCG
AGAAGACAAACAATTATCTATGGtgtgaaaagaggaaaaataccTCTAGC
CTTGAGGCCAACTGTGCCACCGCAGACCAAGCAAGCAGGAAATCCAACGT
GTCTTGATGAGATGTCTCGTTTATTCAACTGTTGGTCTGCTTCATCGTTC
GAAGATGGCAAATGTGGTAAAGAAATTGCCAACTTTTTAACTTGTGCTGA
TAAATCGCTTGCTGACTACCATAAAAGCGGACGTGGAAAGAAAACTGAAT
GGAATACAGAAAAATTAAATGAACTTATTCGAACACATACTGTTGTGAAA
AAGCGTGGACCTAAAGAGAAACAAGTTTTTCTTAATCAAATTATCAAATG
ATTATTTGTATAAACCCTGGTAAAATGTAAGAGAGTTTGTAAACAACCTG
AAATCTTAAATTTGAGTAATCATCATTGTGCATTTGGAATATGTGGTTGT
TGGCTTTCTTTGTACATGAAATTGATACCCAGTGTAAAGCTGCTTTATCA
CAATAATATAATCAAAGAATAGTCGAAAGTACACACAGAA Run BLAST on NCBI protein sequence of TCONS_00011182-protein >TCONS_00011182-protein ID=TCONS_00011182-protein|Name=TCONS_00011182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MVNLTQQFLARRQTIIYGVKRGKIPLALRPTVPPQTKQAGNPTCLDEMSR
LFNCWSASSFEDGKCGKEIANFLTCADKSLADYHKSGRGKKTEWNTEKLN
ELIRTHTVVKKRGPKEKQVFLNQIIK Run BLAST on NCBI transcript from alignment at sc0000122:145073..153359+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011182 ID=TCONS_00011182|Name=TCONS_00011182|organism=Clytia hemisphaerica|type=transcript|length=8287bp|location=Sequence derived from alignment at sc0000122:145073..153359+ (Clytia hemisphaerica)
TCTTTCAGTGATaacaaaaaatggtaaatttaaCACAACAATTTTTGGCG
AGAAGACAAACAATTATCTATGGtgtgaaaagaggaaaaataccTCTAGC
CTTGAGGCCAACTGTGCCACCGCAGACCAAGCAAGCAGGAAGTGAGTTTA
GCTTTTATTTGAGAGATCGAAACGAAAACTAAACATTTTTCGGGTTTTCG
AACCTTTTTGGACTTcgattgaaagaaaaacaaccatCTCAGGTTGAATG
GAGTGGACAAAAATCAATTATGATTTTGAACTTACATTTAGTCAGTTGGC
ATGGTagctttttttttgttaataagTGCTAGCGTTAGGGCTTCTTTTTT
CACACTGATTTGGCTTGGGACCTATTAATCCGAATTAATCTAAGAGTTGC
AAAAAAACGAATCAGCTATCTGAACAAAATCAACGTGAAATCTCTAGGGA
AGGCTCGATTATTCATATCAAAACtcgatttttcatgttttaaatttgtt
attttttcccCACGAATAATTTTAACTGAGACAAGTTTTAGCTTTTTGCT
CCAGATAATTTTAACCTAGGCAAGTCCGAACTTTCCATGGAACAAATTTC
TGGAGATGTTTTCCCGGAATGTGTAGGAACGGTCACACAGCCTTTGCTAT
TATctagtttatgtatcggaggatgtcgagggcgacggtaagtaaaatcg
atacaaaacaaagttgatagttgatgtacggctctatatcgtcTTTGTTC
ACCTAAATAGACGacagtattttggtgtttttaccgtcgtcgagcaaagt
ggacggtgattttggagacatattaactttgctttataccgtccccctcg
tagactggagtcgtttataatgcgtgtaatactaataataccaatactaa
taataataatacgggatttagtttgtataaacgactggaagaatccggtg
ttccaggcTTATAGATACCccgcctagctacgcagaaacttgcgtagcga
gaaaacaatttatcaagcaacaacaaactctcaaaacgaaatcaactcaa
atgaaaaactttcaatacacaaatccacNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtgcacaaaggtttctaga
cgactaaaattgttccattcattactttttgctttatttctactatgtat
aaattagtcgtctagcttgctagactatccccctcgatttatctcgaata
cataaactcgcgagtaccttatcggggaaaacttcgtcggggaaaagtga
cgaaattttggaaaagggacgaatattttccccgacgaaaattttccccg
gccttaatgcgtttaccaactaccagcaagtgacgaatttttccctgacg
agaattttccccgataaggtatcatCTAGTAACATTAATCGAGACACTAA
TAACTAATTATTTCTGCTGATTGAATTTTAGATCCAACGTGTCTTGATGA
GATGTCTCGTTTATTCAACTGTTGGTCTGCTTCATCGTTCGAAGATGGCA
AATGTGGTAAAGAAATTGCCAACTTTTTAACTTGTGCTGATAAATCGGTA
AGCACTAGATTTCAAAACAATCGTATgcgtaccttaagggaagaaacttT
TGCGGAAATTAATTTCGcagttttttgacaaatccgcGAAACTAAATCCC
GCAAAACACGaattctcaggatttaaaaaaatcacctctaaaattggTCT
ATTTAGGGCGAAATAGGCAATATTGTAACAAAAGAATTCTCTCAAGCAcg
gaaatttcttcccttaaattAAAGTATGTCATTTTTTGTAGCAGACTTTA
AAGTGGAAAGCcctaagtggattaattttcgcctggaattttttttcgcg
aattGAGAATCCAAATTAATTACACGGACAAAATTTCGCAAATCGGACTT
TTCTTTCAtcgtttttggccaaaattcggattttgaatatttcgcgacga
caaattttcgcgaaaatggccaaaattcacgaaaattaaTTCACGCGAAA
TTCAAGGTAAAACATTGCCCATTTGTAGGAGATTTTAGAGTGGGTAAAAC
ATGGAACCCATCCATGAAGTACTCCATTGTTGTACCTATTGGAGTACCCT
AAATAATTCACAGGCCAGAATAGAAAACTTGTTATTTGAATATCAACGAC
CAACAATGAAACTTATAAATGTCAATTCTTCAAAGTGTAACTAGAGTTTT
TTGTGATATTGCTTTAAGCATGCTTTTATTTCCAAGTGAGTTTTATTCTT
TGCAGATATCATATTTTGAGAATGTAACATTATTTTAATAGATGATCATA
TTGTCTATGGCAAGCGAAAATcacaatttcgagaaaaactagGTTTTTCT
GCCAAAAACCTGGTTTTTCGGGTGAAAACCCTAGTATTTCTAAAGGAGAC
ACAAGACCtcagaaaattcaagttttttgATAGAACATGTCTCCTTTGCT
CAATGTTGTTTTGATGAATTACTAAAAGACAAGAAATCTCGGTTGACGAG
AGATaagatttggaaatacttatagaacgacaaaaaagacgggggtaatt
ttattataatatgggtaaaattgccccttttttaacctgactgaaattcg
agccgttactagcaaccctgcggggcccaaggcgccgagtatgcacccgg
cacagtgacaagccgttactagcaacgctgacctaagcaattccaaacaa
caaaacccccggaaaatttaaaatgtcggaatgagcaatagacaaacATA
ACCTTgaatttctggaaaaaaaagaCCAATACGCTTCTTTTCAGAAAATC
TAATTTACTTATTCGAATTTTACGGCAGACGATTTTTCGATATTAAAAGC
GACCATTTAAAAGTGCGATTGACAAACCTGAGTTTTCTCTTGAAAATTTA
TAAGCTCCGGGAAAACCGGGAAAACcccttcttaggggcatcctTACCCT
GAGACCTaaccttgtaggggcaccggtagagttgggagctttcttaataa
aggtctgtaaattacacgctataagtatttgtgaatgaaagTTTTTGTCT
TGTCTCGTTGGCGcaagcggttaggcattgggtttgtaaaccaaggttgc
ttacatttggtggttcgagccggggttgGAGACCAATTCACTGGTACggg
aaaatttcagaaaaatacttagaaaacagttagaaacgcTTGAGAAAGTC
ATAGAAAATCttgatagaagataggaaagttgaaaatagggggaaaataa
aagggatgcatcctggtggatgatatcgtttgccaaccgaACAGTTTAGG
AGGcggaataaatttgaaaacggtgATTAGCCCGgggcggaggtgtttac
agtgtttacttcgaataaccgggagtttGAATAACTAAAAATATCCGTTT
TCCCTGTCAGAGCGCTAGACGATTTTACCGCTGGGATTTTACAGGGAAAA
TGAAAGATTTCTAAAATCTGATATCTCGTGTGTTTTCATGTTCTGGAATC
AATTGATTTAAATCTTCCAATATCATTAATTCTGTTATTTCAAGCTTCTA
GGGCATAAAAAAGGGTactccatgttttacaacgacccCTTCAGAGAACG
TGtttaaaattcatgatatgcatgcACCACGCACCACTGGAGAGTTTTCc
gagaacttttaaaaattttcacccaatacgtcacttaaacaatagaaaaa
gtgacgtattgggtggaataaaaacagaaaagttgcataatttcgtgaag
tcattgcagtggtgcatatcatggaaTGTATGGTATGGAAAATCGAATTT
ATGTAATATAACAAATTGATGACATTATTTTGCATATTAcataaaaagta
atacatgatGTTATAGCAGTTTATTAATACATAATAAGAATATCAATAAT
AGCATCTTGTACGATGGATCTGAGGGAGAATTTCCTCTCCATTTCAAATT
CTCTTTTCcttttaaaacaaacaataggttctattgtttaacaaaaggag
aagtgaatttcaaaaggagaatttttttcaccttttgtcaaaaggagaat
tattttcaccttttgtcaaaaggagaattattttcaccttttgtcaaaag
gagaattttttgcACCCTTtgtcaaaaggaaaatttttttatcgcctgga
ttttggatttttagacGAGTCATGCATTTTAACCTTGAATTTTAACCTTA
ACCTTAATCGTGAGTTGATGAGGAAAAGTTTAGTATTTCCCGTTGTCTTC
GGACAAACTTTAATCTGGCATATACTAAAAGACGGATCGATGGATCAACG
GATCGACGGATTACTAAAACACGGATCTGAAGGCGTTTGTACGAAAACCA
TGCGGGCCGCGCAACTTATGTAGAAAACAATTTGCTTCAAATTCTATATA
GGAGGTTCACTACTATCATTCGGCTTTACTTCATTTTTCCCTCCTCACTC
TAAATGCGGTCCGTTTTGTTTTTGGGAAATCTAATAAAGGTTATCATGTC
ATGGCCTGGCTATTAGCTAGTACTGTTCATATTCAACACGAATGATTGTC
CACACACGTGTGCATTCCCTTAGAANTTTCATTAAAAGGAacggagaaat
tttgaaaaagagaataaaaccGCTTTCAGAGCCATCGTAATCTTGCCTGT
TTGTTTGTTTCCCCCATCATAGAGGCTCCCCaagcggtaactctgatcac
gatatcaagCAATTTTTGGTCTTCAATTTGGACTTGGATGATCaggcatc
cctttgaaaaaagtccaaatcacgtcaCGTATCACTATTTaaagatcttt
caaatcacgataacgttttgacctctgatcacgtaatcaagaaaaaaaag
gtTCAAATCACGTAAATCACGCTATTGAAAAGTACCAagaaaccattaaa
aagcaaaggAATTGAGTCCGGTCACAAATTCTTGAAATctttttggctaa
aattttttgggaaaagtcTCTCTACTAAGGGTggaaaaaacgttaaaaaa
atggacaacaatttcgaaattcaatatctctaagggtcgattttcgaact
ttcgtCCGGACATACCCttcatctcgcaaacctagtacccccgggaGGGG
GCACTGGCCTTGACGGCCGATGGGGACGTGCCGTTGGAGTTtgaaccctg
tcagatatgattgtttggtaaatttgggaccctatCGGTAGGAAAATCAT
TTTcacccattttcaccctgaaaagtggcaaagatgacaaaatgtagaca
aaagattgaaagtttttctaatgtcaaaaaataaccaaaagacgACCCTA
TCATCAGGTACTAATGTTGACATTAGTAAATTTGttaccctgtcagatat
cttcagagcctagaaaagggaccctgaccagcggcacgtccccgttcCCA
ATTTCGCCTGAGTGCCTCCACCGGGCTAGTACCGGTGTTTTTAATCCGCG
GATACAGCCATAATCAGCCATAACCACCCATAATCACCTATAATCAGCAA
tcggctaccccattggctgtTTTTTCGTATATAAAGGAATGCACTTGCTT
GTAAAATCATTCTAATACACCGTTCCCGGGGTGTTGTTTGAGATATTACG
TTTGAGTGTTTCTCTTAGATATAACTAAGATAGAACTAGAAATAGAACTA
CATGAAAACAAGGCCTGGCTGTATAgagggctgtagaggcctcaattGGT
CCCACTGgggaactttgcctgactgcttagtttggcaaggtataaatagc
cagaaaaagcactccaggcatgctccacgtccagGGTTCGGGTCAAAGTc
ccaatttttgaccaggttttgaTANACAGCCAATGAGGTAGCCGATTGCT
GATTATGGGTGGTTATGGGTGGTTATGGCTGTATCTGCGGATTAGAAACA
CCGggctagtacccccccccccttgggtcATGGTGTGGGAACTTTGTAGT
ATCGTTGTATAATAATACTTGTATATAGCATTTTATGTAATAACCATGTA
ACACTAGATTATAAGATAAATGTTGTTTatcgggaaaaattttcgtcgaa
gaaaattttcgtcggggaaaaatattcgtcacttggccaaaattttgtca
CTCTTCCACGACGTTTCCCCCGATTGAATTTACATTTCTCTgatcaatga
aaaatatttaacgaataaaaaaaattttgcttgatgaatgaaaaataatt
tttgatgaataaaaatactttttgatGAATGAAANTTTTATCAGCGAACG
GCCGCCAGAAGTTGACCATGTGGTATAAGGAGTTGGGTTCACGCACTAAG
TATCCCCGGATCGAATCGGGTCAAGGTCACCTTTAATTTTTTatccaggt
tttgatatttcatgttattttaggtgtagattccgaaaaaataggttcTA
ACTCCTGAAAAGTTGATGGAAGGGCGCTACGGGACCGTAGGGGATCCGTA
CGGGACAGTaaatgaccccctccccctagcgccggactgggtagGTCTCG
CGACTTGNATAGCGAAAATCActtcaaaaaattgtgaaaaaacctttcga
tctcgtacacgcttttttttttataagaacggtgtttttttatttcatca
tggatattcttaactttttggcgaaaatcgtccaaaaatattcttacggt
attcttaggttaagatcgaaattggcaatctacaggttaaaatgcatcaa
aaatggcattcttaggtttagttgctaaattccatgatggtgatattctt
accattttcttaatttttcggccattttcatcatggacattcttataaag
tgtattcttataaaaaaaaaagcgtgtaggcttttttaacacccctgtgt
gTCACAAAACCGCTTGGCCGTAGCCCAACTCTAAATTATAACTAATATAC
CCTATagtttcagccccactgggaaatttactTCGATTTCATCCACATTC
GAAATtcgatgtttaaaaattgcactctgaAACCATCAACACTGTATTTA
tttaagcttggaacaatagaagggggaggcgtacggggtttgcgatttcc
gaaataccccgaaataccgaataattttgctaaaatttctgagattccgt
aaaaaaatacttgcaattccgataccgatcttttgagtatttttcttcgt
tttgactaatttttcatcaaaattaatttacGCCCCCCACATAGATCCTC
AccgaaaaaagttccaccagggctgtgaggcaggggtgttttTTTAAGTA
ATGTCTTACCCCTCGTAAGATCCAATTTAGCAATTTTTGGACCCAGTTTA
TATTTTAATGAtcttaatgtttttaatattcACCATTTAACCCTTTTCGT
GCCGATctcgtatatatccgacatgcaaattttcactctacttgccaatg
tcggatatatccgacatcaaatttttttacctaattGCCGAGGCCTTTAA
AAAAGAGGTNNCTGtatcataaaatataaaacaaattcaaatacaaatgt
caaacattggcaaataggaataaaatatccttgtcgtatatatccgacat
gcggcaacacgagttaaaatttgcatgtcgtatatatacgacatcggcaa
atcaggttactaaaaaaaattacccctcggcaaatggattggggtacaaa
aacAAGGTAACGGCACGCAAAGGGTTAAGGCAGGTTGTTGAatgagcttt
tccagaaatttttttctgaaaaagcccaatgctttttcttatatttctat
TTAGCTTGCTGACTACCATAAAAGCGGACGTGGAAAGAAAACTGAATGGA
ATACAGAAAAATTAAATGAACTTATTCGAACACATACTGTTGTGAAAAAG
CGTGGACCTAAAGAGAAACAAGTTTTTCTTAATCAAATTATCAAATGATT
ATTTGTATAAACCCTGGTAAAATGTAAGAGAGTTTGTAAACAACCTGAAA
TCTTAAATTTGAGTAATCATCATTGTGCATTTGGAATATGTGGTTGTTGG
CTTTCTTTGTACATGAAATTGATACCCAGTGTAAAGCTGCTTTATCACAA
TAATATAATCAAAGAATAGTCGAAAGTACACACAGAA Coding sequence (CDS) from alignment at sc0000122:145073..153359+ >TCONS_00011182 ID=TCONS_00011182|Name=TCONS_00011182|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at sc0000122:145073..153359+ (Clytia hemisphaerica)
atggtaaatttaaCACAACAATTTTTGGCGAGAAGACAAACAATTATCTA
TGGtgtgaaaagaggaaaaataccTCTAGCCTTGAGGCCAACTGTGCCAC
CGCAGACCAAGCAAGCAGGAAATCCAACGTGTCTTGATGAGATGTCTCGT
TTATTCAACTGTTGGTCTGCTTCATCGTTCGAAGATGGCAAATGTGGTAA
AGAAATTGCCAACTTTTTAACTTGTGCTGATAAATCGCTTGCTGACTACC
ATAAAAGCGGACGTGGAAAGAAAACTGAATGGAATACAGAAAAATTAAAT
GAACTTATTCGAACACATACTGTTGTGAAAAAGCGTGGACCTAAAGAGAA
ACAAGTTTTTCTTAATCAAATTATCAAATGAatggtaaatttaaCACAAC
AATTTTTGGCGAGAAGACAAACAATTATCTATGGtgtgaaaagaggaaaa
ataccTCTAGCCTTGAGGCCAACTGTGCCACCGCAGACCAAGCAAGCAGG
AAATCCAACGTGTCTTGATGAGATGTCTCGTTTATTCAACTGTTGGTCTG
CTTCATCGTTCGAAGATGGCAAATGTGGTAAAGAAATTGCCAACTTTTTA
ACTTGTGCTGATAAATCGCTTGCTGACTACCATAAAAGCGGACGTGGAAA
GAAAACTGAATGGAATACAGAAAAATTAAATGAACTTATTCGAACACATA
CTGTTGTGAAAAAGCGTGGACCTAAAGAGAAACAAGTTTTTCTTAATCAA
ATTATCAAATGAatggtaaatttaaCACAACAATTTTTGGCGAGAAGACA
AACAATTATCTATGGtgtgaaaagaggaaaaataccTCTAGCCTTGAGGC
CAACTGTGCCACCGCAGACCAAGCAAGCAGGAAATCCAACGTGTCTTGAT
GAGATGTCTCGTTTATTCAACTGTTGGTCTGCTTCATCGTTCGAAGATGG
CAAATGTGGTAAAGAAATTGCCAACTTTTTAACTTGTGCTGATAAATCGC
TTGCTGACTACCATAAAAGCGGACGTGGAAAGAAAACTGAATGGAATACA
GAAAAATTAAATGAACTTATTCGAACACATACTGTTGTGAAAAAGCGTGG
ACCTAAAGAGAAACAAGTTTTTCTTAATCAAATTATCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011182-exon-sc0000122-1491911889:145073..145213 | TCONS_00011182-exon-sc0000122-1491911889:145073..145213 | Clytia hemisphaerica | exon |
| TCONS_00011182-exon-sc0000122-1510915933:145073..145213 | TCONS_00011182-exon-sc0000122-1510915933:145073..145213 | Clytia hemisphaerica | exon |
| TCONS_00011182-exon-sc0000122-1575043694:145073..145213 | TCONS_00011182-exon-sc0000122-1575043694:145073..145213 | Clytia hemisphaerica | exon |
| TCONS_00011182-exon-sc0000122-1491911889:146704..146819 | TCONS_00011182-exon-sc0000122-1491911889:146704..146819 | Clytia hemisphaerica | exon |
| TCONS_00011182-exon-sc0000122-1510915933:146704..146819 | TCONS_00011182-exon-sc0000122-1510915933:146704..146819 | Clytia hemisphaerica | exon |
| TCONS_00011182-exon-sc0000122-1575043694:146704..146819 | TCONS_00011182-exon-sc0000122-1575043694:146704..146819 | Clytia hemisphaerica | exon |
| TCONS_00011182-exon-sc0000122-1491911889:153027..153359 | TCONS_00011182-exon-sc0000122-1491911889:153027..153359 | Clytia hemisphaerica | exon |
| TCONS_00011182-exon-sc0000122-1510915933:153027..153359 | TCONS_00011182-exon-sc0000122-1510915933:153027..153359 | Clytia hemisphaerica | exon |
| TCONS_00011182-exon-sc0000122-1575043694:153027..153359 | TCONS_00011182-exon-sc0000122-1575043694:153027..153359 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:145073..153359 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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