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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011180 ID=TCONS_00011180|Name=TCONS_00011180|organism=Clytia hemisphaerica|type=transcript|length=898bp
CATACAGTGAGGTAGATCTGTTTTTACCGTGTACCGGCAAGCATTATATG
CGGGCAGGGTAATTGCCGGACTTGATAAACTACCGGATAGGGAAGCTATG
TACCAGGATTTGGAAAAAGAACAAGTTCTATCAAAGCAACTTGGAATTGA
TGAcagacattttcataaattcgGTTCAAGGCAATTTGACTATTTGGACG
ATTTGGCGCTCCTTTCTGAGCCAGGCGTGGTGGAGCCATATATACCATAT
TTAAAAGACATGTATGATTACGTCATGGAAAAGCGACGGAGAAACGTTTT
AACGTATCGTAAAGATCGGTATCATATTTATAAAGATGGCGCTTCATTCA
AAGTTACGTAATCTTTCCGtctgaaacttttttatttaataaaatCTACA
ATACTCAGTGTTGACTGAAGATAGCACAACAAGAAATCACATCATGTGTA
AGTGAGTTTATTGGAACAATAAGccttaaaaactcaaaaaataagaaaaa
tttaattttaatcaaattttgaaaaacttttctttagTTCAAATTTGCCA
CTATTGGCAAAGTGTTTCCTtaaaaaacattacatcatgaaaattatgaa
ttctggatttttcgatttcgatAATGTCGATAATTATTGTTGATAATTGT
TGATAATTAATTGATGTTTCAAtacattacttttcaaaattgCATGTAAA
GCAATGTCAATTCTGACAGGAACGAAGTATTAATTTcaccaaaatatttg
tttaattTGTGTTTTATATTCAATTGAATTGCATTAATATTTGTAATATT
GCTTAGTCGAATTACAGTAatgtaattcgaattctcaagggaccgagaat
tttgttcgaattacatgagtttcgAACTAGAtgactttttgtattttt Run BLAST on NCBI transcript from alignment at sc0000122:132999..134065+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011180 ID=TCONS_00011180|Name=TCONS_00011180|organism=Clytia hemisphaerica|type=transcript|length=1067bp|location=Sequence derived from alignment at sc0000122:132999..134065+ (Clytia hemisphaerica)
CATACAGTGAGGTAGATCTGTTTTTACCGTGTACCGGGTATGAATATtcc
ttttcatttcttgactcgaaaatattcaaaaatttagtAACTTGTGAAAA
GAGGCTGGTAACTAATTTATATAAACACATGTTTTATATACCCGACCCAA
CCCTCTGTTTTATTGGAATACCATCAACTGTAGCGCCATTTCCTTTTATG
TACCAGCAAGCATTATATGCGGGCAGGGTAATTGCCGGACTTGATAAACT
ACCGGATAGGGAAGCTATGTACCAGGATTTGGAAAAAGAACAAGTTCTAT
CAAAGCAACTTGGAATTGATGAcagacattttcataaattcgGTTCAAGG
CAATTTGACTATTTGGACGATTTGGCGCTCCTTTCTGAGCCAGGCGTGGT
GGAGCCATATATACCATATTTAAAAGACATGTATGATTACGTCATGGAAA
AGCGACGGAGAAACGTTTTAACGTATCGTAAAGATCGGTATCATATTTAT
AAAGATGGCGCTTCATTCAAAGTTACGTAATCTTTCCGtctgaaactttt
ttatttaataaaatCTACAATACTCAGTGTTGACTGAAGATAGCACAACA
AGAAATCACATCATGTGTAAGTGAGTTTATTGGAACAATAAGccttaaaa
actcaaaaaataagaaaaatttaattttaatcaaattttgaaaaactttt
ctttagTTCAAATTTGCCACTATTGGCAAAGTGTTTCCTtaaaaaacatt
acatcatgaaaattatgaattctggatttttcgatttcgatAATGTCGAT
AATTATTGTTGATAATTGTTGATAATTAATTGATGTTTCAAtacattact
tttcaaaattgCATGTAAAGCAATGTCAATTCTGACAGGAACGAAGTATT
AATTTcaccaaaatatttgtttaattTGTGTTTTATATTCAATTGAATTG
CATTAATATTTGTAATATTGCTTAGTCGAATTACAGTAatgtaattcgaa
ttctcaagggaccgagaattttgttcgaattacatgagtttcgAACTAGA
tgactttttgtattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011180-exon-sc0000122-1491911889:132999..133035 | TCONS_00011180-exon-sc0000122-1491911889:132999..133035 | Clytia hemisphaerica | exon |
| TCONS_00011180-exon-sc0000122-1510915933:132999..133035 | TCONS_00011180-exon-sc0000122-1510915933:132999..133035 | Clytia hemisphaerica | exon |
| TCONS_00011180-exon-sc0000122-1575043694:132999..133035 | TCONS_00011180-exon-sc0000122-1575043694:132999..133035 | Clytia hemisphaerica | exon |
| TCONS_00011180-exon-sc0000122-1491911889:133205..134065 | TCONS_00011180-exon-sc0000122-1491911889:133205..134065 | Clytia hemisphaerica | exon |
| TCONS_00011180-exon-sc0000122-1510915933:133205..134065 | TCONS_00011180-exon-sc0000122-1510915933:133205..134065 | Clytia hemisphaerica | exon |
| TCONS_00011180-exon-sc0000122-1575043694:133205..134065 | TCONS_00011180-exon-sc0000122-1575043694:133205..134065 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:132999..134065 + |
Blast
The following BLAST results are available for this feature:
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