TCONS_00011173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011173
Unique NameTCONS_00011173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011173 ID=TCONS_00011173|Name=TCONS_00011173|organism=Clytia hemisphaerica|type=transcript|length=1148bp
CGAGCAGCCAAATCACAATTTCAAAATGCAAATGGAGGTCTTCTGATCAA
GTCGAGATCTGATGTGGTAGTGTTGGTTTTAGTATGGAAGGTTACcaaaa
atatcttgaaaagCTCATTGATGAGTTATAtgctaaaaaaatgaaattgg
ttTACTGTTGTGACGAGATTCATCAAGCAATGAAACGCCTTGAAATTCAT
TCTGTCATGAAGAAAGAGATTGAGAAGGAGGAAATTGTACACCAGACACA
AATAGAACTTGAAACTGTCGATTTTGAAGAAGTTGATGATTTGATAATAA
AAGCCCAGCAGCTGATTTTAACAAAAGATGCTAAGCAACCATCTAAAAGC
TCTGCAGGAGTGAAATCAGTTGAGCTATTTACGAAGAAAGCCATTCCTAA
AGGCTTAACTAGCACTAAAAGTTTAGGAAGATCAGCCAGTTATAAgccaa
aaataaacaaaatcaatccaaaattgaagaaagaaaacaacaaaagtaAA
GAAGTGATGGACAATCACAGGGCTCCACAAGTTGAAACtaaactttttct
aaagaaactTCCTGAGCCCTACAAAAAAGAATTTATGTTATTGTTGAATG
AcagtaaaaaatataataaatttgTCAAGAGACATGTCGTAAAACACAAA
GCAGATACTGATagagaaaaactttcttttcttgAAGCTGTGGAGAGCAT
TGAAATGGACCAAAAACCATGCTACATAAAAAAGATGGATAACgttgatg
aaatttttgaacaatttgaATACAAAAGTGATACTCTACCAAATAATTTC
AAAGAGAGGCTTTTAGATCAGATTGATTTCCTTAAACAAAACCAAAGGCT
TGAGTTTCTGTTGACACACTCAAAATTTTTTAGACAATATTTAATCGAGA
ATGAAGTAGATGCAAAGACTTATCGATTGATTCATTGGCAATTGACAGAA
TGTCTACCAGTTTTGTTAATAGATGATGAAGACTCATAGTATTTAAgatt
gttcttttcttttgtgtaatattgttcaaaataatttaaagatCACTATT
AAAACATCACTGtcaattgttcttatatttcaCTGATCAAgaataaaagt
atttttaacttttagttACACTATATTTTTCTAGGTGGTATGGTGAAG
Run BLAST on NCBI

transcript from alignment at sc0000122:79522..91686+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011173 ID=TCONS_00011173|Name=TCONS_00011173|organism=Clytia hemisphaerica|type=transcript|length=12165bp|location=Sequence derived from alignment at sc0000122:79522..91686+ (Clytia hemisphaerica)
CGAGCAGCCAAATCACAATTTCAAAATGCAAATGGAGGTCTTCTGATCAA
GTCGAGATCTGATGTGGTAGTGTTGGTTTTAGGCAAGTTAATTTCTTTGA
TAATTTTAATTCAAGTGTCTTGTATTTAGTTTGGCTACAACCCACCCAtt
gaacaatcgaactaatcgaactccatcaaatgattaaagttcgattaaaa
aaaataatcgaacctaatcgaacactcacaatttttgaagcaaaagcagt
tcgattagttcggtcagtaaaaaatTCGATTAGTCCGATGATATTgaaaa
tcctcatatcttccctcgcttgcaaaaactttgtccttgcatgcgattgc
caatttcgacagttcccggggacttgacgtttattgtacccgggATATTT
TTGTCTATCCATAATAAAATCCttagcccctctgttgcgatttcgcgcAC
GGCCGAGTGGCGGAAAACTATGCCCtgccccaacaaaccgcctctggcgc
taaaaggatacaggaaaagtgtgtaatccgttattggaagtaatttcccg
atttacattccgaattcgGCTTTGAAAAGACactaatatacggtggcgga
gcagcacaaacttgtctaACAAAATtcgtttatcgaactgatcgaactga
gacccattgatcgaacttaatcgaacactcacaatcttttaaaaaatctt
agagttaatcgattaatttttttaatcgaactttaatcgttcgatggagt
tcgattagtttgattgttcgattggttcgacaagttagattgatcgggtc
tggattCACTTATtaagcagttagtcacactagcgtcccgccaaaatccg
tatcaaagattaatgctgcgaaagcgctatatcgtttacttgactttcaa
gcaaaaaaatgcgccgcaaaacttctaaaggaattcatgaaaaaataacc
cggcgctttttaatgaaatttacattttcaaaaactttgagaaattgcct
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caccaccggataggctgtttcccggaaattttgccggacctcaaacaatg
acccatttacatgtgtggaattatttttactttagcgtatagacaaggcc
ttaaaaatcgaagcgctgtgtcaggaattgaatgacaaattttagttggt
tgattttggctgctgcacgttttattttgtttcaaactttcaagttttaa
ttaattgtcttgcgaNgcttttgaaaaaaatggtttgaatttttttgctt
ccgaaatttttaaaaacctaaaattttaagtgaaaaattgaaaaatgtgc
tcacttagtacaccatatcctaccaNTTAACTCTCATCCATGTTGTGCAA
ATAcctcctgtagatgactgatgttgttttttctgaaagctagatttcct
agtgtgactaactgttaagAGGTCTAAAAAATGACGCAGAAACAAGAAAA
CCTATGTCACAACCACAGAGTGCTGACAGAGTTTTAATGACTTGTCATCA
CTTGTTTGGTttctgtaataaaaagaaagtcgttattgtgaactttgaac
atgctttaAGGAGATATTTCCACTATACTAACTGATcatatccagacggt
gtcaatcgaacgaatcgaacgccgaatcaattgaacgcaatcgaataatt
gcaattcgattgtcaaacgcaatcgaatcgcaatcgaatattacccagga
tttgctgttcgattgcttcgattacgtttgattgggccattccagaattt
gtctgtaacatgggggcggacgacacaggatcaccgagggcaaaagtttt
caccaaaattcgaaatttccaaggcaagagaagaaaatgtatgaatttcc
aaggcaattgaattaaaaaaggccaggggggggggggcttgcaGTTACTN
AGCTTAcgcaccacccatgttgcagttagtccactggtggagtaactgtt
ttcccaaattttggtttatataccaccacggtagtaattgtcatagtgtt
tatataataactgcatgacccccccctgaAAAGGCCTAAAAGAGTGGAAT
TTttcgatgcattttgcaaaagtacatcgGTTTTCAttggaatttccgac
caccactggaaaagaaaaattatttctgagtctggaaatttttttaacat
gtaCCTCGTCCAGCGGGGGTAACAAAAGTTTTTTGGGGTAGCCCATTAAa
ttcaattacgttcgattgattcagaTTTTATTCCCTTTGGTACGGTACTT
AAGCACTTACCCAGGAATCAGCCGTTCGATTGATTCAGATTTTATTCGAA
ATGGTACGGTACTTAAGCACTTACCCAGGAAtcagccgttcgattgagat
tcgattacattcgattggtttgattgcgatttttgttcgaagttgttcga
ttgacaccgtctatACTGTATGTAGGTTTTAATAATtataatgggctatt
ccatttttaaaccatacaggcagtctaagcttaaactcctatacCTTGat
ctggggggggggtacttaggcaaaattggtgccgggtatgtgcgagccat
aagggtaccttttttcattcctcaaaagcctctcaaaggggtacaaattc
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GAAGCACTTTTGGAGTTTTGCGATGTAATTTGCGATTAAATGCGATCTAT
ATTTACGATCTATTGTTCTATCTACAACATAAATGTGAAGTAGATAGAAT
TTAGAAATTTGTATGCCTCTTTTGGAATTTTGTgttcaaaacaataataa
atttaTGTCTCTACTGTCTCGAGAAATCTCTACGAGAACGGAAATTTGTG
tagtaaaattatattatatattatagaaCCATATTCTTGTAGAAAATAAC
TGAATAACCTAGaaagtaaaaagtaataaaatcgaaTGCTAAAGTGGTAG
TAAGTTGTAAGTCTTGTTTATCATCATGTGACTGAAAGTCAAAATGTCTC
AATCAAACTGTTCAAATTCATCATCACTGTTCTTCAGGTCAGATAGGGTA
ACCTGAGCAATATCAATGACAGAATATCCACTTTTAGATGTAACAGAGCG
ACGCTTTGACGGATAATCTCTTGGTTTTGCCCCGTTTATCCTGTGAACCT
TTTCCTGAAACCATTTATTGATATAAAGGTCGGCCTCAAATTCGTCGATT
GAGACACCTTCTTCTCCCACGCGCATTTGTGTTTCCAATCTAGCCTGACC
CAAGCGATTTCTGGAATCTGGAGTCTATTCATTCTGCTGAAAACTCTTTC
AATTTTGGCATTTGTAAACGGGGTAATGAGAAGAATTTCTATGATATGTA
AGACGTTTTTACATTCGTCTTGAAGCCCCTTATTCGAAAAAACTTCTTTC
CAAACCTTAAGATAATCCTTCTCTCCTGCCTTCAATTTGGGTGAAAGGGA
AAGCTTTAGTCTATCCCATTCTGACGAAATTTGAGAAACATTGCACTTTT
TCTCAATAAGAGAGCGAAAATGATCGACTAAGGCATTCACACTTTCGTCA
CCATAGTCTAACAGCCCTTTATCCTCCTCAGGCCATAATGATACGTCAAG
GATAGTCACGAGGTTTTCGAAAACCGGTGATGCCATCATGTTTGAAAATC
GATTTTCCATTGTGATCGCTAGCTTCGTAATAATTTCTTCAAATGACTCA
CTGATCGATTTCTGATGGACTGTAAAATTTGATAACTTTACTCCTTGATA
GTTTCCATCATCAGCAACTTCCTTGAATAGTTTGGTGATGTGAATCAGAC
GGTCATTGTTACCATCCTCTAACGATGAGTCAACAAGAATTTGTAGTTTG
GCCATTGTCCAATTGAACTCTTTAATTCGACGGACAGCAAGCACAGGGTC
ATGTTTTTCCTTCTGGAAACCTAAGCTGAGCACTTTAAGTGGCGTTAGAA
CATCAATGTACATTGCTAAGTGTATGGGAAACTTtgcatttttccatttt
ttcacttCTCCTTGTATTTCAGCCCGCTTCAAAGCCTGACTGTCTGTTTG
TGCTAACGATTCTAAATGTTGGATGTATACACCATAGTTGTTTAAAACAA
TCTCCATAGCTTTGATCTTGTGGGCAATCCATCTTGTTCCATACGATTTG
TATGGTTTTGGAATCGATTCATCATAAATTTCCTCAAACTTTTTGAGTTC
ACGTAGCCGTTTCGGGCTTTTACGATATAAGTAAAATAATTTGAGGAGCA
TGTTGtcgatttctttaaaaaatgtcttATCAAAGCAGTCTTTAACGGCT
AGCTCCAGATTATGgttaaaacaatggataatggTTAGCCATTGTGCATG
AACTTGCATCTTAGCACCAATACCATTATGGATGCCTGTATTAACAGAAG
CTCCATCAACACACAGATTGGCAAGGGAATCATACATAGGAGTTATCCCG
ATATTGTGAAAAgccttttcaatattttctttcaatccATCAGCAGTTGC
TTGATCCGGAGCCTCTATTCCTAAGAACTTAACTTTTGGCTCACCACCAG
ATAGATAGAGAACATATACTACCTCTTGTTCTGTGATGCTTGCATCGGTA
CTCCCATCGGTTAATACTGAATAGTAGTTGGCATTCAAAAGATCattcac
aaaagaatctttcatCTCCTTACCAACCGTATCGATAAATTGAGCAGCAG
CTCTGTCATTCCTGTAACTGTGACTCTTTTTCATACCGTTCTTCTCCTCC
AAACTCAGTAGATCTGAAAAGTCACTGTACGGTCGTTCCTTTTTGCATAG
ATAGTATGCTGTGTTGAATCTGGTGCGCAGGATCTGAAATTATAAATACA
GGGGGGATTCTATTTTTTTCACTCCATTCTCTATTCGAAATACTACTCTT
TAAAACTATACAAAAATCATGTGAAAccaattaaaaacttttttctagaC
ACCCCTCTTCAATTTAAAAACTTAAGACATTTATAAGTTTTGTTTACTGA
CTGAAAAAGGTTTGTCTAAGTATGTTAGAAAATTAGCATTTGAGCTTTAA
AATAAAACGCAACTCtccagctggcacaaaacgttgttttaacgttcata
taactgatttaacgttcatataacgttttaacgttcatataacgttttat
ggacgttatgaacgttagatgtacgttgaaacaacgttgtgtgccagctg
ggtaattaATTTTTAGAAGGAACTAAATTTTCATGATTTAATCATTACAT
ACATTGCAAAAGAAGAGAAAACACAGTATACAGATTATGTAGTTaatcaa
aattatgacaaaaacTTATTAccttttcatcttcttcttgCATTTTTGTT
AAACCTTTACCAATCGgtgtttttgaaacaatttccTTGTTATAAGATTT
TGCACCCAAGGAAACTTTCAATGAAAGGTCCTTTGCATGTTTATGAGGCT
CTCCTTTGATGTGTTTATCCAAACTATCTTTCTTTATAGATTCTGTACCG
TCTACCCAAGCCTGACTGAATCCTTTCATTCCTTTAATCTTGTCAGAAAA
CTGAGAGCAAACAATACACTTCATTTTTCTGACCTTTCCATCGACAATCT
CCAATATATCTAGCTTGCATTTTAGAGAACTTTGCCACTTATTTACAGTT
GTTAACGAAGCCATGTTGGTATGAAAATGAACGAAGAATGAAATTAACCA
CTCCATTTAAGCTAAAAATGACGCAATAGTGAGCTTCAATAGCTTtgaat
aaaacaaatgaaatacatgaaaaaactttttgctatttactttattcaaa
ttttcatttatgacgtcaattCTATTTGTAGGTTATCTTTGCtctctttc
tgttctaatattgtgtcctgccaagcgatttccatacAGCAAAAACACAC
ACCGGTTTTGACTCGCAACGCACCGATTGAGATCGGTTTTTCCCGACTTA
AACCGGTTTAAAACGGTTGAGAAATCGAtgtcaaagtttctaaaattgag
tATCTCGAGCTTGTTGATTTTTACATACAANNNNNNNNNNNNNNNNNNNN
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NNNNgccccccccccccctttattaatttttttgaaaatttctagctACC
AAAAGAAAAgttccttgttttactctaaaaagcctaaatttagtctattt
tgaccctttttagggtttaggtccattttccaaccccccggtaattaggt
ccccctcgtttatttaatttgaaaatttttttcaaccccCTCGTTTATAC
gaacccccccccgtttatttggcacctaagagtacattgacaagtaatcc
ctgagagaagtttatattgaaatctgcaacaaaaaacgaaagtggtctct
tctgcTTCTGCTTCCTGgcgctcctttgcagctgtttatcaaatgtccac
caatgaggttgccgcatttcaaaaTGACCCTTCtctttggcacccgtggc
ctctcaGTCACTGAACTTTATATACCCTTATGTAACCATGACCATTCGTT
TTAGTAAGTCAAAATTGATCCATGTGCAATCTAATTGGGGGAGTATTGAG
ATGTACTGCCCGGAATGAATAACTTTCCTAAAGTGTAtacagatataatt
ggcagtgcaAACAAGAAtatctgtaatttttttttgcttgtttaagagaa
tcaaaagcgaaaatatttgaatgtatttttggttgaaaaattcacgaatt
caaggcaaacaaaaaaaagtcatttggaaGATATGGGCCCCAAAATAACC
CTtagtagcacttttctgtgaaacatCAAAATCcccaaattttaaataaa
aacagggTTTATCGTACAGTgcatttaaaagttgaaaaagtgttAAAAGT
GTTGATTCATTGGTATTAAAGtaataagtttttgttcctccatttacAGT
ATGGAAGGTTACcaaaaatatcttgaaaagCTCATTGATGAGTTATAtgc
taaaaaaatgaaattggttTACTGTTGTGACGAGATTCATCAAGCAATGA
AACGCCTTGAAATTCATTCTGTCATGAAGAAAGAGATTGAGAAGGAGGAA
ATTGTACACCAGACACAAATAGAACTTGAAACTGTCGATTTTGAAGAAGT
TGATGATTTGATAATAAAAGCCCAGCAGCTGATTTTAACAAAAGATGCTA
AGCAACCATCTAAAAGCTCTGCAGGAGTGAAATCAGTTGAGCTATTTACG
AAGAAAGCCATTCCTAAAGGCTTAACTAGCACTAAAAGTTTAGGAAGATC
AGCCAGTTATAAgccaaaaataaacaaaatcaatccaaaattgaagaaag
aaaacaacaaaagtaAAGAAGTGATGGACAATCACAGGGCTCCACAAGTT
GAAACtaaactttttctaaagaaactTCCTGAGCCCTACAAAAAAGAATT
TATGTTATTGTTGAATGAcagtaaaaaatataataaatttgTCAAGAGAC
ATGTCGTAAAACACAAAGCAGATACTGATagagaaaaactttcttttctt
gAAGCTGTGGAGAGCATTGAAATGGACCAAAAACCATGCTACATAAAAAA
GATGGATAACgttgatgaaatttttgaacaatttgaATACAAAAGTGATA
CTCTACCAAATAATTTCAAAGAGAGGCTTTTAGATCAGATTGATTTCCTT
AAACAAAACCAAAGGCTTGAGTTTCTGTTGACACACTCAAAATTTTTTAG
ACAATATTTAATCGAGAATGAAGTAGATGCAAAGACTTATCGATTGATTC
ATTGGCAATTGACAGAATGTCTACCAGTTTTGTTAATAGATGATGAAGAC
TCATAGTATTTAAgattgttcttttcttttgtgtaatattgttcaaaata
atttaaagatCACTATTAAAACATCACTGtcaattgttcttatatttcaC
TGATCAAgaataaaagtatttttaacttttagttACACTATATTTTTCTA
GGTGGTATGGTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006261XLOC_006261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011173-exon-sc0000122-1491911889:79522..79603TCONS_00011173-exon-sc0000122-1491911889:79522..79603Clytia hemisphaericaexon
TCONS_00011173-exon-sc0000122-1510915933:79522..79603TCONS_00011173-exon-sc0000122-1510915933:79522..79603Clytia hemisphaericaexon
TCONS_00011173-exon-sc0000122-1575043694:79522..79603TCONS_00011173-exon-sc0000122-1575043694:79522..79603Clytia hemisphaericaexon
TCONS_00011173-exon-sc0000122-1491911889:90621..91686TCONS_00011173-exon-sc0000122-1491911889:90621..91686Clytia hemisphaericaexon
TCONS_00011173-exon-sc0000122-1510915933:90621..91686TCONS_00011173-exon-sc0000122-1510915933:90621..91686Clytia hemisphaericaexon
TCONS_00011173-exon-sc0000122-1575043694:90621..91686TCONS_00011173-exon-sc0000122-1575043694:90621..91686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:79522..91686 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.2616	12.9181	6.93024	6.78016	5.19708	3.82496	3.45601	4.63851	1.75112	1.49861	2.26629	1.01046	1.92398	0.730677	1.75924	3.36542	3.78262	3.9537	1.36556	1.13476	2.96689	2.67273	33.2269	25.8758	2.2311	4.34443	3.69262	2.37748	12.5992	16.9194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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