TCONS_00011164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011164
Unique NameTCONS_00011164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1278

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011164 ID=TCONS_00011164|Name=TCONS_00011164|organism=Clytia hemisphaerica|type=transcript|length=1278bp
TAAGAAAAAGCTGTGAGAAttgatgataaaaaaaaaaagatgaaatcaAA
CTTTGTAAGTCAAAAGAAACTGGAACTGATGCTGATAAgatattaaaaaa
tgtaaagtaTGACCAGGACTTGGATTAAATTGCTCTTCCTTTGTGTTGTG
AAGTATATTACCAGTAGTAAGAGAAAACCATCATTAACATTCAACGATGC
TCGAAGGAATTTTCGACTTGAAACACAAGTATTGATATGTATCCCTGAAG
AAAGACTCCCAAAATGCATAGCGCATTGCTTGAATAAACCCACATGCCTT
GCGGTCAATTTCAATGCTGAGCTGAGGAAATGTGAACTACTTGGCACCAC
AGCGAATGAAAGGCCAAACCAAGGAAAGGATGCTAAGGGATGGCTTTACT
ATGGACCCAGAGAAGAGGATGTACGGAAAGAAAATTGTGAATTTGCAGAT
CTGCAAAATACACAtggtgaaaaatattgttgtcCAAAAGGAAAAAGCGG
AAATCGTTGTCAGTACACAAATATTTGTTTGGAAAGATACTTTGGTTACT
GTATTGATACTCGCACCCCGACAAAGACGAACAATCATTTCGGCATACTT
GATTCTTTGTCTCATTGCGTAAACAGATGCATCAGGGAAGAGGCAGATGG
TTGTGATTATCACATCCGACAAAGTGATGGTAAAGCATGGTGCACTGCAA
GATATGGAGGAGGTTACTCAGACACTGAGCCTCAGACGTCTCCTATGGGA
TGCTTtacaattataagaaaaaattgcaTGAGAAATACTACTTTGACGTG
CCTTTATGTGAACGGTGACTGGTTCGGCCACTCAGAATTAAAGTACAGCC
AGCCGTCAGTACTAACTGAAGGTTTTTGcagaaaagtttgttttgataga
AGGAGAGAGATGGATGATACAATCAATGCAATGAAGTATGATGTCACaaa
CTCCATTTGCAATTGTATGAAGGCAATAACATATACTGAAAATCCAAACG
ATACAAACAGAATTTGTCTTATCCAAGAACAAAGCGAATTACAATAATGT
AAAGGGTGCAGTCACACTAAAGAAATGACACTTACTTTGTGTGGATCATT
CCGATGCATACAGCAAGCAGTTAAGCGCTCCAGAATGTTTCTCATGTGGT
GTTCAGTTGCATGCGATATGACAGCCATTGCATCATTTGTAACCTCTCCA
ATACCGTGAAGATGGACTGGAGAAAGATTTTTATAAACATTGTTTAAATC
AGAGTTTCTTAAAGTATTACATTCCGAG
Run BLAST on NCBI

protein sequence of TCONS_00011164-protein

>TCONS_00011164-protein ID=TCONS_00011164-protein|Name=TCONS_00011164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MTRTWIKLLFLCVVKYITSSKRKPSLTFNDARRNFRLETQVLICIPEERL
PKCIAHCLNKPTCLAVNFNAELRKCELLGTTANERPNQGKDAKGWLYYGP
REEDVRKENCEFADLQNTHGEKYCCPKGKSGNRCQYTNICLERYFGYCID
TRTPTKTNNHFGILDSLSHCVNRCIREEADGCDYHIRQSDGKAWCTARYG
GGYSDTEPQTSPMGCFTIIRKNCMRNTTLTCLYVNGDWFGHSELKYSQPS
VLTEGFCRKVCFDRRREMDDTINAMKYDVTNSICNCMKAITYTENPNDTN
RICLIQEQSELQ
Run BLAST on NCBI

transcript from alignment at sc0000122:65267..73895+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011164 ID=TCONS_00011164|Name=TCONS_00011164|organism=Clytia hemisphaerica|type=transcript|length=8629bp|location=Sequence derived from alignment at sc0000122:65267..73895+ (Clytia hemisphaerica)
TAAGAAAAAGCTGTGAGAAttgatgataaaaaaaaaaagatgaaatcaAA
CTTTGTAAGTCAAAAGAAACTGGAACTGATGCTGATAAgatattaaaaaa
tgtaaagtaTGACCAGGACTTGGATTAAATTGCTCTTCCTTTGTGTTGTG
AAGTATATTACCAGTAGTAAGAGAAAACCATCATTAACATTCAACGATGC
TCGAAGGAATTTTCGACTTGAAACACAAGTATTGATATGTATCCCTGAAG
AAAGACTCCCAAAATGCATAGCGCATTGCTTGAATAAACCCACATGCCTT
GCGGTCAATTTCAATGCTGAGCTGAGGAAATGTGAACTACTTGGCACCAC
AGCGAATGAAAGGCCAAACCAAGGAAAGGATGCTAAGGGATGGCTTTACT
ATGGACCCAGAGAAGAGGTAAGTCCACTTGACATTAAGAACGATAAATTC
TAAGTATTTTTGGACGGTttagatagaccttttcataaattacgtcacga
acaccatttgcctcgtattcaaacaattaccatggtgattgtgTCCCTTG
Ggacattaaatgattcttttacgaataggaagtagttttaataaaatcca
ctgggagttaCTGACCAAAGCAATAATTTCGAAACAAGGCAAGTGATGCA
TACGCATGTTCGTGCtggttcgtgacgtaatttatgaaaaggtctattct
tagctataaagattataaaaaatttctttctaaaataTGATAATACTAGA
TTtcatcaaataaacaaattccCTGAAAGATAACATGGTCAATGTATCTA
AATGTTATTTTTACCAAAGGATGTACGGAAAGAAAATTGTGAATTTGCAG
ATCTGCAAAATACACAtggtgaaaaatattgttgtcCAAAAGGAAAAAGC
GGAAATCGTTGTCAGTACACAAGTAAGACTTTATCTcttcaaaaaattat
gtcaaatatttcttaattcaaaatttagtttaaaCATTCCCAAAAACATG
ACGTTATCAAGCCTAAATTCGTTTTTTTGCTCTTGATAACCTTTAATCAC
CAAATTATGATTCCTTTCTAGatttaaatttccttttttaatgaaccaac
aaattaaatttcctcTGAAAAGGCAAGAAGTAAATCAACCTACTAAAAAT
ACTtcctttaagggctctggccatagtcaaaaaattgattttggtatttc
aGCTTAGAAGTTATGTTCCAGGTTCCgttacacttttaacaaagagtTAC
CTTtacaaattgctttttaatcgaatcccttaaaagtaattaagaattta
atttcaaaaatgacgttatgaactttaaaaataagttaataatgtgttgc
atcaccttcttttataacaAGTGCTACAAGTGATACAAATTggaatgaaa
aattggtcaaaaagcatttttttcaagattttgagacaagcatgctttta
gaaaaattttccgaaaatattattttagttcggtaaaaaagaaacaccat
ctaccacaaaaagtttttcaaaatatttcttcgctgaaaataagctcttc
caagttgaaatactcttcgtcacaaaagttttcattttcttcttcatcaa
attttttctttgtaatttttaaattttcagactcaaggatagttgaccta
acagaaaatgtataacatgtcaaagtTTTTTTAGCGATATCAggcagaaa
tttatattttgtatgtgacaaatttgaaaaattcactatggtcagagccc
ttaactacATACGTCTGCTAAACGGTGATAAGTGTAAGGGTAGAGACTGA
CTATATTGTAATTTCTCAATGGAATAGAAAAACACAGAATTTTCCCAGAA
ATATAGTTCATGAATTCATGAATTCACTTAATTATATTTAGATATTTGTT
TGGAAAGATACTTTGGTTACTGTATTGATACTCGCACCCCGACAAAGACG
AACAATCATTTCGGCATACTTGATTCTTTGTCTCATTGCGTAAACAGATG
CATCAGGTATTATTGCTTTTTGGCCTTTCAGCGATGACATTGTTTGGTAA
ATAACACGTCTTGTGGATTAAATTTCGAGGGGaataattttcgcgaattt
tgggtATGTTCGGAAAAACTAGTCCTCGCgaagaatttaaaaatcagAAT
TTCGCCGAAAACcactaggaaaatgaaagaaatttgtggAAAAGAGGCTG
ATTCACGAAATTTTATCcaatccacgcaaaaattttggattctcaattcg
cgaaaatcgATCCACTTGAGGTACACCTGTCAAACCTCAAAGCATGAAGA
GATTGAGTTAGAGTTTACCAGGAAGGATTGACATCAAAATGTCTGAAGCA
GTCTAcacattaccgagtttatgtatgtgtggtTTTCTACAACGGGAACG
GTAAGGGTGGCGACCCATCCTTACGTGGTCAAATCCAAGGAACATTTATA
AATATGCTTCTAAGTTAATATTAGAGCCCTATAAAAACGAATTCCCAGGG
AAGAcaccccccaaaaaaaaagactaacatacacgtttttttttttaaga
aactagttttaccaagcagcctcaatgtttcttaagaaatcggccttttg
agccttaaaaatgtttcttacatgtttctaaactttttgacatgatcagc
ctatttttcatgcaaagatttgaaggttctaaaaaaaacgttttaaaaat
gttattttctcattctcagcctcagcatgtttcttagatgtttcttagtt
tttaggcattctgagcctcatgtttcttaaaagtgtgtttcttaaaaaaa
aaagagacgTGTATTGACAACTGAGTAAAGaaggaaagttttttcaaaaa
ctaatcTGAACCAATTGAAATCTTTTTAACTTCAGGGAAGAGGCAGATGG
TTGTGATTATCACATCCGACAAAGTGATGGTAAAGCATGGTGCACTGCAA
GATATGGAGGAGGTTACTCAGACACTGAGCCTCAGACGTCTCCTATGGGA
TGCTTtacaattataagaaaaaattgcaTGAGAAATACTAGTgagtttaa
aattttgaaatttcgtaaacagttttcttttcctttttttcgaTAAAATA
AACTGATTCCTTAATAAACCCTCTTCATCGAAAGTTTTACTAAACATTGG
CTACATTGGTCCTGATTTGTCATTGGTCAAAGCAGACTCATAATCTTAGA
TGGAAGATGGATTTCACACAACAAAATCCGCTGGGACAGATAAataaatt
cactccattaagaattagtgaataagattCACTAAAAAGAAAAGGTGTGG
TGGTGAAAGAAAATCCGCCACATTAAGTGGGGTGATCCACCACACCTAGC
AAATAACAACATGCAACAAGAGTGAACACTGGGCAGTTCGCATCAAGAGA
CTGGTACTTCTCGCAGATCCATCTGGATCTCCCGTATTGGTGGATGTTGA
ACATTTGCTCAACTGGCTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCccttttttttttct
actttagtatgtttcatttttcatcttagTTATATACTTTTTGTGGTCAC
TTTAGCTTTAGGAGGTGCTGTGATCCTCACCTTTTGGTGAGGCCTATCCC
CTTGCGTGGGAAGGCATCTGTCTGTCTTAATCCGCTGGGACGGAtaatta
tttatatttatttcattttactctTTTCAGCTTTGACGTGCCTTTATGTG
AACGGTGACTGGTTCGGCCACTCAGAATTAAAGTACAGCCAGCCGTCAGT
ACTAACTGAAGGTTTTTGcagaaaagtttgttttgatagaAGGAGAGAGA
TGGATGATACAATCAATGCAATGAAGTATGATGTCACGTAAGTGAGACAT
CTTAAGGCaacttattttcatatttttcggTGTCGACTAGAAAGGtctat
tgcaaaaactaattcTGCAAAGTAAAATCTATATATACAAAcccctaaaa
atgtaaaatctTGGCAAACAATTTATTTGCtatccaggggggggggcagg
gtccaggataccaacccagggcccaaaaacctgactttttgagatttgaa
agtagtagacaccaccaccccctaaattggtatcaataccaacttgaaaa
ccccaattttcgaaaaaaagggggacccaccccccaaaattggtatcgat
accaacatgaaaatccagattttctgaaaaatgggggacccaccccccta
aattggcatcgatacgaacttgaaaatccagatttttctgaaaaaggggg
accACCCCCCCCTAAATTGGCAATCAGTAAAAATGCAAGAAGTTATATGC
ATAGAATACTGCATACAAGGGATGCTAAACAAAAtctgtggatgttttta
ttcaaagaacattcctcTTATTTATCACTTATATTATGTACCACACTTAA
Gactcctgaaaataaaaacaagtttttctcattctaacacaacgtaaatt
aagtttcttgaactaaattggcaaaatgtatcaaattcataaaattagTT
GATAAACTGGAGTAGATAAAAAACTCATTGTATTAGGCATGCCTAGAGTC
TACCCCGTTGTAACATAGCCTATTATGATGAACGTTATGTACAGAAAAAC
TATATCAGTCACGACTACAAAAGTTCTAAGATCTGCTAAGACTTGATTCA
GTTTGTTCAActctagttttgaatgaattttgaaatgaagaatgttttta
tatggaatcagggtatagtgtaaacgattcaaataagtttttatacttac
attatacaacattttaagtcagataccaatttcaaattcagcaaaaatta
aaaaaaaaaccctcattttggtatcaataccaacttaaagattctctaat
tttcaaaaaagggggacccaccccctcattttggtatcaataccaacttg
gctttttgaaatttgaaaaaaaaaattgacaccacccCCCGGCCCTGGTA
TCTGGATCCTGACCCCCCCTGTGCTATCTGGATTCATACCAATACATTCT
CTTCCAAAAATAGCAAGTTTGAGAATAAAGAACCACTTCTTTTTCAGCTA
ACTTGGACTAAAgaagtaaatttttctttttctttttttatttataaatt
cGAGGTTTCTACTGTTAATCCAACAAGGTGTAGACTATTATATGCATGCA
ATTATTTATGTGACAAAGTAGGCATGTCTTGTATTCCGATTTCTGAATGC
ATTCAACTCTTTCACaaatatttttctcagaaaCTCCATTTGCAATTGTA
TGAAGGCAATAACATATACTGAAAATCCAAACGATACAAACAGAATTTGT
CTTATCCAAGAACAAAGCGAATTACAATAATGTAAAGGTAGATAAATCTC
TCGTTAATTTAAGCGGATTAATTCATGCAGAATTTATTTTCGCAGtttgt
gcaaatttttgccaatttcacAAAAGTACAACTCGCAAAATTGTGTGATT
AATATCAACGTAATTTTAACGTACTGTAGAGAAAATTGTTGTCTTTATTT
CTAATTGTAAAAAAAAGCAAATAGTGTTTCAGATTTTAAGACTCACATAG
ATTTAGGAATCATAAAAGAGAACCATCAGCCTTAAtagatttctgatttt
tttcatgaattttgcccttatgtattacgaagtgattttttttactttct
aaCAGGGTGCAGTCACACTAAAGAAATGACACTTACTTTGTGTGGATCAT
TCCGATGCATACAGCAAGCAGTTAAGCGCTCCAGAATGTTTCTCATGTGG
TGTTCAGTTGCATGCGATATGACAGCCATTGCATCATTTGTAACCTCTCC
AATACCGTGAAGATGGACTGGAGAAAGATTTTTATAAACATTGTTTAAAT
CAGAGTTTCTTAAAGTATTACATTCCGAG

Coding sequence (CDS) from alignment at sc0000122:65267..73895+

>TCONS_00011164 ID=TCONS_00011164|Name=TCONS_00011164|organism=Clytia hemisphaerica|type=CDS|length=5634bp|location=Sequence derived from alignment at sc0000122:65267..73895+ (Clytia hemisphaerica)
aTGACCAGGACTTGGATTAAATTGCTCTTCCTTTGTGTTGTGAAGTATAT
TACCAGTAGTAAGAGAAAACCATCATTAACATTCAACGATGCTCGAAGGA
ATTTTCGACTTGAAACACAAGTATTGATATGTATCCCTGAAGAAAGACTC
CCAAAATGCATAGCGCATTGCTTGAATAAACCCACATGCCTTGCGGTCAA
TTTCAATGCTGAGCTGAGGAAATGTGAACTACTTGGCACCACAGCGAATG
AAAGGCCAAACCAAGGAAAGGATGCTAAGGGATGGCTTTACTATGGACCC
AGAGAAGAGGATGTACGGAAAGAAAATTGTGAATTTGCAGATCTGCAAAA
TACACAtggtgaaaaatattgttgtcCAAAAGGAAAAAGCGGAAATCGTT
GTCAGTACACAAATATTTGTTTGGAAAGATACTTTGGTTACTGTATTGAT
ACTCGCACCCCGACAAAGACGAACAATCATTTCGGCATACTTGATTCTTT
GTCTCATTGCGTAAACAGATGCATCAGGGAAGAGGCAGATGGTTGTGATT
ATCACATCCGACAAAGTGATGGTAAAGCATGGTGCACTGCAAGATATGGA
GGAGGTTACTCAGACACTGAGCCTCAGACGTCTCCTATGGGATGCTTtac
aattataagaaaaaattgcaTGAGAAATACTACTTTGACGTGCCTTTATG
TGAACGGTGACTGGTTCGGCCACTCAGAATTAAAGTACAGCCAGCCGTCA
GTACTAACTGAAGGTTTTTGcagaaaagtttgttttgatagaAGGAGAGA
GATGGATGATACAATCAATGCAATGAAGTATGATGTCACaaaCTCCATTT
GCAATTGTATGAAGGCAATAACATATACTGAAAATCCAAACGATACAAAC
AGAATTTGTCTTATCCAAGAACAAAGCGAATTACAATAAaTGACCAGGAC
TTGGATTAAATTGCTCTTCCTTTGTGTTGTGAAGTATATTACCAGTAGTA
AGAGAAAACCATCATTAACATTCAACGATGCTCGAAGGAATTTTCGACTT
GAAACACAAGTATTGATATGTATCCCTGAAGAAAGACTCCCAAAATGCAT
AGCGCATTGCTTGAATAAACCCACATGCCTTGCGGTCAATTTCAATGCTG
AGCTGAGGAAATGTGAACTACTTGGCACCACAGCGAATGAAAGGCCAAAC
CAAGGAAAGGATGCTAAGGGATGGCTTTACTATGGACCCAGAGAAGAGGA
TGTACGGAAAGAAAATTGTGAATTTGCAGATCTGCAAAATACACAtggtg
aaaaatattgttgtcCAAAAGGAAAAAGCGGAAATCGTTGTCAGTACACA
AATATTTGTTTGGAAAGATACTTTGGTTACTGTATTGATACTCGCACCCC
GACAAAGACGAACAATCATTTCGGCATACTTGATTCTTTGTCTCATTGCG
TAAACAGATGCATCAGGGAAGAGGCAGATGGTTGTGATTATCACATCCGA
CAAAGTGATGGTAAAGCATGGTGCACTGCAAGATATGGAGGAGGTTACTC
AGACACTGAGCCTCAGACGTCTCCTATGGGATGCTTtacaattataagaa
aaaattgcaTGAGAAATACTACTTTGACGTGCCTTTATGTGAACGGTGAC
TGGTTCGGCCACTCAGAATTAAAGTACAGCCAGCCGTCAGTACTAACTGA
AGGTTTTTGcagaaaagtttgttttgatagaAGGAGAGAGATGGATGATA
CAATCAATGCAATGAAGTATGATGTCACaaaCTCCATTTGCAATTGTATG
AAGGCAATAACATATACTGAAAATCCAAACGATACAAACAGAATTTGTCT
TATCCAAGAACAAAGCGAATTACAATAAaTGACCAGGACTTGGATTAAAT
TGCTCTTCCTTTGTGTTGTGAAGTATATTACCAGTAGTAAGAGAAAACCA
TCATTAACATTCAACGATGCTCGAAGGAATTTTCGACTTGAAACACAAGT
ATTGATATGTATCCCTGAAGAAAGACTCCCAAAATGCATAGCGCATTGCT
TGAATAAACCCACATGCCTTGCGGTCAATTTCAATGCTGAGCTGAGGAAA
TGTGAACTACTTGGCACCACAGCGAATGAAAGGCCAAACCAAGGAAAGGA
TGCTAAGGGATGGCTTTACTATGGACCCAGAGAAGAGGATGTACGGAAAG
AAAATTGTGAATTTGCAGATCTGCAAAATACACAtggtgaaaaatattgt
tgtcCAAAAGGAAAAAGCGGAAATCGTTGTCAGTACACAAATATTTGTTT
GGAAAGATACTTTGGTTACTGTATTGATACTCGCACCCCGACAAAGACGA
ACAATCATTTCGGCATACTTGATTCTTTGTCTCATTGCGTAAACAGATGC
ATCAGGGAAGAGGCAGATGGTTGTGATTATCACATCCGACAAAGTGATGG
TAAAGCATGGTGCACTGCAAGATATGGAGGAGGTTACTCAGACACTGAGC
CTCAGACGTCTCCTATGGGATGCTTtacaattataagaaaaaattgcaTG
AGAAATACTACTTTGACGTGCCTTTATGTGAACGGTGACTGGTTCGGCCA
CTCAGAATTAAAGTACAGCCAGCCGTCAGTACTAACTGAAGGTTTTTGca
gaaaagtttgttttgatagaAGGAGAGAGATGGATGATACAATCAATGCA
ATGAAGTATGATGTCACaaaCTCCATTTGCAATTGTATGAAGGCAATAAC
ATATACTGAAAATCCAAACGATACAAACAGAATTTGTCTTATCCAAGAAC
AAAGCGAATTACAATAAaTGACCAGGACTTGGATTAAATTGCTCTTCCTT
TGTGTTGTGAAGTATATTACCAGTAGTAAGAGAAAACCATCATTAACATT
CAACGATGCTCGAAGGAATTTTCGACTTGAAACACAAGTATTGATATGTA
TCCCTGAAGAAAGACTCCCAAAATGCATAGCGCATTGCTTGAATAAACCC
ACATGCCTTGCGGTCAATTTCAATGCTGAGCTGAGGAAATGTGAACTACT
TGGCACCACAGCGAATGAAAGGCCAAACCAAGGAAAGGATGCTAAGGGAT
GGCTTTACTATGGACCCAGAGAAGAGGATGTACGGAAAGAAAATTGTGAA
TTTGCAGATCTGCAAAATACACAtggtgaaaaatattgttgtcCAAAAGG
AAAAAGCGGAAATCGTTGTCAGTACACAAATATTTGTTTGGAAAGATACT
TTGGTTACTGTATTGATACTCGCACCCCGACAAAGACGAACAATCATTTC
GGCATACTTGATTCTTTGTCTCATTGCGTAAACAGATGCATCAGGGAAGA
GGCAGATGGTTGTGATTATCACATCCGACAAAGTGATGGTAAAGCATGGT
GCACTGCAAGATATGGAGGAGGTTACTCAGACACTGAGCCTCAGACGTCT
CCTATGGGATGCTTtacaattataagaaaaaattgcaTGAGAAATACTAC
TTTGACGTGCCTTTATGTGAACGGTGACTGGTTCGGCCACTCAGAATTAA
AGTACAGCCAGCCGTCAGTACTAACTGAAGGTTTTTGcagaaaagtttgt
tttgatagaAGGAGAGAGATGGATGATACAATCAATGCAATGAAGTATGA
TGTCACaaaCTCCATTTGCAATTGTATGAAGGCAATAACATATACTGAAA
ATCCAAACGATACAAACAGAATTTGTCTTATCCAAGAACAAAGCGAATTA
CAATAAaTGACCAGGACTTGGATTAAATTGCTCTTCCTTTGTGTTGTGAA
GTATATTACCAGTAGTAAGAGAAAACCATCATTAACATTCAACGATGCTC
GAAGGAATTTTCGACTTGAAACACAAGTATTGATATGTATCCCTGAAGAA
AGACTCCCAAAATGCATAGCGCATTGCTTGAATAAACCCACATGCCTTGC
GGTCAATTTCAATGCTGAGCTGAGGAAATGTGAACTACTTGGCACCACAG
CGAATGAAAGGCCAAACCAAGGAAAGGATGCTAAGGGATGGCTTTACTAT
GGACCCAGAGAAGAGGATGTACGGAAAGAAAATTGTGAATTTGCAGATCT
GCAAAATACACAtggtgaaaaatattgttgtcCAAAAGGAAAAAGCGGAA
ATCGTTGTCAGTACACAAATATTTGTTTGGAAAGATACTTTGGTTACTGT
ATTGATACTCGCACCCCGACAAAGACGAACAATCATTTCGGCATACTTGA
TTCTTTGTCTCATTGCGTAAACAGATGCATCAGGGAAGAGGCAGATGGTT
GTGATTATCACATCCGACAAAGTGATGGTAAAGCATGGTGCACTGCAAGA
TATGGAGGAGGTTACTCAGACACTGAGCCTCAGACGTCTCCTATGGGATG
CTTtacaattataagaaaaaattgcaTGAGAAATACTACTTTGACGTGCC
TTTATGTGAACGGTGACTGGTTCGGCCACTCAGAATTAAAGTACAGCCAG
CCGTCAGTACTAACTGAAGGTTTTTGcagaaaagtttgttttgatagaAG
GAGAGAGATGGATGATACAATCAATGCAATGAAGTATGATGTCACaaaCT
CCATTTGCAATTGTATGAAGGCAATAACATATACTGAAAATCCAAACGAT
ACAAACAGAATTTGTCTTATCCAAGAACAAAGCGAATTACAATAAaTGAC
CAGGACTTGGATTAAATTGCTCTTCCTTTGTGTTGTGAAGTATATTACCA
GTAGTAAGAGAAAACCATCATTAACATTCAACGATGCTCGAAGGAATTTT
CGACTTGAAACACAAGTATTGATATGTATCCCTGAAGAAAGACTCCCAAA
ATGCATAGCGCATTGCTTGAATAAACCCACATGCCTTGCGGTCAATTTCA
ATGCTGAGCTGAGGAAATGTGAACTACTTGGCACCACAGCGAATGAAAGG
CCAAACCAAGGAAAGGATGCTAAGGGATGGCTTTACTATGGACCCAGAGA
AGAGGATGTACGGAAAGAAAATTGTGAATTTGCAGATCTGCAAAATACAC
AtggtgaaaaatattgttgtcCAAAAGGAAAAAGCGGAAATCGTTGTCAG
TACACAAATATTTGTTTGGAAAGATACTTTGGTTACTGTATTGATACTCG
CACCCCGACAAAGACGAACAATCATTTCGGCATACTTGATTCTTTGTCTC
ATTGCGTAAACAGATGCATCAGGGAAGAGGCAGATGGTTGTGATTATCAC
ATCCGACAAAGTGATGGTAAAGCATGGTGCACTGCAAGATATGGAGGAGG
TTACTCAGACACTGAGCCTCAGACGTCTCCTATGGGATGCTTtacaatta
taagaaaaaattgcaTGAGAAATACTACTTTGACGTGCCTTTATGTGAAC
GGTGACTGGTTCGGCCACTCAGAATTAAAGTACAGCCAGCCGTCAGTACT
AACTGAAGGTTTTTGcagaaaagtttgttttgatagaAGGAGAGAGATGG
ATGATACAATCAATGCAATGAAGTATGATGTCACaaaCTCCATTTGCAAT
TGTATGAAGGCAATAACATATACTGAAAATCCAAACGATACAAACAGAAT
TTGTCTTATCCAAGAACAAAGCGAATTACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006260XLOC_006260Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011164-proteinTCONS_00011164-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011164-exon-sc0000122-1491911889:65267..65683TCONS_00011164-exon-sc0000122-1491911889:65267..65683Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1510915933:65267..65683TCONS_00011164-exon-sc0000122-1510915933:65267..65683Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1575043694:65267..65683TCONS_00011164-exon-sc0000122-1575043694:65267..65683Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1491911889:66086..66188TCONS_00011164-exon-sc0000122-1491911889:66086..66188Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1510915933:66086..66188TCONS_00011164-exon-sc0000122-1510915933:66086..66188Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1575043694:66086..66188TCONS_00011164-exon-sc0000122-1575043694:66086..66188Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1491911889:67158..67272TCONS_00011164-exon-sc0000122-1491911889:67158..67272Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1510915933:67158..67272TCONS_00011164-exon-sc0000122-1510915933:67158..67272Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1575043694:67158..67272TCONS_00011164-exon-sc0000122-1575043694:67158..67272Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1491911889:68152..68306TCONS_00011164-exon-sc0000122-1491911889:68152..68306Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1510915933:68152..68306TCONS_00011164-exon-sc0000122-1510915933:68152..68306Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1575043694:68152..68306TCONS_00011164-exon-sc0000122-1575043694:68152..68306Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1491911889:71697..71853TCONS_00011164-exon-sc0000122-1491911889:71697..71853Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1510915933:71697..71853TCONS_00011164-exon-sc0000122-1510915933:71697..71853Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1575043694:71697..71853TCONS_00011164-exon-sc0000122-1575043694:71697..71853Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1491911889:73247..73353TCONS_00011164-exon-sc0000122-1491911889:73247..73353Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1510915933:73247..73353TCONS_00011164-exon-sc0000122-1510915933:73247..73353Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1575043694:73247..73353TCONS_00011164-exon-sc0000122-1575043694:73247..73353Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1491911889:73672..73895TCONS_00011164-exon-sc0000122-1491911889:73672..73895Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1510915933:73672..73895TCONS_00011164-exon-sc0000122-1510915933:73672..73895Clytia hemisphaericaexon
TCONS_00011164-exon-sc0000122-1575043694:73672..73895TCONS_00011164-exon-sc0000122-1575043694:73672..73895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:65267..73895 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.278028	0.31196	0.597867	0.507309	0.0896279	0.0707329	2.61696	3.02618	4.27597	2.73361	0.922908	2.63159	2.5404	1.84465	0.0594025	0.0837654	0.388738	0.369687	6.23248	2.33067	0.6145	0.397152	1.78644	3.51443	3.28021	4.52391	0.379025	0	0.0795684	0.0401843
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003609Pan_app
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top