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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011163 ID=TCONS_00011163|Name=TCONS_00011163|organism=Clytia hemisphaerica|type=transcript|length=2034bp
gtttatatttttagatgACTTCTAACAAACAAAATATAGTTTTATTGAAT
GGAGAATTGAAGATCAGACCTTATGTTGACAATGAACAGTTGAAAGAGAT
TGTTTTACAATGTTTTGGTCTTGAACTTGATGGAGACAGTGAACCTGTAG
AAATGGTGTCATATGATGATCGTAACTTTCGGATAAAAGGGAAACTGAAG
GGCCAAGACGAAACAAaacaatttgttttgaaaatcttcAATAGTGGATC
TGCTAGTAAAGGAGTATTGGAATCTGTTGTCAAACTGATGTCACATTGTG
CTTCAAAAAGTATGGGAGGTTTTGCTGTTCAAACTCCTGTTCCTTCGATC
AAGTCTAATGGTGAAGATGCTCCACAATTCATTGCTTCTTATCACATTCC
AGTTCTTGGTGAAGCTTGTTATGATGGTTGCACCAAAGAAAAGTTGATAA
ACAAAGGATTACTCAGTGTTGGTGAAAACAATGTTGTGACTTGTTCCCAT
GATATTCGATTAGTGACCTTTCTGGAAGGAAAAGTTCCTGATTACAGCAA
AGAGAATTGTTCGGATACCTTTGCTGAGGATACGGGAAGAACTTGTGCGA
ACCTTTGCAATGCTATGTTGGATGTACCCCAATTTAAAGATGTTGATCGA
ACAGGTTGGATCTGGGATCTCCTCTCATGtggtaaaatattgaaaaattc
ttGCCTCAATGTCATCAAAGATATGGCACTGAAAAAGGTTCTCGAGGACG
TTATCAATGAATTTGAAAACAAGACAATTCCAGAGCTGGATAAACATTTC
ACTAAATCGTACATCCATGGTGATCTGAATGAACAGAATCTTTTGATCAG
TAATGAGGACAAAGTTGCCGGTATTCTTGATTTTGACGATGTCGTGTGGT
CATATCCAGTCATCGATCTTGCTACTTCAATGATGTATCTATCTGTAGGT
TGTAGTGAAAAAGATATGATTCATAAATTAAACATGATGTATAAAGGGTA
TAATTCAATTCGCAAGTTGTCAGAGGTTGAGAAATCTCTACTGTTTAATA
TCTGTTTGATGAGGTACGCTCAATCAACCTCTGTATCTATTTATCAACAC
GAAGTTATTGACCCTACTAATGATTATTTGTTACTTCACACTaagaataa
ttttcaaaagatgaGTTTTTTGATTGGGCTTGGCCCTGATGAGTTCATGA
AAAGAGTATGTTCCGAATGattggttttcttgaattggAGGTCTGCTCTT
GAATGGCATTGGGTTCGACTGACGATTCCTGCATTAAtaaacacgcatgc
gtaatttatcgttctttaaaACCATAATTGTTAATCTTTGcaataaaaga
gaaaatatgaGGTAGACAaactacagtatgtggcccccaaaacgccgatc
aaatttaaaatttctctcaaatctagaggcaaagaggttttacaaaagtt
tttgctgcatgaaaaactttaacatctttaCTTTATTTCCccgaagttct
ttttcaaaatctttaatttcaataacatttttcaatcgcttaaagatagg
tagcttttttctaatggcccccaaaacggaggtttgcaattttagcgatt
tctcgagatatctttaagatatgaatacaaagttttgaccatagttttga
aaatatgatttagagggttttgggctaaatttgtttgataaaatttttac
agtatagccctggttgtcaaaacacaggtttggggcccccagaacgtagg
tgtagttaaaatcaaattattaagcccagtggtaataccCCCCGTACTTA
gacaaaaatggatgatgggtatagGCGGACGGTAAGAGTcggttttttca
cttttcaaagtctctctaagggtcggaaaactcagaaagttttaaattac
cttaagcggattaattttcgcgattttcgcgtattttggccattttcgcg
aacttttgtccacgcgaaatttttagaattgcaatttttgccaaaacccc
taggaaaatgaaagaaattaggtaaaaaacaggc Run BLAST on NCBI protein sequence of TCONS_00011163-protein >TCONS_00011163-protein ID=TCONS_00011163-protein|Name=TCONS_00011163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=401bp
MTSNKQNIVLLNGELKIRPYVDNEQLKEIVLQCFGLELDGDSEPVEMVSY
DDRNFRIKGKLKGQDETKQFVLKIFNSGSASKGVLESVVKLMSHCASKSM
GGFAVQTPVPSIKSNGEDAPQFIASYHIPVLGEACYDGCTKEKLINKGLL
SVGENNVVTCSHDIRLVTFLEGKVPDYSKENCSDTFAEDTGRTCANLCNA
MLDVPQFKDVDRTGWIWDLLSCGKILKNSCLNVIKDMALKKVLEDVINEF
ENKTIPELDKHFTKSYIHGDLNEQNLLISNEDKVAGILDFDDVVWSYPVI
DLATSMMYLSVGCSEKDMIHKLNMMYKGYNSIRKLSEVEKSLLFNICLMR
YAQSTSVSIYQHEVIDPTNDYLLLHTKNNFQKMSFLIGLGPDEFMKRVCS
E Run BLAST on NCBI transcript from alignment at sc0000122:19013..22139+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011163 ID=TCONS_00011163|Name=TCONS_00011163|organism=Clytia hemisphaerica|type=transcript|length=3127bp|location=Sequence derived from alignment at sc0000122:19013..22139+ (Clytia hemisphaerica)
gtttatatttttagatgACTTCTAACAAACAAAATATAGTTTTATTGAAT
GGAGAATTGAAGATCAGACCTTATGTTGACAATGAACAGTTGAAAGAGAT
TGTTTTACAATGTTTTGGTCTTGAACTTGATGGAGACAGTGAACCTGTAG
AAATGGTGTCATATGATGATCGTAACTTTCGGATAAAAGGTAAAGACTCT
CCTAAAATAAAGCTCCGTCTATTTGGAccacaaattttttcaaaatactt
tgACTAAATATATTGATAATGAGCTTTATTAAAGTCCATAGTGTGGATTC
TTTTTTGCTACCCTGTGGAAACCATCTCAAGGGAAGCAATCTAATAAATG
GTTTCCATATGTTTGAATAGAAGAATGCACTTTTAAATCAAATGGACTTC
CATAGGAGTTTTTATCCTATTGTATATGCCGGTCATTAATTCAATGAAAA
TGCCAGAGGTACTGGATTTAGAGAATGTTGGGTATGTGCAGACCAGACCT
CTGAAAACTGATTCTTAGAGAAACTAGGATTTTTTTGGCAAAAGGCCACC
CTAAGAGATATATAATCGGTGAAAAAAGTGACTTTTCATGGTTATCGAAC
CCGTAGAGATGCCCAAAAGGGGGAAATTCTCGACCCTTAGGGagactttt
tttgactttctaTTGTCACCCTTTAAGGTTAAACCCAGGAGGGGAGTCCT
AGGtgtaaaactaataaaaataaaatatctatAATTCCAGGGAAACTGAA
GGGCCAAGACGAAACAAaacaatttgttttgaaaatcttcAATAGTGGAT
CTGCTAGTAAAGGAGTATTGGAATCTGTTGTCAAACTGATGTCACATTGT
GCTTCAAAAAGTATGGGAGGTTTTGCTGTTCAAACTCCTGTTCCTTCGAT
CAAGTCTAATGGTGAAGATGCTCCACAATTCATTGCTTCTTATCACATTC
CAGTTCTTGGTGAAGCTTGTTATGATGGTTGCACCAAAGAAAAGTTGATA
AACAAAGGATTACTCAGTGTTGGTGAAAACAATGTTGTGACTTGTTCCCA
TGATATTCGATTAGTGACCTTTCTGGAAGGAAAAGTTCCTGATTACAGCA
AAGAGAATTGTTCGGATACCTTTGCTGAGGATACGGGAAGAACTTGTGCG
AACCTTTGCAATGCTATGTTGGTAAGTTTAACGCTTGATTTCACGTTTTG
TCAGAGACTGTTTTTGAGAGTTCAAATTAATCTTCTTGTACCGCCACAGA
acctttcatttttcaaacagGATACGTTTTAAAGTAgcgtagcgtagcca
agaggggcacaatatttgtgtaggagaacagatttttatgacactaatta
tatttttacattatgaatagataattacagtgtcatgaAAATCTGCCCTC
CCACACAAATTTTGCGtacctcctgtctacgctactgttttATATGAAAG
agcttttcaaactttcaaaaaaaattcctatccattctaaatttgaattt
tctttgaaaatctcGAGTTTATaaatagtgaggtctgttagcacatatAT
GGtaataaaagcatgaaatttggtgtAGACGACCCTTAGAGTGcccaaaa
cttaattttaatGAGTGACACCAAATTATGTCACCTTACCACGTGCCAGA
TGACTGTGTTATTATCAAGTGGAAACATTGATAATGAGTAGATCGAATCT
TAATTTCCTACAGGATGTACCCCAATTTAAAGATGTTGATCGAACAGGTT
GGATCTGGGATCTCCTCTCATGtggtaaaatattgaaaaattcttGCCTC
AATGTCATCAAAGATATGGCACTGAAAAAGGTTCTCGAGGACGTTATCAA
TGAATTTGAAAACAAGACAATTCCAGAGCTGGATAAACATTTCACTAAAT
CGTACATCCATGGTGATCTGAATGAACAGAATCTTTTGATCAGTAATGAG
GACAAAGTTGCCGGTATTCTTGATTTTGACGATGTCGTGTGGTCATATCC
AGTCATCGATCTTGCTACTTCAATGATGTATCTATCTGTAGGTTGTAGTG
AAAAAGATATGATTCATAAATTAAACATGATGTATAAAGGGTATAATTCA
ATTCGCAAGTTGTCAGAGGTTGAGAAATCTCTACTGTTTAATATCTGTTT
GATGAGGTACGCTCAATCAACCTCTGTATCTATTTATCAACACGAAGTTA
TTGACCCTACTAATGATTATTTGTTACTTCACACTaagaataattttcaa
aagatgaGTTTTTTGATTGGGCTTGGCCCTGATGAGTTCATGAAAAGAGT
ATGTTCCGAATGattggttttcttgaattggAGGTCTGCTCTTGAATGGC
ATTGGGTTCGACTGACGATTCCTGCATTAAtaaacacgcatgcgtaattt
atcgttctttaaaACCATAATTGTTAATCTTTGcaataaaagagaaaata
tgaGGTAGACAaactacagtatgtggcccccaaaacgccgatcaaattta
aaatttctctcaaatctagaggcaaagaggttttacaaaagtttttgctg
catgaaaaactttaacatctttaCTTTATTTCCccgaagttctttttcaa
aatctttaatttcaataacatttttcaatcgcttaaagataggtagcttt
tttctaatggcccccaaaacggaggtttgcaattttagcgatttctcgag
atatctttaagatatgaatacaaagttttgaccatagttttgaaaatatg
atttagagggttttgggctaaatttgtttgataaaatttttacagtatag
ccctggttgtcaaaacacaggtttggggcccccagaacgtaggtgtagtt
aaaatcaaattattaagcccagtggtaataccCCCCGTACTTAgacaaaa
atggatgatgggtatagGCGGACGGTAAGAGTcggttttttcacttttca
aagtctctctaagggtcggaaaactcagaaagttttaaattaccttaagc
ggattaattttcgcgattttcgcgtattttggccattttcgcgaactttt
gtccacgcgaaatttttagaattgcaatttttgccaaaacccctaggaaa
atgaaagaaattaggtaaaaaacaggc Coding sequence (CDS) from alignment at sc0000122:19013..22139+ >TCONS_00011163 ID=TCONS_00011163|Name=TCONS_00011163|organism=Clytia hemisphaerica|type=CDS|length=3618bp|location=Sequence derived from alignment at sc0000122:19013..22139+ (Clytia hemisphaerica)
atgACTTCTAACAAACAAAATATAGTTTTATTGAATGGAGAATTGAAGAT
CAGACCTTATGTTGACAATGAACAGTTGAAAGAGATTGTTTTACAATGTT
TTGGTCTTGAACTTGATGGAGACAGTGAACCTGTAGAAATGGTGTCATAT
GATGATCGTAACTTTCGGATAAAAGGGAAACTGAAGGGCCAAGACGAAAC
AAaacaatttgttttgaaaatcttcAATAGTGGATCTGCTAGTAAAGGAG
TATTGGAATCTGTTGTCAAACTGATGTCACATTGTGCTTCAAAAAGTATG
GGAGGTTTTGCTGTTCAAACTCCTGTTCCTTCGATCAAGTCTAATGGTGA
AGATGCTCCACAATTCATTGCTTCTTATCACATTCCAGTTCTTGGTGAAG
CTTGTTATGATGGTTGCACCAAAGAAAAGTTGATAAACAAAGGATTACTC
AGTGTTGGTGAAAACAATGTTGTGACTTGTTCCCATGATATTCGATTAGT
GACCTTTCTGGAAGGAAAAGTTCCTGATTACAGCAAAGAGAATTGTTCGG
ATACCTTTGCTGAGGATACGGGAAGAACTTGTGCGAACCTTTGCAATGCT
ATGTTGGATGTACCCCAATTTAAAGATGTTGATCGAACAGGTTGGATCTG
GGATCTCCTCTCATGtggtaaaatattgaaaaattcttGCCTCAATGTCA
TCAAAGATATGGCACTGAAAAAGGTTCTCGAGGACGTTATCAATGAATTT
GAAAACAAGACAATTCCAGAGCTGGATAAACATTTCACTAAATCGTACAT
CCATGGTGATCTGAATGAACAGAATCTTTTGATCAGTAATGAGGACAAAG
TTGCCGGTATTCTTGATTTTGACGATGTCGTGTGGTCATATCCAGTCATC
GATCTTGCTACTTCAATGATGTATCTATCTGTAGGTTGTAGTGAAAAAGA
TATGATTCATAAATTAAACATGATGTATAAAGGGTATAATTCAATTCGCA
AGTTGTCAGAGGTTGAGAAATCTCTACTGTTTAATATCTGTTTGATGAGG
TACGCTCAATCAACCTCTGTATCTATTTATCAACACGAAGTTATTGACCC
TACTAATGATTATTTGTTACTTCACACTaagaataattttcaaaagatga
GTTTTTTGATTGGGCTTGGCCCTGATGAGTTCATGAAAAGAGTATGTTCC
GAATGaatgACTTCTAACAAACAAAATATAGTTTTATTGAATGGAGAATT
GAAGATCAGACCTTATGTTGACAATGAACAGTTGAAAGAGATTGTTTTAC
AATGTTTTGGTCTTGAACTTGATGGAGACAGTGAACCTGTAGAAATGGTG
TCATATGATGATCGTAACTTTCGGATAAAAGGGAAACTGAAGGGCCAAGA
CGAAACAAaacaatttgttttgaaaatcttcAATAGTGGATCTGCTAGTA
AAGGAGTATTGGAATCTGTTGTCAAACTGATGTCACATTGTGCTTCAAAA
AGTATGGGAGGTTTTGCTGTTCAAACTCCTGTTCCTTCGATCAAGTCTAA
TGGTGAAGATGCTCCACAATTCATTGCTTCTTATCACATTCCAGTTCTTG
GTGAAGCTTGTTATGATGGTTGCACCAAAGAAAAGTTGATAAACAAAGGA
TTACTCAGTGTTGGTGAAAACAATGTTGTGACTTGTTCCCATGATATTCG
ATTAGTGACCTTTCTGGAAGGAAAAGTTCCTGATTACAGCAAAGAGAATT
GTTCGGATACCTTTGCTGAGGATACGGGAAGAACTTGTGCGAACCTTTGC
AATGCTATGTTGGATGTACCCCAATTTAAAGATGTTGATCGAACAGGTTG
GATCTGGGATCTCCTCTCATGtggtaaaatattgaaaaattcttGCCTCA
ATGTCATCAAAGATATGGCACTGAAAAAGGTTCTCGAGGACGTTATCAAT
GAATTTGAAAACAAGACAATTCCAGAGCTGGATAAACATTTCACTAAATC
GTACATCCATGGTGATCTGAATGAACAGAATCTTTTGATCAGTAATGAGG
ACAAAGTTGCCGGTATTCTTGATTTTGACGATGTCGTGTGGTCATATCCA
GTCATCGATCTTGCTACTTCAATGATGTATCTATCTGTAGGTTGTAGTGA
AAAAGATATGATTCATAAATTAAACATGATGTATAAAGGGTATAATTCAA
TTCGCAAGTTGTCAGAGGTTGAGAAATCTCTACTGTTTAATATCTGTTTG
ATGAGGTACGCTCAATCAACCTCTGTATCTATTTATCAACACGAAGTTAT
TGACCCTACTAATGATTATTTGTTACTTCACACTaagaataattttcaaa
agatgaGTTTTTTGATTGGGCTTGGCCCTGATGAGTTCATGAAAAGAGTA
TGTTCCGAATGaatgACTTCTAACAAACAAAATATAGTTTTATTGAATGG
AGAATTGAAGATCAGACCTTATGTTGACAATGAACAGTTGAAAGAGATTG
TTTTACAATGTTTTGGTCTTGAACTTGATGGAGACAGTGAACCTGTAGAA
ATGGTGTCATATGATGATCGTAACTTTCGGATAAAAGGGAAACTGAAGGG
CCAAGACGAAACAAaacaatttgttttgaaaatcttcAATAGTGGATCTG
CTAGTAAAGGAGTATTGGAATCTGTTGTCAAACTGATGTCACATTGTGCT
TCAAAAAGTATGGGAGGTTTTGCTGTTCAAACTCCTGTTCCTTCGATCAA
GTCTAATGGTGAAGATGCTCCACAATTCATTGCTTCTTATCACATTCCAG
TTCTTGGTGAAGCTTGTTATGATGGTTGCACCAAAGAAAAGTTGATAAAC
AAAGGATTACTCAGTGTTGGTGAAAACAATGTTGTGACTTGTTCCCATGA
TATTCGATTAGTGACCTTTCTGGAAGGAAAAGTTCCTGATTACAGCAAAG
AGAATTGTTCGGATACCTTTGCTGAGGATACGGGAAGAACTTGTGCGAAC
CTTTGCAATGCTATGTTGGATGTACCCCAATTTAAAGATGTTGATCGAAC
AGGTTGGATCTGGGATCTCCTCTCATGtggtaaaatattgaaaaattctt
GCCTCAATGTCATCAAAGATATGGCACTGAAAAAGGTTCTCGAGGACGTT
ATCAATGAATTTGAAAACAAGACAATTCCAGAGCTGGATAAACATTTCAC
TAAATCGTACATCCATGGTGATCTGAATGAACAGAATCTTTTGATCAGTA
ATGAGGACAAAGTTGCCGGTATTCTTGATTTTGACGATGTCGTGTGGTCA
TATCCAGTCATCGATCTTGCTACTTCAATGATGTATCTATCTGTAGGTTG
TAGTGAAAAAGATATGATTCATAAATTAAACATGATGTATAAAGGGTATA
ATTCAATTCGCAAGTTGTCAGAGGTTGAGAAATCTCTACTGTTTAATATC
TGTTTGATGAGGTACGCTCAATCAACCTCTGTATCTATTTATCAACACGA
AGTTATTGACCCTACTAATGATTATTTGTTACTTCACACTaagaataatt
ttcaaaagatgaGTTTTTTGATTGGGCTTGGCCCTGATGAGTTCATGAAA
AGAGTATGTTCCGAATGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011163-exon-sc0000122-1491911889:19013..19201 | TCONS_00011163-exon-sc0000122-1491911889:19013..19201 | Clytia hemisphaerica | exon |
| TCONS_00011163-exon-sc0000122-1510915933:19013..19201 | TCONS_00011163-exon-sc0000122-1510915933:19013..19201 | Clytia hemisphaerica | exon |
| TCONS_00011163-exon-sc0000122-1575043694:19013..19201 | TCONS_00011163-exon-sc0000122-1575043694:19013..19201 | Clytia hemisphaerica | exon |
| TCONS_00011163-exon-sc0000122-1491911889:19753..20183 | TCONS_00011163-exon-sc0000122-1491911889:19753..20183 | Clytia hemisphaerica | exon |
| TCONS_00011163-exon-sc0000122-1510915933:19753..20183 | TCONS_00011163-exon-sc0000122-1510915933:19753..20183 | Clytia hemisphaerica | exon |
| TCONS_00011163-exon-sc0000122-1575043694:19753..20183 | TCONS_00011163-exon-sc0000122-1575043694:19753..20183 | Clytia hemisphaerica | exon |
| TCONS_00011163-exon-sc0000122-1491911889:20726..22139 | TCONS_00011163-exon-sc0000122-1491911889:20726..22139 | Clytia hemisphaerica | exon |
| TCONS_00011163-exon-sc0000122-1510915933:20726..22139 | TCONS_00011163-exon-sc0000122-1510915933:20726..22139 | Clytia hemisphaerica | exon |
| TCONS_00011163-exon-sc0000122-1575043694:20726..22139 | TCONS_00011163-exon-sc0000122-1575043694:20726..22139 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:19013..22139 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002575 | Aminoglycoside_PTrfase |
| IPR011009 | Kinase-like_dom |
Blast
BLAST of TCONS_00011163 vs. Swiss-Prot (Human)
Match: HYKK (Hydroxylysine kinase OS=Homo sapiens GN=HYKK PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 5.255e-23 Identity = 98/383 (25.59%), Postives = 175/383 (45.69%), Query Frame = 3
Query: 66 RPYVDNEQLKEIVLQCFGLELDGDSEPVEMVSYDDRNFRIKGKLKGQDETKQFVLKIFNSGSASKGVLESVVKLMSHCASKSMGGFAVQTPVPSIKSNGEDAPQFIASYHIPVLGEACYDGCTKEKLINKGLLSVGENNVVTCSHDIRLVTFLEGKVPDYSKENCSDTFAEDTGRTCANLCNAM--LDVPQFKDVDRTGWIWDLLSCGKILKNSCLNVIKDMALKKVLEDVINEFENKTIPELDKHFTKSYIHGDLNEQNLLISN--------EDKVAGILDFDDVVWSYPVIDLATSMMYLSVGCSEKDMIHKLNMMYKGYNSIRKLSEVEKSLLFNICLMRYAQSTSVSIYQHEVIDPTNDYLLLHTKNNFQKMSFLIGLG 1184
+P EQ +V FGL++ S+ + SYDD+NF + K +D ++VLKI N+ ASK ++++ +H M A P S+ C + L+SV + + S+ +RL+T+L G+ ++ S + G+ A L + P+ + R +IW+L + L L + ++++E VI+ F+ + + +L HF + HGDLN+ N+LI + E +V+GILDF D+ + Y V ++A ++MY+ + K I + G+ SI L+ VEK LF + R+ QS ++ Y ++ DYL++ K ++ + + +G
Sbjct: 14 KPTFSEEQASALVESVFGLKV---SKVRPLPSYDDQNFHVYVS-KTKDGPTEYVLKISNT-KASKN--PDLIEVQNHII---MFLKAAGFPTASV--------------------------CHTKGDNTASLVSVDSGSEIK-SYLVRLLTYLPGR--PIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKNVP--LLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLS-HFRECINHGDLNDHNILIESSKSASGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMI--ESKSPIQVGGHVLAGFESITPLTAVEKGALFLLVCSRFCQSLVMAAYSCQLYPENKDYLMVTAKTGWKHLQQMFDMG 352
The following BLAST results are available for this feature:
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