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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011160 ID=TCONS_00011160|Name=TCONS_00011160|organism=Clytia hemisphaerica|type=transcript|length=1161bp
TTGGACCAGTATTAGCAGGAATCTTCATGACCGAATTAGAAAACAGTTTA
GTACCAACGTTAAAAGAACATTTGTCCTTTTGGCGGAGATACGTAGATGA
TACATTGTGTTTTGTCAAAAATGGCTCTTGTGAATTTGTACTGTCTGTCA
TCAATAACTTTCACCAGAACATAAAATTCACatatgaaaacgaaagtaac
aaTATGATATCTTTTCTTGACGTGTTGCTAGTGAAACGAGAATCTTCCAT
TGACACTGCAGTTTTCAGAAAATCTACCAACTCAAATCTGTACATCAATT
GGAACTCTTTTGCAcccgaaatttggaaaaagagTACCTTGAGATGTCTA
GTAAAGCGTGCATATAAAATATGTAACCAAGATTACTTTCTTCAAATGGA
GCTGGATCATCTGGAAACCACCTTTACGCAAATAAACGATTTTCCGGTAG
CAGTAGTCAAACGCATAATGAAAGAAGTCCAGATGgaagaaaaacgaaaa
gaaCAACAACGTGAACAACCTCCCGATGACGTAATTCAACCACCGGAAGA
AATTAAACTCGTTCAGTTGACCCTTCCCTATGCAGGTGAAAAAGGCGAAT
TAATAGCTAAAGAAATCAATCAACACCTCAAAAACATCCAGCCAAACGTG
AAAGCAAGAATTCATTACAAAGCAAAACGACTCAGCAGCGCCTTCAACAT
CAAAGATCGTACATTGAAGAAATATAAACATAACGTTGTTTATGAAGTTG
AATGTAGTGAATGTGACGCGCGATATATTGGAGAAAGTGGTAGACGATTA
GAAGAAAGAACATTAGAACATTCTGGAAAGGATAATAATTCCCACGTTAC
CAAACACACGCAACAATATGGGCATGGTGAAATTACGTTAGACAATGTAA
AAATACTTAATAGTAATTACAAAAACTACTACAAAAGAAAGGTTTCGGAA
GCATTATATATTAGACAAAAGAAACCTGTATTAAATGTGCAAGATATGTC
TGTTCCCTTGAAACTTTTTAACTAATAGCTTTTTAATTATTGTAACATAT
TTTAACACATTTATTgacaattttattacttttattatCCTACAATTACA
AGTAGAATGAGAAGAAAAACGTGCGTTTATTATTGTACGTAATAGCGCAT
TAACATTCTTT Run BLAST on NCBI protein sequence of TCONS_00011160-protein >TCONS_00011160-protein ID=TCONS_00011160-protein|Name=TCONS_00011160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
GPVLAGIFMTELENSLVPTLKEHLSFWRRYVDDTLCFVKNGSCEFVLSVI
NNFHQNIKFTYENESNNMISFLDVLLVKRESSIDTAVFRKSTNSNLYINW
NSFAPEIWKKSTLRCLVKRAYKICNQDYFLQMELDHLETTFTQINDFPVA
VVKRIMKEVQMEEKRKEQQREQPPDDVIQPPEEIKLVQLTLPYAGEKGEL
IAKEINQHLKNIQPNVKARIHYKAKRLSSAFNIKDRTLKKYKHNVVYEVE
CSECDARYIGESGRRLEERTLEHSGKDNNSHVTKHTQQYGHGEITLDNVK
ILNSNYKNYYKRKVSEALYIRQKKPVLNVQDMSVPLKLFN Run BLAST on NCBI transcript from alignment at sc0000121:592022..593182 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011160 ID=TCONS_00011160|Name=TCONS_00011160|organism=Clytia hemisphaerica|type=transcript|length=1161bp|location=Sequence derived from alignment at sc0000121:592022..593182 (Clytia hemisphaerica)
AAAGAATGTTAATGCGCTATTACGTACAATAATAAACGCACGTTTTTCTT
CTCATTCTACTTGTAATTGTAGGataataaaagtaataaaattgtcAATA
AATGTGTTAAAATATGTTACAATAATTAAAAAGCTATTAGTTAAAAAGTT
TCAAGGGAACAGACATATCTTGCACATTTAATACAGGTTTCTTTTGTCTA
ATATATAATGCTTCCGAAACCTTTCTTTTGTAGTAGTTTTTGTAATTACT
ATTAAGTATTTTTACATTGTCTAACGTAATTTCACCATGCCCATATTGTT
GCGTGTGTTTGGTAACGTGGGAATTATTATCCTTTCCAGAATGTTCTAAT
GTTCTTTCTTCTAATCGTCTACCACTTTCTCCAATATATCGCGCGTCACA
TTCACTACATTCAACTTCATAAACAACGTTATGTTTATATTTCTTCAATG
TACGATCTTTGATGTTGAAGGCGCTGCTGAGTCGTTTTGCTTTGTAATGA
ATTCTTGCTTTCACGTTTGGCTGGATGTTTTTGAGGTGTTGATTGATTTC
TTTAGCTATTAATTCGCCTTTTTCACCTGCATAGGGAAGGGTCAACTGAA
CGAGTTTAATTTCTTCCGGTGGTTGAATTACGTCATCGGGAGGTTGTTCA
CGTTGTTGttcttttcgtttttcttcCATCTGGACTTCTTTCATTATGCG
TTTGACTACTGCTACCGGAAAATCGTTTATTTGCGTAAAGGTGGTTTCCA
GATGATCCAGCTCCATTTGAAGAAAGTAATCTTGGTTACATATTTTATAT
GCACGCTTTACTAGACATCTCAAGGTActctttttccaaatttcgggTGC
AAAAGAGTTCCAATTGATGTACAGATTTGAGTTGGTAGATTTTCTGAAAA
CTGCAGTGTCAATGGAAGATTCTCGTTTCACTAGCAACACGTCAAGAAAA
GATATCATAttgttactttcgttttcatatGTGAATTTTATGTTCTGGTG
AAAGTTATTGATGACAGACAGTACAAATTCACAAGAGCCATTTTTGACAA
AACACAATGTATCATCTACGTATCTCCGCCAAAAGGACAAATGTTCTTTT
AACGTTGGTACTAAACTGTTTTCTAATTCGGTCATGAAGATTCCTGCTAA
TACTGGTCCAA Coding sequence (CDS) from alignment at sc0000121:592022..593182 >TCONS_00011160 ID=TCONS_00011160|Name=TCONS_00011160|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at sc0000121:592022..593182 (Clytia hemisphaerica)
TTAGTTAAAAAGTTTCAAGGGAACAGACATATCTTGCACATTTAATACAG
GTTTCTTTTGTCTAATATATAATGCTTCCGAAACCTTTCTTTTGTAGTAG
TTTTTGTAATTACTATTAAGTATTTTTACATTGTCTAACGTAATTTCACC
ATGCCCATATTGTTGCGTGTGTTTGGTAACGTGGGAATTATTATCCTTTC
CAGAATGTTCTAATGTTCTTTCTTCTAATCGTCTACCACTTTCTCCAATA
TATCGCGCGTCACATTCACTACATTCAACTTCATAAACAACGTTATGTTT
ATATTTCTTCAATGTACGATCTTTGATGTTGAAGGCGCTGCTGAGTCGTT
TTGCTTTGTAATGAATTCTTGCTTTCACGTTTGGCTGGATGTTTTTGAGG
TGTTGATTGATTTCTTTAGCTATTAATTCGCCTTTTTCACCTGCATAGGG
AAGGGTCAACTGAACGAGTTTAATTTCTTCCGGTGGTTGAATTACGTCAT
CGGGAGGTTGTTCACGTTGTTGttcttttcgtttttcttcCATCTGGACT
TCTTTCATTATGCGTTTGACTACTGCTACCGGAAAATCGTTTATTTGCGT
AAAGGTGGTTTCCAGATGATCCAGCTCCATTTGAAGAAAGTAATCTTGGT
TACATATTTTATATGCACGCTTTACTAGACATCTCAAGGTActctttttc
caaatttcgggTGCAAAAGAGTTCCAATTGATGTACAGATTTGAGTTGGT
AGATTTTCTGAAAACTGCAGTGTCAATGGAAGATTCTCGTTTCACTAGCA
ACACGTCAAGAAAAGATATCATAttgttactttcgttttcatatGTGAAT
TTTATGTTCTGGTGAAAGTTATTGATGACAGACAGTACAAATTCACAAGA
GCCATTTTTGACAAAACACAATGTATCATCTACGTATCTCCGCCAAAAGG
ACAAATGTTCTTTTAACGTTGGTACTAAACTGTTTTCTAATTCGGTCATG
AAGATTCCTGCTAATACTGGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011160-exon-sc0000121-1491911889:592022..593182 | TCONS_00011160-exon-sc0000121-1491911889:592022..593182 | Clytia hemisphaerica | exon |
| TCONS_00011160-exon-sc0000121-1510915933:592022..593182 | TCONS_00011160-exon-sc0000121-1510915933:592022..593182 | Clytia hemisphaerica | exon |
| TCONS_00011160-exon-sc0000121-1575043694:592022..593182 | TCONS_00011160-exon-sc0000121-1575043694:592022..593182 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:592022..593182 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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