TCONS_00011157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011157
Unique NameTCONS_00011157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011157 ID=TCONS_00011157|Name=TCONS_00011157|organism=Clytia hemisphaerica|type=transcript|length=822bp
tcgCCAAATCGAAGAAAATGCAAATATCTAACGAGGAACGCCGCAATgct
cacttttttataagaaacactttataagaatgttcatgatgaaaatggcc
aaaaattataaataaccatcatagaattttgctactcaagctaagaatgc
cattttaagagaATAACTAAGAAAATAAGACGAAACACTACTGACAAAAA
ATAATAGCCTTATCCCCCCGCTAGGCACCAAGAAGGGATATCGCCAGAGG
TGCAAGGCTAtatgaaagaaaaaaggttttgtttataaaattaGTATAAA
AGTAACACATTATTAAGAATAGATGAAAAAGGTGAGCTATGATTGTTTGA
GATTAAAATAGTTTAAATAGTGCCCCACTGAGAAGCAAGGTTAACTCTTa
attaatctttttttgacACTTGACACAGTCAAgatcaatcaattaatcaa
tcaaatcaatcgaatcaatcaaatcaatcaaatcaatcaaatcaatcaat
caatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatattctg
TTTCAGGTTATTGTAGATAATATTTTATTAACATAATTTTATGAGAACAT
GTGTCTTAGTTATAGCAAAAACCTGAGAACAAACAAAGAGCAATCAAGGC
TTTCTCCTTTCGGCATTGATTTACAGAAATATGTTTTTGTCCAAGATCTT
CCTCGCGTGCCTAAAATTCATGAAGCCTTCTAATgcaaaaatactataaa
aactGAAACATGTTATAGTAAAAAAGAAATCCTTAATAGACACGTACTAA
AATCTAAAAGAAGAAGATCTAT
Run BLAST on NCBI

transcript from alignment at sc0000121:570543..571364

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011157 ID=TCONS_00011157|Name=TCONS_00011157|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at sc0000121:570543..571364 (Clytia hemisphaerica)
ATAGATCTTCTTCTTTTAGATTTTAGTACGTGTCTATTAAGGATTTCTTT
TTTACTATAACATGTTTCagtttttatagtatttttgcATTAGAAGGCTT
CATGAATTTTAGGCACGCGAGGAAGATCTTGGACAAAAACATATTTCTGT
AAATCAATGCCGAAAGGAGAAAGCCTTGATTGCTCTTTGTTTGTTCTCAG
GTTTTTGCTATAACTAAGACACATGTTCTCATAAAATTATGTTAATAAAA
TATTATCTACAATAACCTGAAAcagaatattgattgattgattgattgat
tgattgattgattgattgattgattgattgatttgattgatttgattgat
ttgattgattcgattgatttgattgattaattgattgatcTTGACTGTGT
CAAGTgtcaaaaaaagattaattAAGAGTTAACCTTGCTTCTCAGTGGGG
CACTATTTAAACTATTTTAATCTCAAACAATCATAGCTCACCTTTTTCAT
CTATTCTTAATAATGTGTTACTTTTATACtaattttataaacaaaacctt
ttttctttcataTAGCCTTGCACCTCTGGCGATATCCCTTCTTGGTGCCT
AGCGGGGGGATAAGGCTATTATTTTTTGTCAGTAGTGTTTCGTCTTATTT
TCTTAGTTATtctcttaaaatggcattcttagcttgagtagcaaaattct
atgatggttatttataatttttggccattttcatcatgaacattcttata
aagtgtttcttataaaaaagtgagcATTGCGGCGTTCCTCGTTAGATATT
TGCATTTTCTTCGATTTGGcga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006253XLOC_006253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011157-exon-sc0000121-1491911889:570543..571364TCONS_00011157-exon-sc0000121-1491911889:570543..571364Clytia hemisphaericaexon
TCONS_00011157-exon-sc0000121-1510915933:570543..571364TCONS_00011157-exon-sc0000121-1510915933:570543..571364Clytia hemisphaericaexon
TCONS_00011157-exon-sc0000121-1575043694:570543..571364TCONS_00011157-exon-sc0000121-1575043694:570543..571364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:570543..571364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0582224	0.171875	0.333941	0.257719	0.0780763	0.0621543	0.297877	0.278801	0.196266	0.242304	0	0.0776231	1.16478	0.561787	0.132176	0.177254	0.0434672	0.134097	0.123166	0.19363	0.226146	0	0.0668877	0.0612054	0.124656	0.221843	0.240874	0.51662	0.199551	0.13288
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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