TCONS_00011143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011143
Unique NameTCONS_00011143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length579

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011143 ID=TCONS_00011143|Name=TCONS_00011143|organism=Clytia hemisphaerica|type=transcript|length=579bp
TTTTGCATGGATATTCTTATGTTATACCTTTCTATATGGAAGAGGTGTAC
GAACCCTTTTTATTGCGTAAATTATACGACCGGAAACAACAACAATCCAA
GGCTTTCTTACGGAATCCTCAAATGGTACCAAATCCATGCCCTGAAACAT
TTTGTTCCCCTGGATTTCATAAACTATACACAGAACAAGAAACAAGTGGA
ATTTTAGACTTAACAATTGAATACAAATGTGTGATTTGTCCGGTCAACCA
TTTCAAAACAGATTATGGTGATGGAAGGTGCCTTACATGCAATATCGAAC
CATTCACCATAGATGACGGTAAAAGAACAGCATGCATCGATCGATATACC
AACGTGGATTTTTCTTTCAGTGATCTTCAATTCTATCTGATACTGATATC
aggtgttttttgtttgttgatCAATTCTATGGCGTTTGTGACTTTCATAT
TAAAAAGAGACACCCCTACTGTTCGATCTAGTGATGTCACTATGTCCATA
TTGCATTTGACCAGCATTGCTTTAATCATCATCGCCATCATGTATCTAAA
TTTAAGTGAGAAAGTAACTATGATCAAAT
Run BLAST on NCBI

protein sequence of TCONS_00011143-protein

>TCONS_00011143-protein ID=TCONS_00011143-protein|Name=TCONS_00011143-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
LHGYSYVIPFYMEEVYEPFLLRKLYDRKQQQSKAFLRNPQMVPNPCPETF
CSPGFHKLYTEQETSGILDLTIEYKCVICPVNHFKTDYGDGRCLTCNIEP
FTIDDGKRTACIDRYTNVDFSFSDLQFYLILISGVFCLLINSMAFVTFIL
KRDTPTVRSSDVTMSILHLTSIALIIIAIMYLNLSEKVTMIK
Run BLAST on NCBI

transcript from alignment at sc0000121:80414..80992

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011143 ID=TCONS_00011143|Name=TCONS_00011143|organism=Clytia hemisphaerica|type=transcript|length=579bp|location=Sequence derived from alignment at sc0000121:80414..80992 (Clytia hemisphaerica)
ATTTGATCATAGTTACTTTCTCACTTAAATTTAGATACATGATGGCGATG
ATGATTAAAGCAATGCTGGTCAAATGCAATATGGACATAGTGACATCACT
AGATCGAACAGTAGGGGTGTCTCTTTTTAATATGAAAGTCACAAACGCCA
TAGAATTGatcaacaaacaaaaaacacctGATATCAGTATCAGATAGAAT
TGAAGATCACTGAAAGAAAAATCCACGTTGGTATATCGATCGATGCATGC
TGTTCTTTTACCGTCATCTATGGTGAATGGTTCGATATTGCATGTAAGGC
ACCTTCCATCACCATAATCTGTTTTGAAATGGTTGACCGGACAAATCACA
CATTTGTATTCAATTGTTAAGTCTAAAATTCCACTTGTTTCTTGTTCTGT
GTATAGTTTATGAAATCCAGGGGAACAAAATGTTTCAGGGCATGGATTTG
GTACCATTTGAGGATTCCGTAAGAAAGCCTTGGATTGTTGTTGTTTCCGG
TCGTATAATTTACGCAATAAAAAGGGTTCGTACACCTCTTCCATATAGAA
AGGTATAACATAAGAATATCCATGCAAAA

Coding sequence (CDS) from alignment at sc0000121:80414..80992

>TCONS_00011143 ID=TCONS_00011143|Name=TCONS_00011143|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at sc0000121:80414..80992 (Clytia hemisphaerica)
TTTGATCATAGTTACTTTCTCACTTAAATTTAGATACATGATGGCGATGA
TGATTAAAGCAATGCTGGTCAAATGCAATATGGACATAGTGACATCACTA
GATCGAACAGTAGGGGTGTCTCTTTTTAATATGAAAGTCACAAACGCCAT
AGAATTGatcaacaaacaaaaaacacctGATATCAGTATCAGATAGAATT
GAAGATCACTGAAAGAAAAATCCACGTTGGTATATCGATCGATGCATGCT
GTTCTTTTACCGTCATCTATGGTGAATGGTTCGATATTGCATGTAAGGCA
CCTTCCATCACCATAATCTGTTTTGAAATGGTTGACCGGACAAATCACAC
ATTTGTATTCAATTGTTAAGTCTAAAATTCCACTTGTTTCTTGTTCTGTG
TATAGTTTATGAAATCCAGGGGAACAAAATGTTTCAGGGCATGGATTTGG
TACCATTTGAGGATTCCGTAAGAAAGCCTTGGATTGTTGTTGTTTCCGGT
CGTATAATTTACGCAATAAAAAGGGTTCGTACACCTCTTCCATATAGAAA
GGTATAACATAAGAATATCCATGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006239XLOC_006239Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011143-proteinTCONS_00011143-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011143-exon-sc0000121-1491911889:80414..80992TCONS_00011143-exon-sc0000121-1491911889:80414..80992Clytia hemisphaericaexon
TCONS_00011143-exon-sc0000121-1510915933:80414..80992TCONS_00011143-exon-sc0000121-1510915933:80414..80992Clytia hemisphaericaexon
TCONS_00011143-exon-sc0000121-1575043694:80414..80992TCONS_00011143-exon-sc0000121-1575043694:80414..80992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:80414..80992 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05474	0.187008	1.08567	0.531078	0	0	0	0.11541	0	0	0	0	0	0	0	0.11686	0.791792	1.0329	0.203857	0	2.59582	2.84884	0.219882	0.599713	0.205897	0.0918789	0	0	0.106426	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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