TCONS_00011135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011135
Unique NameTCONS_00011135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011135 ID=TCONS_00011135|Name=TCONS_00011135|organism=Clytia hemisphaerica|type=transcript|length=1179bp
ATTATATCTAACTTTTCgtaatttatataaaaaggaattttgttCATCTA
GTCTTGTACAGCTGATGATTGTATTAACATGAAACTTGAAGTACTGTAAA
GCaaattatgtaatttttttctgaaaattgtatcatgctCCCTCGCCTTG
CNTGCaaattatgtaatttttttctgaaaattgtatTATGCTCACTCGCC
TTGCAGAGCACTCTTGAAGCATCGATTAAACTTGAAAACATATTAGATAG
AATACGAAATTATGAGATCACTTCATCTCTTTTTACTTCAAGACTTTTGA
TGGTTTCAGAATGAATATTTTCGGACTTTCTTTTGTTCTGTGGTTTTTAA
AATTATCGGTTGGTTGCATATTCTAGAGGAAGATGGACGAGGAAAACGTT
TTACTGAATTCGAACTCTGAAAAGCAAGAAGCGCAGGAAACAATTGAAAT
TATTCGAATAAAACATCGTTTTTACGAGATCAACAAACAAACATTGCCCG
CAAAATTATGTTATTTGTTTGACGTGGGGCGAAAAATGATGACCCAAGCT
ATGCTCATCTTATTTGTGGTCCAAACTGGACTTCAGAAAGATGAGGCTGG
TCTGTTAATTGGCTTCAGGAACATCGGATCACTCATCGCCGGGCCGTTCT
GGGGTTGGCTTGCTGATCGTTTCCATAACCACCGAACGCTTCTTGTCATC
ATGGCCATAGGAAGTATTGTAACCATGGGAAGCCAACCACTTCTATCCAT
GCAATTTGGTAACCCTGAAACCAATGTCTGTCCAGCACCTACTGTAGATA
CGTTGTCCAGTATTTTCAAGCCAAATGGGTGTCCACCCGGGTCTGTAAAT
TGTACATCCAATTCTACTATCTTCAATACGACCACTACAGCATCACTAAC
TGGTGTATACCAATACAAGCCATACGgatctttatttttcgtcatgtttt
tcacacaaatagCAGTCATGTTTTTCGAAGCCAGCAGTGAACCGTTTACC
GATTGCGGCGTGTTACGTCGTGCCGAACTGAGCCCGCACCGTAAAATTGA
TTACGGAAGACAACGCTTCTTTGGTGCGTTCGGCGTCATTACTTGCGTTA
CGTTATCTAACGTATTCGCGGATAACTTCCCGAAAGCCAACGTGACATGT
TATACAGCTTTGTTTATCATGTACGTCAT
Run BLAST on NCBI

protein sequence of TCONS_00011135-protein

>TCONS_00011135-protein ID=TCONS_00011135-protein|Name=TCONS_00011135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MDEENVLLNSNSEKQEAQETIEIIRIKHRFYEINKQTLPAKLCYLFDVGR
KMMTQAMLILFVVQTGLQKDEAGLLIGFRNIGSLIAGPFWGWLADRFHNH
RTLLVIMAIGSIVTMGSQPLLSMQFGNPETNVCPAPTVDTLSSIFKPNGC
PPGSVNCTSNSTIFNTTTTASLTGVYQYKPYGSLFFVMFFTQIAVMFFEA
SSEPFTDCGVLRRAELSPHRKIDYGRQRFFGAFGVITCVTLSNVFADNFP
KANVTCYTALFIMYV
Run BLAST on NCBI

transcript from alignment at sc0000121:461445..465732-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011135 ID=TCONS_00011135|Name=TCONS_00011135|organism=Clytia hemisphaerica|type=transcript|length=4288bp|location=Sequence derived from alignment at sc0000121:461445..465732- (Clytia hemisphaerica)
ATTATATCTAACTTTTCGTAATTTATATAAAAAGGAATTTTGTTCATCTA
GTCTTGTACAGCTGATGATTGTATTAACATGAAACTTGAAGTACTGTAAA
GCAAATTATGTAATTTTTTTCTGAAAATTGTATCATGCTCCCTCGCCTTG
CNTGCAAATTATGTAATTTTTTTCTGAAAATTGTATTATGCTCACTCGCC
TTGCAGAGCACTCTTGAAGCATCGATTAAACTTGAAAACATATTAGATAG
AATACGAAATTATGAGATCACTTCATCTCTTTTTACTTCAAGACTTTTGA
TGGTTTCAGAATGAATATTTTCGGACTTTCTTTTGTTCTGTGGTTTTTAA
AATTATCGGTTGGTTGCATATTCTAGAGGAAGATGGACGAGGAAAACGTT
TTACTGAATTCGAACTCTGAAAAGCAAGAAGCGCAGGAAACAATTGAAAT
TATTCGAATAAAACATCGTTTTTACGAGATCAACAAACAAACATTGCCCG
CAAAATTATGTTATTTGTTTGACGTGGGGCGAAAAATGATGACCCAAGCT
ATGCTCATCTTATTTGTGGTCCAAACTGGACTTCAGAAAGATGAGGCTGG
TCTGTTAATTGGCTTCAGGTGTGTAAAAGAAAAATGTTATGTATCAATTA
ATTTGCACACTTTTCATAAGAATATTTGCACACTTTACGAATAATTATGC
CAAAAATATTTAAGAATATCACTACAATGAAATTCGCTAACTGAGGAGGT
TTTGCCCTTTTAAGCGAATTTTTACCTGGAATTGCCAATATTCTTCATCA
CTGTCAAGACTTTCACAAAAACAGCATCATTTTTGCTTTTGCTTTGAATT
TAGGTTTGTTTTGGATCTTAACCTAATAATACTGTTCAGATTATTCAAGC
ATGATTACTATCAAAAAGTTAAGGATATTCTTATAAAAAAGTTTATTGTG
CACTGAGTAGAAGCAACCTTTGAACACATAAAGAATTTTGATTGATTAAA
AAGCGATTAATTTCCCATATTTACAACTGTCAAATATTTTCAAATTTAAC
CTTGAAAATCTATCTTTAAAATATTTTATGGGAATCTAAGACCTTTTTAG
TTCCCTCCTTTCCTGACTTGTTTGAAATACATTGAGGTCTCCGCAACTCG
TGAATGAAATTTTTTCAAGTTATAGAAAATTCGACTTGGTTTGGTTTATA
AAGGTTCCTTATATATTGGCACCAGAAATAACTTGTTTAAGTTAAAAAGA
TATTCGAGTTATACCAAGTTAGAGTTATGGAGATTATAAATATCGGTCAT
ATAAACCAATTGAACAAGGTAAAATATATTAATTAATGGTCATTATTTAA
AATAAGTATATGTAATCACATGATAACGAGTGCAATTCGAGAATAATTGC
ACGAATGATTTTTTTGTTATTAATTTGAAATTAATTAAATTTGAAACAAA
AAAAATCACGAGTGCAATTTTCGAATTGTACGAGTTATTGGGTGATTACG
ATCTAATCGCACAATTTTTTAACTACTTTTTCCCCGTCAGGAAAATAAAT
TACACTGAAAGTTTTACATTTTTCTCTTCTCTTTATGTTTTTCTTTTGTT
GTTTGCTTAAAGATTTTCTTTCTCAAAAAATGAATTTCGAATGCAATTAA
AACGTTCGATAAAAAAATGTAAGAAAAAACTTTAAAATCAATTTTGTAAA
CATTGGCACCTCATTGAAGAGTGTGATTAACGATTAATTGCTCTCTACAG
GATACAATTAACGATTAATTGCTCTCTTTGAAGGGGCNTTTACGGCCAAA
AAATTTTTTCCAGAAAAAACAGCTTGAGTTACATTTAAGAGATAATTGCC
TTTTATCTTTGTCCAAAAAATTTGAAAAAACTAATGAAGCAATTTCACAC
AAAGTCTAAAAAACCCCATTTTTAGGCACATTTTGGCCCAAATTTGCCCC
AAAAAATTATTTTTTGAAAATCGGACTTCATCAGATTCTAAATATTACCA
TATTACACCAAAGTACAAAAAAATCAGAAAAAAATATCGATCCAATCGCC
AGAAACGCTCTTTTTCCCTAAAAATGACATAAGGGAATTTCCCCAAATAA
GAAAAACCGATTTTTACGGCCAAAAAAAAATTTCCGAAAAAAACTGCTTC
AGTCACGTTTTAGAGAACCTTGCCCTTCATCTTTCTGCCAAAAATCAGGA
AAAACTAATGAAGCAATTTTGCACAGTCCACAAAAAACTTATTTTTAGGT
AGTTTTTGGGCCAACTTGCTCCCAAAATTTTTTTTTCAAAAATCGGGTTC
CGTCACTTTTTAGGCATTGCTATTTTGTATCATTGTGCAAAAAATTAAAA
AAAACTAATGAGCCAATCCCGAGAAAAGCTGCTAACAGGAAAATGGTAAA
AGAGAATTTCCCCAGAAAACGAAAATCCGTATTTTACGACGAAAAAAAAT
TTTCCGAGAAAAATTACTTCAGCCACATTTTAGGGTACCTTGCACTCTAT
CTTTCTGCGAAGAATCAGGAAAAACTAATGAAGCAATTTTGCGCAAAGTC
CAAAAAGCCTTATTTTTAGGTAGTTTTTGGCCCAAATTTGCCCCCCAAAT
TTTTTTTTCAAAAATCGGGCTCCGTTACTTTTCAGGCATTGCTATTTTGT
ATCATTGTGCAAAAAATTAAAAAAAACTAATGAGCCAATCCCGAGAAAAG
CTTGTAACAGACGAACGGACAACGGTCAAATTAAAGGACCTCCCGGTAGG
TCCAAAAATAACTCATTGTGCGATTAAGTCTGTAATTGGATGAATTTGTA
AACAGTCATAGACAGCCAGTATGATTTCCTGTTTTTCAATATGAGAAAAA
CGATTAAGAAGTCACCACGTTGAATATGTAATATACAGGTGTACACACTT
TTGATTGCAAACACTTTGTTTAGTGTGTCTTAAATCTAAAAAAGATAAGT
TATGTCGGACGAAAGTGACTTAATAACTGCAGAAGTGAAGTTGATTGGTC
AGAAACTAGGTGACCACGAATATGATATTGGTCAAATGAATATAGTCGAA
CAACGTTCAAAACGACATTGGTATGAAATCAATGGAGATGTTTTAGGAGC
AAAATTTAGTTATTTTTGTGAAGGTGGACGTATAGTGAGTAATGGTGCTA
TGCTAGGATTGTTTTTGACACAAATCGGCCTTACTAAACTTGAAGTAGGC
TTAGTGTTGGGCACAAGGTGAGTGTACAACATGATTTGGGCCACTTTTTT
ATAAGAACAAACTATAGGCAAAAAAAAATTAAAGCATTCTAACAACATTT
TAAGGTTTTGCGGGCTTTACAACATTGCATCAAGGATTTAGAGCATTTCA
AGAACATTTTAAGGCTTAAAACCCAAAATTTAAGTACATTCGAAGGGTTC
AAATTGTTTTCGCCGTTCTTATAAAAAAAATCCTGCATCTATGCAATAAG
GCAAAGATATCTTTGTGTGGCAAAAAGTGACGTAAATTCTTGAGCCATTG
TAGAGCAGTGAGGAAAGTTAGTAGTTCAACAAAACCCAGGAGAAGCGAAT
CATTTAGGTGTCAATAAAGTGCAGATGAACTACTAGGCTACATTACTTCC
GTTTTGTTTTCTGACAAAATGATTGACTGGCTATTTTTAAGTATTACATT
AATATCAGAGGAAAAGAAATAGGCTCTAAACTTTTTCATTTAGTCAAGAA
TATCAACAACTTTCTCTTTTTATTTAGGAACATCGGATCACTCATCGCCG
GGCCGTTCTGGGGTTGGCTTGCTGATCGTTTCCATAACCACCGAACGCTT
CTTGTCATCATGGCCATAGGAAGTATTGTAACCATGGGAAGCCAACCACT
TCTATCCATGCAATTTGGTAACCCTGAAACCAATGTCTGTCCAGCACCTA
CTGTAGATACGTTGTCCAGTATTTTCAAGCCAAATGGGTGTCCACCCGGG
TCTGTAAATTGTACATCCAATTCTACTATCTTCAATACGACCACTACAGC
ATCACTAACTGGTGTATACCAATACAAGCCATACGGATCTTTATTTTTCG
TCATGTTTTTCACACAAATAGCAGTCATGTTTTTCGAAGCCAGCAGTGAA
CCGTTTACCGATTGCGGCGTGTTACGTCGTGCCGAACTGAGCCCGCACCG
TAAAATTGATTACGGAAGACAACGCTTCTTTGGTGCGTTCGGCGTCATTA
CTTGCGTTACGTTATCTAACGTATTCGCGGATAACTTCCCGAAAGCCAAC
GTGACATGTTATACAGCTTTGTTTATCATGTACGTCAT

Coding sequence (CDS) from alignment at sc0000121:461445..465732-

>TCONS_00011135 ID=TCONS_00011135|Name=TCONS_00011135|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at sc0000121:461445..465732- (Clytia hemisphaerica)
GAACATCGGATCACTCATCGCCGGGCCGTTCTGGGGTTGGCTTGCTGATC
GTTTCCATAACCACCGAACGCTTCTTGTCATCATGGCCATAGGAAGTATT
GTAACCATGGGAAGCCAACCACTTCTATCCATGCAATTTGGTAACCCTGA
AACCAATGTCTGTCCAGCACCTACTGTAGATACGTTGTCCAGTATTTTCA
AGCCAAATGGGTGTCCACCCGGGTCTGTAAATTGTACATCCAATTCTACT
ATCTTCAATACGACCACTACAGCATCACTAACTGGTGTATACCAATACAA
GCCATACGGATCTTTATTTTTCGTCATGTTTTTCACACAAATAGCAGTCA
TGTTTTTCGAAGCCAGCAGTGAACCGTTTACCGATTGCGGCGTGTTACGT
CGTGCCGAACTGAGCCCGCACCGTAAAATTGATTACGGAAGACAACGCTT
CTTTGGTGCGTTCGGCGTCATTACTTGCGTTACGTTATCTAACGTATTCG
CGGATAACTTCCCGAAAGCCAACGTGACATGTTATACAGCTTTGTTTATC
ATGTACGTCATGGACGAGGAAAACGTTTTACTGAATTCGAACTCTGAAAA
GCAAGAAGCGCAGGAAACAATTGAAATTATTCGAATAAAACATCGTTTTT
ACGAGATCAACAAACAAACATTGCCCGCAAAATTATGTTATTTGTTTGAC
GTGGGGCGAAAAATGATGACCCAAGCTATGCTCATCTTATTTGTGGTCCA
AACTGGACTTCAGAAAGATGAGGCTGGTCTGTTAATTGGCTTCAGGAACA
TCGGATCACTCATCGCCGGGCCGTTCTGGGGTTGGCTTGCTGATCGTTTC
CATAACCACCGAACGCTTCTTGTCATCATGGCCATAGGAAGTATTGTAAC
CATGGGAAGCCAACCACTTCTATCCATGCAATTTGGTAACCCTGAAACCA
ATGTCTGTCCAGCACCTACTGTAGATACGTTGTCCAGTATTTTCAAGCCA
AATGGGTGTCCACCCGGGTCTGTAAATTGTACATCCAATTCTACTATCTT
CAATACGACCACTACAGCATCACTAACTGGTGTATACCAATACAAGCCAT
ACGGATCTTTATTTTTCGTCATGTTTTTCACACAAATAGCAGTCATGTTT
TTCGAAGCCAGCAGTGAACCGTTTACCGATTGCGGCGTGTTACGTCGTGC
CGAACTGAGCCCGCACCGTAAAATTGATTACGGAAGACAACGCTTCTTTG
GTGCGTTCGGCGTCATTACTTGCGTTACGTTATCTAACGTATTCGCGGAT
AACTTCCCGAAAGCCAACGTGACATGTTATACAGCTTTGTTTATCATGTA
CGTCATGGACGAGGAAAACGTTTTACTGAATTCGAACTCTGAAAAGCAAG
AAGCGCAGGAAACAATTGAAATTATTCGAATAAAACATCGTTTTTACGAG
ATCAACAAACAAACATTGCCCGCAAAATTATGTTATTTGTTTGACGTGGG
GCGAAAAATGATGACCCAAGCTATGCTCATCTTATTTGTGGTCCAAACTG
GACTTCAGAAAGATGAGGCTGGTCTGTTAATTGGCTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006231XLOC_006231Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011135-proteinTCONS_00011135-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011135-exon-sc0000121-1575043694:465115..465732TCONS_00011135-exon-sc0000121-1575043694:465115..465732Clytia hemisphaericaexon
TCONS_00011135-exon-sc0000121-1575043694:461445..462005TCONS_00011135-exon-sc0000121-1575043694:461445..462005Clytia hemisphaericaexon
TCONS_00011135-exon-sc0000121-1510915933:465115..465732TCONS_00011135-exon-sc0000121-1510915933:465115..465732Clytia hemisphaericaexon
TCONS_00011135-exon-sc0000121-1510915933:461445..462005TCONS_00011135-exon-sc0000121-1510915933:461445..462005Clytia hemisphaericaexon
TCONS_00011135-exon-sc0000121-1491911889:465115..465732TCONS_00011135-exon-sc0000121-1491911889:465115..465732Clytia hemisphaericaexon
TCONS_00011135-exon-sc0000121-1491911889:461445..462005TCONS_00011135-exon-sc0000121-1491911889:461445..462005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:461445..465732 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.634764	0.0856087	0	0.287189	7.61566	2.28824	5.03718	1.89596	2.11609	3.2926	2.38679	2.18077	1.59038	1.49097	0	0.370858	0.45728	0.250307	0.870475	0.540556	0	0	1.89105	0.733711	0.847196	0.461041	1.03363	4.39874	1.24817	0.00523501
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024989MFS_assoc_dom
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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