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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011112 ID=TCONS_00011112|Name=TCONS_00011112|organism=Clytia hemisphaerica|type=transcript|length=626bp
aaaagCACACACACAACGCTAACGCACGCATATACACTCCTACTGTACAC
TCAATCACAACCATGATCTGCAATCCCATGGTAGAAGTGGTCACCCTTAC
TTGTTtatttttactaattttcaaacCTACAGatgcCGTAAATATTCAGT
TTATTGGTGCGAGCAAATTGATCACTGTTAAGGTTCTACACAACATCACA
CTAAAATGGCACctttattaacttttttttgaatgACAAGAACACAAGGT
TTGGATTTATTGGTCTCTTGAAGGAATTACTCAGAATTATACTGTATTCA
CAAGAAAGGGTAGTATTCCTTTCTCGTCAAGAGTCCAAGATACCAAGGTA
ACCCTGAATAACGGTGATGGGCAGGGCTGATGGAGATGACGCTGAATAAT
TTAAGATATCAAGATAGTGGAAAATTGATTGCTGAAATATACCATGGAGG
TGTTGAAGCCAAGCTGATCCAGACGAAGGAGGACTTGTTTCATGGGAAAT
TGCACTGATTGTTCTCGCTATCATCTTGCTTGTGATTGTTATTggtgttt
tttaaatatttcctatctatataggaaatatttgttaaaacggtaatttt
tcttctccttcttcttctccttcttc Run BLAST on NCBI transcript from alignment at sc0000121:549236..550588+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011112 ID=TCONS_00011112|Name=TCONS_00011112|organism=Clytia hemisphaerica|type=transcript|length=1353bp|location=Sequence derived from alignment at sc0000121:549236..550588+ (Clytia hemisphaerica)
aaaagCACACACACAACGCTAACGCACGCATATACACTCCTACTGTACAC
TCAATCACAACCATGATCTGCAATCCCATGGTAGAAGTGGTCACCCTTAC
TTGTTtatttttactaattttcaaacCTACAGGTAAGTCCTATGAAAATA
TTCTGTTTATCTGAGATGACACAGCagtatttttcagaaaaaaattattt
taacgaCTAAAAGTGAttaacaaaagtttttttcttctcgACATTATCAT
CTGCCTTGCGTAAGAAGTCTAGTAATATTACGtattaacattttttttaa
gatgcCGTAAATATTCAGTTTATTGGTGCGAGCAAATTGATCACTGTTAA
GGTTCTACACAACATCACACTAAAATGGCACctttattaacttttttttg
aatgACAAGAACACAAGGTTTGGATTTATTGGTCTCTTGAAGGAATTACT
CAGAATTATACTGTATTCACAAGAAAGGGTAGTATTCCTTTCTCGTCAAG
AGTCCAAGATACCAAGGTAACCCTGAATAACGGTGATGGGCAGGGCTGAT
GGAGATGACGCTGAATAATTTAAGATATCAAGATAGTGGAAAATTGATTG
CTGAAATATACCATGGAGGTGTTGAAGCCAAGGTTAGTTTTCTCTTTGAT
CTCACATTTTTATACAATTGTTTCCATAGCTCAAATGTATTTGAATCAAA
CTCTTAACTTGAACAGGAATACTTGCTACTTTCGATATAACTTATCTTGT
CATTGATAGCAGGTTTCCATAAACTTGCATCATAGAGACTACACTGTTTG
AAAATCCGAGACttcattgcaataaaaaattaaaataaagagCTTACCGA
GTGACATGACAAATCTTtaaatataataaatatttttaggtgGAACACAT
GAGTGCGGAGTAAAGTCATTACTAAAAGGGAACTAAAAGGGAAGAAACAT
GCGAGGTTGCGGAGGTCCTTAGAAGGACTGACTATATTTGCAAAAATGGT
TCCTGTAGAgagttttaagatttttattctatttatatattttttaatga
actTTTGAATAAACCACAACAAAAgtattcatttttgaaaatatccctGA
ACCCAAAGTGAAATCTTTGTTCCGTAAAACATAGAGCGTCAACTTTGAAG
CCACGATATTGATCATGATACCgatattttctcttttcagCTGATCCAGA
CGAAGGAGGACTTGTTTCATGGGAAATTGCACTGATTGTTCTCGCTATCA
TCTTGCTTGTGATTGTTATTggtgttttttaaatatttcctatctatata
ggaaatatttgttaaaacggtaatttttcttctccttcttcttctccttc
ttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011112-exon-sc0000121-1491911889:549236..549367 | TCONS_00011112-exon-sc0000121-1491911889:549236..549367 | Clytia hemisphaerica | exon |
| TCONS_00011112-exon-sc0000121-1510915933:549236..549367 | TCONS_00011112-exon-sc0000121-1510915933:549236..549367 | Clytia hemisphaerica | exon |
| TCONS_00011112-exon-sc0000121-1575043694:549236..549367 | TCONS_00011112-exon-sc0000121-1575043694:549236..549367 | Clytia hemisphaerica | exon |
| TCONS_00011112-exon-sc0000121-1491911889:549537..549867 | TCONS_00011112-exon-sc0000121-1491911889:549537..549867 | Clytia hemisphaerica | exon |
| TCONS_00011112-exon-sc0000121-1510915933:549537..549867 | TCONS_00011112-exon-sc0000121-1510915933:549537..549867 | Clytia hemisphaerica | exon |
| TCONS_00011112-exon-sc0000121-1575043694:549537..549867 | TCONS_00011112-exon-sc0000121-1575043694:549537..549867 | Clytia hemisphaerica | exon |
| TCONS_00011112-exon-sc0000121-1491911889:550426..550588 | TCONS_00011112-exon-sc0000121-1491911889:550426..550588 | Clytia hemisphaerica | exon |
| TCONS_00011112-exon-sc0000121-1510915933:550426..550588 | TCONS_00011112-exon-sc0000121-1510915933:550426..550588 | Clytia hemisphaerica | exon |
| TCONS_00011112-exon-sc0000121-1575043694:550426..550588 | TCONS_00011112-exon-sc0000121-1575043694:550426..550588 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:549236..550588 + |
Blast
The following BLAST results are available for this feature:
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