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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011111 ID=TCONS_00011111|Name=TCONS_00011111|organism=Clytia hemisphaerica|type=transcript|length=1893bp
GAAATATCTTGTTATTATAGTTTTGGTCATAATATATGAAAAATGCTGGA
AATGGCTGTCAAGAGCGATTACAATCTACGAAATAGGCGAGCGAAAAGGA
GGTTATGGCCGATCCAGCCCAAAGATCAAGAAGATACGAGGAGAGATATT
CAAAAACAATATAAGAAAACTCAGAAAGAGTTTACTGAAAAGTACAATTT
TGATTTCGAAACCACAAAGCCCCTTGAGGGGAAATACAAATGGGTCCCAG
CTTTGGAGTCACCTATAGCCTCCCCATCGTGTTTAATGATTACAGACAGT
GAAGAAACTTGTTGCTCGTTGAGTCTTTCAGAGAACAATGAACTGCAGTT
CAGTCATGTTCACAACACGAAATCAACAAAGAACAAACCATTACATAAAA
ACCAATCTTGTACAAaaggaaaagttttgaaagtcaaaaataaagtgAAT
AAAAGAAGTGTTAGCACTAAACCACCAGCATCCACCTTCAATAATAGAAA
GCTTCAAAGATCATCTTTCACATATTCTTTACGTAATAAAACATCTACCT
CAGCAAtcCTGGTTAGCTGAGCTTTTGAAGATTGTTGTTCGTTCTGCCTG
CCAATCTCCTATGTTGTGGTACTACTTTTGCACATACAGATAAAGTATCC
TTTTCattccttttttttaattttgtaaaaaagataTCGCTTATGAAAGT
AGTTTTTTGGAATATTATGAATTTCAGATGTGTAGTTGTGTATATAAGAT
GATATTTGCTAGTTAGGGTGAAATTATACAAATTTCTGTTAAAAGCCTGT
CAAATCTAAACTATGCAATGCCTCTTTAGTCCGAATTTTCGAACAGAGCT
GAAGGCAACAGCGGGATGTCAGGGGAAGGGCAACTggtccccccccccca
atgGCTAAGAATTCAGCTCTGTTCGAAAATTCGATTTGACAGGCTTTTAa
cagaaatttgaattttttctaagAAGACAAGAGGTGTCTTTGTTGCTAAT
TTTGGTGCATCTTACCTATTTATAGCTGCTTTTTAGCCTAAAggtaaaaa
tgttaaaagtagATAGATTAAAACATTCAACTCAAACGTTTTGTTGCAAG
TGAAGGAAAACTGAAAAACTGAaattgttgttttattttgatatatcttt
tctgtttttgtttttgtataattATATATTCGTAACTCAAGAAATTGTAT
AGTACACTCCGAATAATAACTTGACAGTCTTAGTAACTTAGACGCTTTTT
TTCTTGGTTCCTTGATAGGGATCTTCTTTTTCTGCATGTCGTGCCTTTTA
GATTTTAAATCTAAAACTTGACCCTATTGCGATCATACTGCATCTATGTA
TTTTTTTCACACTTTTATCACGATTGAGTGGAGCATCAAGCAGTAAGTCC
AAGAACTTAAAATAATTTGCCTAAGTAAGTCTTAAgtaaatactctcggg
tacctaatagccttCTCCCCTGCtatttaatttttcgaaaattttcctcc
CAGGATattcttattccaaaccccgtgcttattaagttttgagatttttt
ccaaaccccctccccctgcttattccaacccccaccCGGCTATTacgtac
ccgagagtattttAATGTCGATAGATTTGACATTTTAACTACAGAAATAC
GCCTTCTCGTGCGCATCGTTTACCCTtagttattttttgttgaaagtcTT
TATATTTTTACTGTAAATATCtataaaatctttatcaaactACCTTTGTA
AATATCCCGCCTTACagatatatctttatttttatctttattaccttttt
gttttgttttatatcGATTTTTTGCGTAGGGATTTGTATTTCGTTGTATG
AAATTTTGATAacgaaattgaacataaaaatgatatttctgac Run BLAST on NCBI protein sequence of TCONS_00011111-protein >TCONS_00011111-protein ID=TCONS_00011111-protein|Name=TCONS_00011111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MLEMAVKSDYNLRNRRAKRRLWPIQPKDQEDTRRDIQKQYKKTQKEFTEK
YNFDFETTKPLEGKYKWVPALESPIASPSCLMITDSEETCCSLSLSENNE
LQFSHVHNTKSTKNKPLHKNQSCTKGKVLKVKNKVNKRSVSTKPPASTFN
NRKLQRSSFTYSLRNKTSTSAILVS Run BLAST on NCBI transcript from alignment at sc0000121:524343..529084+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011111 ID=TCONS_00011111|Name=TCONS_00011111|organism=Clytia hemisphaerica|type=transcript|length=4742bp|location=Sequence derived from alignment at sc0000121:524343..529084+ (Clytia hemisphaerica)
GAAATATCTTGTTATTATAGTTTTGGTCATAATATATGAAAAATGCTGGA
AATGGCTGTCAAGAGCGATTACAATCTACGAAATAGGCGAGCGAAAAGGA
GGTTATGGCCGATCCAGCCCAAAGATCAAGAAGATACGAGGAGAGATATT
CAAAAACAATATAAGAAAACTCAGAAAGAGTTTACTGAAAAGTACAATTT
TGATTTCGAAACCACAAAGCCCCTTGAGGGGAAATACAAATGGGTCCCAG
CTTTGGAGTCACCTATAGCCTCCCCATCGTGTTTAATGATTACAGACAGT
GAAGAAACTTGTTGCTCGTTGAGTCTTTCAGAGAACAATGAACTGCAGTT
CAGTCATGTTCACAACACGAAATCAACAAAGAACAAACCATTACATAAAA
ACCAATCTTGTACAAaaggaaaagttttgaaagtcaaaaataaagtgAAT
AAAAGAAGTGTTAGCACTAAACCACCAGCATCCACCTTCAATAATAGAAA
GCTTCAAAGATCATCTTTCACATATTCTTTACGTAATAAAACATCTACCT
CAGCAAGTAAGTAGGGTGTATTTTGATAGATTGAGATAAacccccggggg
gtactaggtttgcgaggtgacgggtatgtccgagccgaaaatcgaccctt
tgagagacaaaattttggtgattttgggaccctttgagagactttttcct
aaattttggtccattttttccaaattttggtttgattgtcaccaaatttt
cgaaaaatcgttaccctttgagagagaaatttgagagatttttgaggaat
gaaaaaaggtacccttatggctcccacatacccagcacccattttgtcta
agtcccccccccccccggggataaAACAAAACTTTTGCTTAATACAGTAA
AAGTTTAAATTTAGCCACATTGGATTGTTTctcttaaaatttgatgaatt
tgTTGTCAGGCTAGATCAAACGCTATCGGATAATTACGTTTCAATTGTCa
cacaatcgaatctcaatcaaacagcTAATTCTGGGTAAAATTACGCTCAG
TCGGGTTTAACCCCAGCATACTGAGACCACAGAGTATACTAAGACCTCTT
AATATACTATAAGATATTTCACTTGTAATATAGGGTGTAGTGTACTATAT
ACATATAGTGTACTATACCGCCGTGAGATCAGGTaatttgcatcagtgga
ggctaacatgcatagccctcaaatgaatgacctgtctggtcattaaaata
caaagttaaatcaaaacaaaaatggtagagtagagctgcgagtggagctg
cgagtggagctgcgtagttaatttgtttcgaaattttgctgctttgattg
gtcattcatttgatggatatgcaagtttccctccactgatgcaagttacc
caacttcacagTAAGAAGTTGTAGTATGCAAGATTGTAGAGATTGTTGTC
TTAGTATGCTAAGAGTGTGACGATTTTCTCTGTAACAAAGACTTTGTGGA
AGTTAATCTAGAAGTGTATTTAATTCAGAATTACCTCCAATTTTCAATCA
TACACAGGTTCTTTccacaaatgattttaatttttactgCAGTATGAGAT
ACATTAagggggaagaaattttggcaaatttggtaaattgcctaaaaatt
ttgccaaattcagcaaaatttcttcaaatttaatGATGGAATTAGATAAG
GTTGGtttaatgtcgacatccctcttcaaatttttcattgttgAGGGGCC
CTTGAAAGGTTATGTATAATCTTAAGCATTTTTATCTGTTGATTTATCAA
GATTTAGGTGCCCCTCAATCAGATAATTGAGCCCAACTGTCAAACtacaa
aacttttttaatcaaaactaACAGgacaaattctgtgaaaatacTGGAGG
GTCTtgtccattgagtttaaagcccgaagggctagagtagaatctctaac
ctttctcaggcaagaaaaagtgaagccttaaaaaaggcgccgtatttttg
acgacagattgaatctagcaattcctttgtttacggttgatatttttttc
gaaatttagcggtaaattttagtttcaatctgccatttgtgtaaaaacca
ggtgagccgctcaaggccgcacaactttggtaggatttgttggcttcaaa
tcccaccaaggagattcgattctagcccttatACTTATTGgtcttttcta
gaaaaattttggaacaatttcaaagtagaattttttaaaaaatcttctaG
ATCAGATCTTACAGTCTATGGTGTAATGTTACATAAAGTATATTATGCTT
CATAGGTTTTTGAGCCATAATTTATTGTAACTGCCTGTGGTACCcttaaa
aattttccaaatagcAATTATTTTGTTCAACATTACGATACATTGTGCGC
ATGtgcttcttttgtttgaaataatAATGATAACAAAGAAGATAACAGCC
ATGTGCCTAATAAATGGTCTCGATTCTTTTCCAAACCCCTTGTACCTCAA
TAGTCTTTTTGGAGAACATGACAgccttttgaataactaattactccagc
agaaaattcttttcaatgataatgtcatGTTATTGATTTGTCTTTCACAA
CACAACAGTTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNaggggggggggggggggggct
cgtttatttggaacctaagagtacctaAGGACAATATAATTTATCCTGTT
TGTACTGGCTGAGGAAAAGTAATATTTTGGATATTCGCATTCTCCCAAAC
AACAATAGGACCTCACTCTTTATtattaattggaaaatagattgTTTTAG
CTGCGAAAAGAATAACTTTCTCTTTTACTCTAAAATGCCTGATATCAGAC
TGTATATTTACATTTTCTCTTATTTCAGAGGTACATTTTCCAACCCTCCT
GCAATCAGAACTCTCTttattgaatttcaataaaaaattgtgACCCTTCT
CTTATTTCAAATCAAGTTTATTAGACACCTGAAATACTTGACTGAgcaat
aattttattttcaattcctttttttaaacacatttaatttttgtttttat
ttcagtcCTGGTTAGCTGAGCTTTTGAAGATTGTTGTTCGTTCTGCCTGC
CAATCTCCTATGTTGTGGTACTACTTTTGCACATACAGATAAAGTATCCT
TTTCattccttttttttaattttgtaaaaaagataTCGCTTATGAAAGTA
GTTTTTTGGAATATTATGAATTTCAGATGTGTAGTTGTGTATATAAGATG
ATATTTGCTAGTTAGGGTGAAATTATACAAATTTCTGTTAAAAGCCTGTC
AAATCTAAACTATGCAATGCCTCTTTAGTCCGAATTTTCGAACAGAGCTG
AAGGCAACAGCGGGATGTCAGGGGAAGGGCAACTggtcccccccccccaa
tgGCTAAGAATTCAGCTCTGTTCGAAAATTCGATTTGACAGGCTTTTAac
agaaatttgaattttttctaagAAGACAAGAGGTGTCTTTGTTGCTAATT
TTGGTGCATCTTACCTATTTATAGCTGCTTTTTAGCCTAAAggtaaaaat
gttaaaagtagATAGATTAAAACATTCAACTCAAACGTTTTGTTGCAAGT
GAAGGAAAACTGAAAAACTGAaattgttgttttattttgatatatctttt
ctgtttttgtttttgtataattATATATTCGTAACTCAAGAAATTGTATA
GTACACTCCGAATAATAACTTGACAGTCTTAGTAACTTAGACGCTTTTTT
TCTTGGTTCCTTGATAGGGATCTTCTTTTTCTGCATGTCGTGCCTTTTAG
ATTTTAAATCTAAAACTTGACCCTATTGCGATCATACTGCATCTATGTAT
TTTTTTCACACTTTTATCACGATTGAGTGGAGCATCAAGCAGTAAGTCCA
AGAACTTAAAATAATTTGCCTAAGTAAGTCTTAAgtaaatactctcgggt
acctaatagccttCTCCCCTGCtatttaatttttcgaaaattttcctccC
AGGATattcttattccaaaccccgtgcttattaagttttgagattttttc
caaaccccctccccctgcttattccaacccccaccCGGCTATTacgtacc
cgagagtattttAATGTCGATAGATTTGACATTTTAACTACAGAAATACG
CCTTCTCGTGCGCATCGTTTACCCTtagttattttttgttgaaagtcTTT
ATATTTTTACTGTAAATATCtataaaatctttatcaaactACCTTTGTAA
ATATCCCGCCTTACagatatatctttatttttatctttattacctttttg
ttttgttttatatcGATTTTTTGCGTAGGGATTTGTATTTCGTTGTATGA
AATTTTGATAacgaaattgaacataaaaatgatatttctgac Coding sequence (CDS) from alignment at sc0000121:524343..529084+ >TCONS_00011111 ID=TCONS_00011111|Name=TCONS_00011111|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at sc0000121:524343..529084+ (Clytia hemisphaerica)
ATGCTGGAAATGGCTGTCAAGAGCGATTACAATCTACGAAATAGGCGAGC
GAAAAGGAGGTTATGGCCGATCCAGCCCAAAGATCAAGAAGATACGAGGA
GAGATATTCAAAAACAATATAAGAAAACTCAGAAAGAGTTTACTGAAAAG
TACAATTTTGATTTCGAAACCACAAAGCCCCTTGAGGGGAAATACAAATG
GGTCCCAGCTTTGGAGTCACCTATAGCCTCCCCATCGTGTTTAATGATTA
CAGACAGTGAAGAAACTTGTTGCTCGTTGAGTCTTTCAGAGAACAATGAA
CTGCAGTTCAGTCATGTTCACAACACGAAATCAACAAAGAACAAACCATT
ACATAAAAACCAATCTTGTACAAaaggaaaagttttgaaagtcaaaaata
aagtgAATAAAAGAAGTGTTAGCACTAAACCACCAGCATCCACCTTCAAT
AATAGAAAGCTTCAAAGATCATCTTTCACATATTCTTTACGTAATAAAAC
ATCTACCTCAGCAAtcCTGGTTAGCTGAATGCTGGAAATGGCTGTCAAGA
GCGATTACAATCTACGAAATAGGCGAGCGAAAAGGAGGTTATGGCCGATC
CAGCCCAAAGATCAAGAAGATACGAGGAGAGATATTCAAAAACAATATAA
GAAAACTCAGAAAGAGTTTACTGAAAAGTACAATTTTGATTTCGAAACCA
CAAAGCCCCTTGAGGGGAAATACAAATGGGTCCCAGCTTTGGAGTCACCT
ATAGCCTCCCCATCGTGTTTAATGATTACAGACAGTGAAGAAACTTGTTG
CTCGTTGAGTCTTTCAGAGAACAATGAACTGCAGTTCAGTCATGTTCACA
ACACGAAATCAACAAAGAACAAACCATTACATAAAAACCAATCTTGTACA
AaaggaaaagttttgaaagtcaaaaataaagtgAATAAAAGAAGTGTTAG
CACTAAACCACCAGCATCCACCTTCAATAATAGAAAGCTTCAAAGATCAT
CTTTCACATATTCTTTACGTAATAAAACATCTACCTCAGCAAtcCTGGTT
AGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011111-exon-sc0000121-1491911889:524343..524898 | TCONS_00011111-exon-sc0000121-1491911889:524343..524898 | Clytia hemisphaerica | exon |
| TCONS_00011111-exon-sc0000121-1510915933:524343..524898 | TCONS_00011111-exon-sc0000121-1510915933:524343..524898 | Clytia hemisphaerica | exon |
| TCONS_00011111-exon-sc0000121-1575043694:524343..524898 | TCONS_00011111-exon-sc0000121-1575043694:524343..524898 | Clytia hemisphaerica | exon |
| TCONS_00011111-exon-sc0000121-1491911889:527748..529084 | TCONS_00011111-exon-sc0000121-1491911889:527748..529084 | Clytia hemisphaerica | exon |
| TCONS_00011111-exon-sc0000121-1510915933:527748..529084 | TCONS_00011111-exon-sc0000121-1510915933:527748..529084 | Clytia hemisphaerica | exon |
| TCONS_00011111-exon-sc0000121-1575043694:527748..529084 | TCONS_00011111-exon-sc0000121-1575043694:527748..529084 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:524343..529084 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003175 | CDI |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007050 | cell cycle arrest |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007050 |
cell cycle arrest |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0004861 |
cyclin-dependent protein serine/threonine kinase inhibitor activity |
Blast
The following BLAST results are available for this feature:
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