TCONS_00011101 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011101
Unique Name	TCONS_00011101
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	400

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000121:319900..324278+

transcript sequence

>TCONS_00011101 ID=TCONS_00011101|Name=TCONS_00011101|organism=Clytia hemisphaerica|type=transcript|length=400bp
GTGGAAGATGAACTTGACAATGAAAGTGAAGATAATGAAGAAGAACCACA
GGAGAGAAATTTCCAAGCAGAACTGGCATCCAAACTCGGGTTAGGAGGAG
GCATTCCAGCTCCTGGTGGAAAGAAGAAATCGAAGAAACAAGAAGTCGAA
TCTGAAGATGAATGGGATACAGAATCGATCGTATCCAAAGGAACTAAAGC
TGATGATACCAGGAGTATTGCATCTCGGAGATCTACTGTCAGTAAGAAGA
ATAAGAAAAGAGGTACTTCCTCAGCTGCAGAGACAGAGAATATTGCTTCG
ACGGCTGCTTCCTcaaagaaagataaaaagaaaagaagtggATCGTCTAA
GAAAAAGACACAGAAAGACTCTGATGACGATGACTTGTTTGGtccaaaca

Run BLAST on NCBI

transcript from alignment at sc0000121:319900..324278+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011101 ID=TCONS_00011101|Name=TCONS_00011101|organism=Clytia hemisphaerica|type=transcript|length=4379bp|location=Sequence derived from alignment at sc0000121:319900..324278+ (Clytia hemisphaerica)
GTGGAAGATGAACTTGACAATGAAAGTGAAGATAATGAAGAAGAACCACA
GGTAATGTGAGAGGTTTTCTTTTGCTTTGTTTGGTGAAAAGAAGCGTTTG
AAACAGGCTGTGGAAGATGAACTTGATGATGAAAGTGAAGATAATGAAGA
TGAACCACAGGTAATGTGAGaggttttcttttgatttgtttggtGAAAAG
AAGAGTTTGAAATAGGCTGTGGAAGATGAACTTGATGATGAAAGTGAAGA
TAATGAAGATGAACCACAGGTAATGTGAGAGGTTTTCTTTTGCTTTGTTT
GGTGAAAAGAAGCGTTTGAAACAGGCTGTGGAAGATGAACTTGACAATGA
AAGTGAAGATAATGAAGAAGAATCACAGGTAATGTGAGaggttttctttt
gatttgtttggtGAAAAGAAGAGTTTGAAACAGGTTGTGGAAGATGAACT
TGATGATGAAAGTGAAGATAATGAAGANNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTAAAGAAATGAATCTCGTA
GTGCATCcaagaatttttcttctttactgTCCTCAATATGGGGGGTTGTC
CAGTTTTCCCAATTTATTGTTGGTAGATTATATGAGAGGTTTCTTTTGAT
TCGTTTGGTGAAAAGAAGCGTTTGAAACAGGCTGTGGAAGATGAACTTGA
TGATGAAAGTGAAGATAATGAAGAAGAGCCACAGGTCATGTGTGAGGTTT
CCTTTGATTTGTTTGGTGAGAAGAAGCGTTTGAAACAGGCTTTCGAAGAT
AAACTTGATGATGAAAGTGAAGATAATGAAGATGAACCACAGGTAATGTG
AGaggttttcttttgatttgtttggtGAAAAGAAGAGTTTGAAGCAGGCT
TTCGAAGATGAACTTGACGGTGGTAGTATAGGTAATAGGCTGAGAAGAAG
AATTATATTGTTTGTGCTCTTAACAAAGTTAAAAACCTTTAGTaatattt
ttaagtttattACAGGGTAGATACTTGAAGAACACTCCCATGAGTCcata
ttttctttctcataaccGTCTGTATTCATTCCCTTTACCTACAGGAGAGA
AATTTCCAAGCAGAACTGGCATCCAAACTCGGGTTAGGAGGAGGCATTCC
AGCTCCTGGTGGAAAGAAGAAATCGAAGAAACAAGAAGTCGAATCTGAAG
ATGAATGGGATACAGAATCGATCGTATCCAAAGGAACTAAAGCTGATGAT
ACCAGGAGTATTGCATCTCGGAGATCTACTGTCAGTAAGAAGAATAAGAA
AAGAGGTACTTCCTCAGCTGCAGAGACAGAGAATATTGCTTCGACGGCTG
CTTCCTcaaagaaagataaaaagaaaagaagtggATCGTCTAAGAAAAAG
ACACAGAAAGACTCTGATGACGGTATGCGATGGATATacatttcaagttt
ttttgaagttttcctATAATGCATATTATGACACATTCAGATATCCTCAG
TTAAAAGTCGCGTtctgtttttttcactttaaaacaaaatgaCTTTAGCG
TAAAGGTAGAGCAAGGTCGAGGTTCTCGGCTGGATCATACCGAAGACTTC
GTACTTAGTACAAAAAAGTTCTTGATGCCACTCTGCTTAATGCTCAAAAG
AGAAATATCAAGGGTCAGGGAAGCAATCAAGAGAGAAAGAGTTTTGTTCA
TCCTTTCTTCGgatcgcctccgactgcggtcacaGACTCACTGCTTAAAA
CTGATAAAGTCATGGTAATACTCTGATACTTATAACTGACATCCTCTCAA
CTCTTTAGATGACTTGTTTGGtccaaaca

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006216	XLOC_006216	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011101-exon-sc0000121-1491911889:319900..319950	TCONS_00011101-exon-sc0000121-1491911889:319900..319950	Clytia hemisphaerica	exon
TCONS_00011101-exon-sc0000121-1510915933:319900..319950	TCONS_00011101-exon-sc0000121-1510915933:319900..319950	Clytia hemisphaerica	exon
TCONS_00011101-exon-sc0000121-1575043694:319900..319950	TCONS_00011101-exon-sc0000121-1575043694:319900..319950	Clytia hemisphaerica	exon
TCONS_00011101-exon-sc0000121-1491911889:323544..323871	TCONS_00011101-exon-sc0000121-1491911889:323544..323871	Clytia hemisphaerica	exon
TCONS_00011101-exon-sc0000121-1510915933:323544..323871	TCONS_00011101-exon-sc0000121-1510915933:323544..323871	Clytia hemisphaerica	exon
TCONS_00011101-exon-sc0000121-1575043694:323544..323871	TCONS_00011101-exon-sc0000121-1575043694:323544..323871	Clytia hemisphaerica	exon
TCONS_00011101-exon-sc0000121-1491911889:324258..324278	TCONS_00011101-exon-sc0000121-1491911889:324258..324278	Clytia hemisphaerica	exon
TCONS_00011101-exon-sc0000121-1510915933:324258..324278	TCONS_00011101-exon-sc0000121-1510915933:324258..324278	Clytia hemisphaerica	exon
TCONS_00011101-exon-sc0000121-1575043694:324258..324278	TCONS_00011101-exon-sc0000121-1575043694:324258..324278	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000121	supercontig	sc0000121:319900..324278 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	3.18847	1.61825	0.856849	0	0	0	0.901182	0	0	0	0.272812	0	3.545	0	1.47881e-07	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00011101 vs. Swiss-Prot (Human)

BLAST of TCONS_00011101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00011101 (transcript) - C. hemisphaerica