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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011092 ID=TCONS_00011092|Name=TCONS_00011092|organism=Clytia hemisphaerica|type=transcript|length=3369bp
ttgaaattatggTTAGTAAGCATTTGTTTATTATAGAGATGAAATAAGAC
AAGAAAGGCAAAATGATTAACTCAACTGCTAGGTTGGTTTTATTTATTGT
GATATTTTCAGgccaaatttcagcaaagAGCGTCATTGTTTCACAAACGA
ATATAGCAAAAAATGGCCCTAATTGTGGTACAAAGACACAAccatgtcaa
acaatcaaatatGCAATTGATAACATTGCACGAGATGGagatattgtttt
tattgatggAGGCTGTAACAGTTATACATACAACATTGATGAAACAATTA
TCATAGATCAACATATAACAATCACAGCCCTTGAACATGATCAAAAATGT
AATTATCCTTTAATTAAGGGGACAAAGACTATGACGACACTTCCAGGGTT
CATTTTATTTGAAGTACGTTCCAATTTAAACATAAGTTTTATAAGACACA
CGATGGTGCAACCCTCTTATGGTCCATATTCCTACATTTTTTCCCTGAAT
AAAACAAGCAGCAGTATTGTAATTCAAGTTAGTGATTCTGATTTCAGTAA
CGTACTTGGAATAGTAACCTTTGTTACACAAAATAACACTGTTGCATTTG
AAAGATGCAATTTATCTGAAATACAAAATGATCAAGTTAATTTCCAAAAA
GTACCAGGAAATCATGTAATCCTTAATCAAAGTCATCTTCAAGACACTGG
TGATTTTGTTTCACAATTGTTTGTAGGATTCGAGGAAGTGActttttttg
ataccattttcaACGGAGTAAATATATATACAGAAGATCAATATTCAGGC
CACAGTCTAAGTCTGATAAACTGTTATTTGAACAACACCGAGCTCTTTAT
TGACGATGCAAACTCTACTCTTTTCCATAACATTACAATTGGGCAGGATA
GCTTAATATATATTTCCAATGCAGCTTACGTTGATGTATTGGACGTACTG
TTCACCGACAACTATAAGGTGGCTTCATCGCAATATTTTATGAGCTTCGA
TTCTGTTCAAAATGTCAATGTAAATGGGCTCATCTTGATAGATTCTTTGT
CTCAAATCGTTTTCCAATTACGAGGCTCACATCTGAATATGAATGCTAAA
ATCGAACACGCCTTTCATGACTActatcaaaaacttcaaatgcAGCATTT
TTTCGGTGATAATAACGAATATGGCtatataacattttctttggATAGGA
CGAACCCTTTTCATATCACAGATCCTAATGGTCTCATAGGGTCTACCACA
GATGAGTATTTGGTTTCTTGTTCACCAAACTTCAGAGCAGATTTCATTGT
TGACAATGCTGTATCACCTAACCTCTACTCTTCATTATGTGTACCACTTC
CAAGCCAATATTACACTCTTGCGGAATCGAAGGCCTATTTGAATGAAACa
aaccaaaaattttcaacttctccaaatacaaaaattcaaaaatgtccTTT
TGAAGCACAGTGTGGTGATGGTCAAATATCGAACAAAGAACTTTATTGGG
GAATGGTAATTGACAATACCAGTTTCGTTAACACATTTGGAGATTCAGTT
CATGGTTCCTCAATCGCATTCTTTCCTTGTCCGGAATTATATTGTTGTCC
GATAAATGAAAATTGTAATGGTGGATTTGATTCGTGTTGGAGAGGGCGCA
AAGGAACTTTATGTGGTGATTGTAAGGATGGTTTTGTTGTTCCGATTATC
GGTCATGGTTGTATGCCGGAACTTGATTGTGACGTCGTCACTTTCGTTgc
tgttttctttttattaacACCAGTATGGCTATTGATGGTCAAATACGCTT
GTGTATTGATAGAGAAAGTTCTCCAAATCGGGAAACGTCTTCGAGAAGGA
GTTGACAGGGGACGGAGAATTCCTGAACCCGATCGGAATCAGGCTCAGGA
GCATGATGAGCACATCGGATATATTTTGGATGAACCTTGTGGAGATGGAG
GTCGAATGTCACCAATTATCGGTCAACCACCGAATCGTCCAATTAATGAA
AAAGATGACGTTGATATTTTCATTGTATCATTAATGGAGATTGTTTTCGT
GTTTTATCAGGTTGCATACACAATGAGAGTGAAAACTGCTCAAAGAATCA
AACACCAAGAATCATTGATCATTGACATTCTAACCATCCCTTTCACAGGG
AGCATTGATGCAACTCCACCATCCAATCAATATTGCGCTGCATTGACCAG
AGATGCGTTTGCCATTGAAGCATTCAAAATCAGTCCactatttttcagtt
tctgCATTCTTCTTGCAGCAATCGCCTTATTTCAAATGAAAGAATGGATC
GGAAAATTCCGCCGACGGGTGAACAATGGAGAAAGAGAACCATTGTTAAG
ATATCAACAACTTGATCAAAATACACCCAATTATGATGGTAGAAGAAAAC
CTCTCGATCTTCAGTTGAGTGAATGGTATTTGAATTTCATGTTTATTGCA
TATTTACCATTTGCTTTGTTTTTACTGAAGGTTATCAATTGTTGGAGTGG
CTTTACTGATGAAAGTTTGTCATATCTTCAATCATCTGTCTCCTGCTTTT
CTCGACCTTGTCAAGCAATTGCGTTATTCGTTTTCATCTTTATCTGGGTA
CCCGTACCTTTAGCAATGTACTTCGCAACTGAACTTTTAAGAGCTTGTAA
AATTAACACATCACAATTTCTTGTAGCGTTGACATTCCCACCCTCCATTA
TTTGGTATTTTGTGAAACGTGAAAACGGAGAAGGGTTGACTCGTAAACAA
ATCTCATTTATGTatcattttcttcaaatcatTGATGGCGGATATCGAAA
ATGGAAGCCAGAAGAAAACCAACCCATGCAATGGAAACCGGCCCTTATTA
CACGTGCTTTAATTATCGCTGTACTCATCAATATTAATGATCCTTTTGTA
CGATTGACAACCTTTTGTTTGGTTTTCTTCGTATTCACAATATTTGAATC
CACGATGAAACCGTATAAAGACAAAACCTTAAACACATTGAGTATCAATA
GCTGGGTTTTGTTGATGATGTTGGCTATCTTTAACCTCTTTTGGCTTTTC
ACTGGAATAAATGAAATTGAGAAAAGTGATGTTTTGTCGTTTATTGGTTA
TCTCCTATTGGTTTGCGAGATTATCTTGCTTTTACTGCCGTTTTTATCgg
tgatattttatattcttGGATGTCTGGTTTACACGACTGTTCAAAAGTAT
TtaataaaaaagcaaaattgattAGTACCTTTACTTTGTTATAATAAAGT
TTATTTTAACTTTACTGGTTTGGATCTACTTTAAATATAGAATTTAATTA
TTTATCAATAGTCCCCAATTACCAATTCCTTTGACTTTATCTAAGTTCGT
ATCAAAAGTGCATCGAAAC Run BLAST on NCBI transcript from alignment at sc0000121:279894..284278+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011092 ID=TCONS_00011092|Name=TCONS_00011092|organism=Clytia hemisphaerica|type=transcript|length=4385bp|location=Sequence derived from alignment at sc0000121:279894..284278+ (Clytia hemisphaerica)
ttgaaattatggTTAGTAAGCATTTGTTTATTATAGAGATGAAATAAGAC
AAGAAAGGCAAAATGATTAACTCAACTGCTAGGTTGGTTTTATTTATTGT
GATATTTTCAGGTAGGTTTTGATTTCCCAGTACTTATTTTTGGATATTAC
ACATCTATACCTTTCTCATGTTATAAAATGACGCAATTATTAACTTTTTG
CTGAAAATATATTTCTCTTTTTATCTCAGACGTGTTCTTTATCTTTGATA
TTACTTTCNAATGATACAATTAttaactttttgttgaaaatatatttctc
TTTTTATCTTTGATATTACTTTCTGGGGGCCTTTCTTGAGATTTCTAAAC
AATTAAAATACGAGCACATGTAGGAATTGGCGATTTCTGCCCTTGcaaca
taaaaatttgaaaacatttcaaattcagcAAACGGTTTTTCGTTACCAGG
TTTCAGGGCTTTATTTCTGAGAGTATTTCCCATGATTTCTGTTATTTCAG
actttcaaaaagtttagaaatcttGTAAAAATAACAAAGTGATCTACAGG
CATGCTATATTACTTCTGTCTCACTACTTGTcaagcaagctagacgacta
atttagacatgttagaaataaagcaaaaagtaatggaaggaacaatttta
tacaaactaaattccgtaacaataatcgtattatcatataacgcctatac
tactgtattacacgcattataaacgactccagtctatgtaCATATTTCTT
ACATAAAAAAGCCTTCGAATCGTAACTTCTTGAGTTTTAAGCATCAAAAT
GGttttaatttcaccatttcgtGATATATCTTGGTAAGATCTTGTCAAGA
TTTTCTACCAGGGTGTGTACATATTTCTTACATAAAAAAAGCCTTCGAAT
CGTAACTTTTTGAGTTCTAAAAGCCTCAAAATGGTTTTAATTTGCACCAT
TTCGTTGGtatttttattcagttttctaAGAAATTTGGGTGTTTTGAAGT
CTGGGTTTGGAGTCTACAAAGCCTAAAAATTTCTCAACTTGTATTTAATA
Tttaggccatcgaagccttatgttcttatatagtttgttcttataaaaaa
cgtgaatttttgtcattattttttcaggccaaatttcagcaaagAGCGTC
ATTGTTTCACAAACGAATATAGCAAAAAATGGCCCTAATTGTGGTACAAA
GACACAAccatgtcaaacaatcaaatatGCAATTGATAACATTGCACGAG
ATGGagatattgtttttattgatggAGGCTGTAACAGTTATACATACAAC
ATTGATGAAACAATTATCATAGATCAACATATAACAATCACAGCCCTTGA
ACATGATCAAAAATGTAATTATCCTTTAATTAAGGGGACAAAGACTATGA
CGACACTTCCAGGGTTCATTTTATTTGAAGTACGTTCCAATTTAAACATA
AGTTTTATAAGACACACGATGGTGCAACCCTCTTATGGTCCATATTCCTA
CATTTTTTCCCTGAATAAAACAAGCAGCAGTATTGTAATTCAAGTTAGTG
ATTCTGATTTCAGTAACGTACTTGGAATAGTAACCTTTGTTACACAAAAT
AACACTGTTGCATTTGAAAGATGCAATTTATCTGAAATACAAAATGATCA
AGTTAATTTCCAAAAAGTACCAGGAAATCATGTAATCCTTAATCAAAGTC
ATCTTCAAGACACTGGTGATTTTGTTTCACAATTGTTTGTAGGATTCGAG
GAAGTGActttttttgataccattttcaACGGAGTAAATATATATACAGA
AGATCAATATTCAGGCCACAGTCTAAGTCTGATAAACTGTTATTTGAACA
ACACCGAGCTCTTTATTGACGATGCAAACTCTACTCTTTTCCATAACATT
ACAATTGGGCAGGATAGCTTAATATATATTTCCAATGCAGCTTACGTTGA
TGTATTGGACGTACTGTTCACCGACAACTATAAGGTGGCTTCATCGCAAT
ATTTTATGAGCTTCGATTCTGTTCAAAATGTCAATGTAAATGGGCTCATC
TTGATAGATTCTTTGTCTCAAATCGTTTTCCAATTACGAGGCTCACATCT
GAATATGAATGCTAAAATCGAACACGCCTTTCATGACTActatcaaaaac
ttcaaatgcAGCATTTTTTCGGTGATAATAACGAATATGGCtatataaca
ttttctttggATAGGACGAACCCTTTTCATATCACAGATCCTAATGGTCT
CATAGGGTCTACCACAGATGAGTATTTGGTTTCTTGTTCACCAAACTTCA
GAGCAGATTTCATTGTTGACAATGCTGTATCACCTAACCTCTACTCTTCA
TTATGTGTACCACTTCCAAGCCAATATTACACTCTTGCGGAATCGAAGGC
CTATTTGAATGAAACaaaccaaaaattttcaacttctccaaatacaaaaa
ttcaaaaatgtccTTTTGAAGCACAGTGTGGTGATGGTCAAATATCGAAC
AAAGAACTTTATTGGGGAATGGTAATTGACAATACCAGTTTCGTTAACAC
ATTTGGAGATTCAGTTCATGGTTCCTCAATCGCATTCTTTCCTTGTCCGG
AATTATATTGTTGTCCGATAAATGAAAATTGTAATGGTGGATTTGATTCG
TGTTGGAGAGGGCGCAAAGGAACTTTATGTGGTGATTGTAAGGATGGTTT
TGTTGTTCCGATTATCGGTCATGGTTGTATGCCGGAACTTGATTGTGACG
TCGTCACTTTCGTTgctgttttctttttattaacACCAGTATGGCTATTG
ATGGTCAAATACGCTTGTGTATTGATAGAGAAAGTTCTCCAAATCGGGAA
ACGTCTTCGAGAAGGAGTTGACAGGGGACGGAGAATTCCTGAACCCGATC
GGAATCAGGCTCAGGAGCATGATGAGCACATCGGATATATTTTGGATGAA
CCTTGTGGAGATGGAGGTCGAATGTCACCAATTATCGGTCAACCACCGAA
TCGTCCAATTAATGAAAAAGATGACGTTGATATTTTCATTGTATCATTAA
TGGAGATTGTTTTCGTGTTTTATCAGGTTGCATACACAATGAGAGTGAAA
ACTGCTCAAAGAATCAAACACCAAGAATCATTGATCATTGACATTCTAAC
CATCCCTTTCACAGGGAGCATTGATGCAACTCCACCATCCAATCAATATT
GCGCTGCATTGACCAGAGATGCGTTTGCCATTGAAGCATTCAAAATCAGT
CCactatttttcagtttctgCATTCTTCTTGCAGCAATCGCCTTATTTCA
AATGAAAGAATGGATCGGAAAATTCCGCCGACGGGTGAACAATGGAGAAA
GAGAACCATTGTTAAGATATCAACAACTTGATCAAAATACACCCAATTAT
GATGGTAGAAGAAAACCTCTCGATCTTCAGTTGAGTGAATGGTATTTGAA
TTTCATGTTTATTGCATATTTACCATTTGCTTTGTTTTTACTGAAGGTTA
TCAATTGTTGGAGTGGCTTTACTGATGAAAGTTTGTCATATCTTCAATCA
TCTGTCTCCTGCTTTTCTCGACCTTGTCAAGCAATTGCGTTATTCGTTTT
CATCTTTATCTGGGTACCCGTACCTTTAGCAATGTACTTCGCAACTGAAC
TTTTAAGAGCTTGTAAAATTAACACATCACAATTTCTTGTAGCGTTGACA
TTCCCACCCTCCATTATTTGGTATTTTGTGAAACGTGAAAACGGAGAAGG
GTTGACTCGTAAACAAATCTCATTTATGTatcattttcttcaaatcatTG
ATGGCGGATATCGAAAATGGAAGCCAGAAGAAAACCAACCCATGCAATGG
AAACCGGCCCTTATTACACGTGCTTTAATTATCGCTGTACTCATCAATAT
TAATGATCCTTTTGTACGATTGACAACCTTTTGTTTGGTTTTCTTCGTAT
TCACAATATTTGAATCCACGATGAAACCGTATAAAGACAAAACCTTAAAC
ACATTGAGTATCAATAGCTGGGTTTTGTTGATGATGTTGGCTATCTTTAA
CCTCTTTTGGCTTTTCACTGGAATAAATGAAATTGAGAAAAGTGATGTTT
TGTCGTTTATTGGTTATCTCCTATTGGTTTGCGAGATTATCTTGCTTTTA
CTGCCGTTTTTATCggtgatattttatattcttGGATGTCTGGTTTACAC
GACTGTTCAAAAGTATTtaataaaaaagcaaaattgattAGTACCTTTAC
TTTGTTATAATAAAGTTTATTTTAACTTTACTGGTTTGGATCTACTTTAA
ATATAGAATTTAATTATTTATCAATAGTCCCCAATTACCAATTCCTTTGA
CTTTATCTAAGTTCGTATCAAAAGTGCATCGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011092-exon-sc0000121-1491911889:279894..280004 | TCONS_00011092-exon-sc0000121-1491911889:279894..280004 | Clytia hemisphaerica | exon |
| TCONS_00011092-exon-sc0000121-1510915933:279894..280004 | TCONS_00011092-exon-sc0000121-1510915933:279894..280004 | Clytia hemisphaerica | exon |
| TCONS_00011092-exon-sc0000121-1575043694:279894..280004 | TCONS_00011092-exon-sc0000121-1575043694:279894..280004 | Clytia hemisphaerica | exon |
| TCONS_00011092-exon-sc0000121-1491911889:281021..284278 | TCONS_00011092-exon-sc0000121-1491911889:281021..284278 | Clytia hemisphaerica | exon |
| TCONS_00011092-exon-sc0000121-1510915933:281021..284278 | TCONS_00011092-exon-sc0000121-1510915933:281021..284278 | Clytia hemisphaerica | exon |
| TCONS_00011092-exon-sc0000121-1575043694:281021..284278 | TCONS_00011092-exon-sc0000121-1575043694:281021..284278 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:279894..284278 + |
Blast
The following BLAST results are available for this feature:
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