TCONS_00011085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011085
Unique NameTCONS_00011085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011085 ID=TCONS_00011085|Name=TCONS_00011085|organism=Clytia hemisphaerica|type=transcript|length=1192bp
GGAAGTCGATTTTCATTCTCCACGGTCCAGTTAGGATAACTACCTTCCAT
CTTGGTTCGACGCACGCGTACATCAGGGACGTCGTCCGGTGCTTTACCGT
ACGAGAGTCGGTTACCGTTGACGAAATTCTTATACGTCTCAATGGTCTCT
TTATCTTTGCCTTGTCCACTAAACAAGACTTCTGTGTCATTTTTGGCTTC
ATCGCGCATATTCTGGAGTAATATTTTAGCATATGCCATTCTCTCTTTCT
CAGACAATGGATGTTTGCGTCGAGATTGTTGGCGAATATTTCCATTNATA
TTTTAGCATATGTCATTCTCTCTTTCTCAGACAATGGATGCTTGCGTCGA
GATTGTTGGCGAATGTTTCCATTGTTGGAACCATTAGTGCTAGTGCTTGA
GGAGCTGGATGAAGAATCCTTTGAGGAGCCatctttatctgagtcatttt
tgaagtcttttaAGTAAGTGTCTAAGTCAAAGTCTTCACCAGATTGCTGT
TTTTCATTATGTGTAATTAACTTTGCTGTGTCTTTCGACCCTTTGTGAAA
GCGATTTTTAATTTTCCCTAACAGACCTTTTTTACGATCTCCTTTGGTGC
CACGTGCAGCTTTCGGGCGAGGAATTGAGTTGGCCTTTGGCAATTTTGAA
GTGTTATTTTCCTCAAGCGATTTCTTCGTATTAGTATTCCCTTTAAGCAT
TTTGTCAATCTTTGAGACAGTTTTGTTATCATTAGATTGTATGTTAGCTC
CAGTTACTTGTTGTTGTTCAGGTAAGTTGAGAAGACCATGATTTTGTATC
CACTCTCTTACATCTTCACGAAGCTTTGCAATAGGATGTCCAGACCAGTC
ACCAGTTTTTAAACGTTGATTCTCTGTATCTACGCAAAGCTCACGGACTT
TCTCAAGGCGTAGAAAATTAAACGCGATTTCTGTAATTTTAAGAAGGTCT
TGGTCTCTTCCGAACAAATCCCAAAGTGTATCTTTTAATTTAAGGCCATG
TTTCCTTAGGTATGAATCGTAGACTTTAAAGTGATGTGGTGGGAGCTGCC
TTTCCACGTCTTCGTAGAATTTGCGAATTAACTTTTCGTCTCTTTTTGCT
AATTCTTCCTTCTCTTTTTGTTTACGTAGAGTCTCTTGTTCCGCGTTTTG
CCGCGCGTTTTGCGTGGCTGTTGCTTGCGCATGCGCACGCTC
Run BLAST on NCBI

transcript from alignment at sc0000121:178624..179872+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011085 ID=TCONS_00011085|Name=TCONS_00011085|organism=Clytia hemisphaerica|type=transcript|length=1249bp|location=Sequence derived from alignment at sc0000121:178624..179872+ (Clytia hemisphaerica)
GGAAGTCGATTTTCATTCTCCACGGTCCAGTTAGGATAACTACCTTCCAT
CTTGGTTCGACGCACGCGTACATCAGGGACGTCGTCCGGTGCTTTACCGT
ACGAGAGTCGGTTACCGTTGACGAAATTCTTATACGTCTCAATGGTCTCT
TTATCTTTGCCTTGTCCACTAAACAAGACTTCTGTGTCATTTTTGGCTTC
ATCGCGCATATTCTGGAGTAATATTTTAGCATATGCCATTCTCTCTTTCT
CAGACAATGGATGTTTGCGTCGAGATTGTTGGCGAATATTTCCATTNATA
TTTTAGCATATGTCATTCTCTCTTTCTCAGACAATGGATGCTTGCGTCGA
GATTGTTGGCGAATGTTTCCATTGTTGGAACCATTAGTGCTAGTGCTTGA
GGAGCTGGATGAAGAATCCTTTGAGGAGCCatctttatctgagtcatttt
tgaagtcttttaAGTAAGTGTCTAAGTCAAAGTCTTCACCAGATTGCTGT
TTTTCATTATGTGTAATTAACTTTGCTGTGTCTTTCGACCCTTTGTGAAA
GCGATTTTTAATTTTCCCTAACAGACCTTTTTTACGATCTCCTTTGGTGC
CACGTGCAGCTTTCGGGCGAGGAATTGAGTTGGCCTTTGGCAATTTTGAA
GTGTTATTTTCCTCAAGCGATTTCTTCGTATTAGTATTCCCTTTAAGCAT
TTTGTCAATCTTTGAGACAGTTTTGTTATCATTAGATTGTATGTTAGCTC
CAGTTACTTGTTGTTGTTCAGGTAAGTTGAGAAGACCATGATTTTGTATC
CACTCTCTTACATCTTCACGAAGCTTTGCAATAGGATGTCCAGACCAGTC
ACCAGTTTTTAAACGTTGATTCTCTGTATCTACGCAAAGCTCACGGACTT
TCTCAAGGCGTAGAAAATTAAACGCGATTTCTGTAATTTTAAGAAGGTCT
TGGTCTCTACCGAACAAANCAAAATTAAACGCAATTTCTGTAATTTTAAG
AAGGTCTTGGTCTCTTCCGAACAAATCCCAAAGTGTATCTTTTAATTTAA
GGCCATGTTTCCTTAGGTATGAATCGTAGACTTTAAAGTGATGTGGTGGG
AGCTGCCTTTCCACGTCTTCGTAGAATTTGCGAATTAACTTTTCGTCTCT
TTTTGCTAATTCTTCCTTCTCTTTTTGTTTACGTAGAGTCTCTTGTTCCG
CGTTTTGCCGCGCGTTTTGCGTGGCTGTTGCTTGCGCATGCGCACGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006211XLOC_006211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011085-exon-sc0000121-1491911889:178624..179569TCONS_00011085-exon-sc0000121-1491911889:178624..179569Clytia hemisphaericaexon
TCONS_00011085-exon-sc0000121-1510915933:178624..179569TCONS_00011085-exon-sc0000121-1510915933:178624..179569Clytia hemisphaericaexon
TCONS_00011085-exon-sc0000121-1575043694:178624..179569TCONS_00011085-exon-sc0000121-1575043694:178624..179569Clytia hemisphaericaexon
TCONS_00011085-exon-sc0000121-1491911889:179627..179872TCONS_00011085-exon-sc0000121-1491911889:179627..179872Clytia hemisphaericaexon
TCONS_00011085-exon-sc0000121-1510915933:179627..179872TCONS_00011085-exon-sc0000121-1510915933:179627..179872Clytia hemisphaericaexon
TCONS_00011085-exon-sc0000121-1575043694:179627..179872TCONS_00011085-exon-sc0000121-1575043694:179627..179872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:178624..179872 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252639	0.246363	0.245186	0.319836	0	0	0	0	0	0	0	0	0.0720096	0	0.0614815	0.021993	0.189655	0.0833102	0	0	0.0697902	0	0.124145	0	0.154998	0.0691662	0.0494883	0.0528153	0.440644	0.285693
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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