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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011082 ID=TCONS_00011082|Name=TCONS_00011082|organism=Clytia hemisphaerica|type=transcript|length=1976bp
GATACCTTTACTGATCAATACAATCGAATCTTCATGGTGAAAATGACCAT
ATTGTTTTCAGCTTTCATTGGATTCAACTATTTCCAGGATAAAGTGTCGT
GTATTGTGGCCAATGTCAATGGCATGGATGGTGGGTTTGTTGGAAGTGCT
TGCTGGATTCAAGGTTTTTATGTGTTTGACGAGATGAGAGATCGACTTGA
TGAATCTGGATACTATGGTATCCCAAAGAATATGGATTATGATGGCATCA
ATCCTCTTGGTCAGTTATGCTCCACTGTTGATCGTGCCTTGGACAAAGTG
ACCGAATGTCAACCCATGCAAAGGTTGTATTATCTTCAATACCAATACAT
GCCTTTCTTCACTGCATCTTTggctttctttttctatttgcCTTACATTT
TGTTCAAGACGGTCAACTTCGATATCATCAGTTTGCGAGATGAGATTAAA
GATGGTGAAATGTCTGCTGATAAGATCTTCACCAGTTATTTTGACCGTAT
CGTGAACAACCGACGTCGCATGCGATACAAGTCCATCTTGAATATCATAA
TCAAGCTTATGTACTTGATCGCGAACGTCCTCGCATTCGAAGCCTGCGAT
TCAATCCTGCACGGTGACTTCCGTAGCTACGGAACCGAGTTTGCTAAATG
GGTCAAATATGAGAATTTCGAACGCCACGACCATAACCTGAAAGTGCGTG
CTGTTCCAAAACCAGGCAACATTCTGCTTCCACCAATGGGGTTCTGTGAT
ATCCATGAAGCATCGCGTGATGTTCGAAACACGCACATTAACACGCATCG
CTTCATATGTGAGATTTCGCCGCACGTTTTATACCAATATGTTATGTTGG
TTTTCTGGTTTCTCCTGGTGATTGGTATCGTCATCTCCATCCTTGGTTTC
TTCCAACACATTATGGTGCACATTGCAAGCTATATCCAAATGAATCGCCA
TGACCCTACTGGTAAACTCTACCGAGTTTTAACCTTGAGAGAGATTGACT
ACCTTGATATCCTACGATTGAAAAGCACATCTCAATATGGTACAGTCTTG
AAGAAGATCAGAGAGGATCGGTTAGATCATGTCGTTGATGAAACAGAGAA
ACTATACCCAGGCAAAGATACCATGTTTTAAAGCAAGCAGAACATATTTT
AAAGTCCGTCCATTTTCATCTACATAATCGTTGACGATTTTTAATGagat
tcttttttctttccactattgggctgttccattagaAACCGTACAGGGGG
taggacgaaccttttcaagttagaaaaaattattgtaaatattgaaaatg
gcaaaatttgcaaaaatatcctttgaaaaattattttcataccttaaaat
gagggtggacgaactaaaatcccCTGGAAATCTTAGAATAACTTCTTACC
CCCTAGGaaaaataccccctggaaagtttttatggatataaaatggaatg
gcccattttttACGATGAGAATACTAGTACAacaattgtaaaaaaaaaca
gtatcTAGATGAAAGTGGACCGACTATGATTTAAAAGGGCCAGATTTTGA
ACATTCAAGCAAACTGTCCTCGATAAAATTGCAGTGATTGTGCAAACCTT
TAAAGATTTCTAAACTTAACTACTGTAATGCTTCATGTCTTGGGTAGATT
ATATTTTTGTGGACTATGTAAATTCTCTGTGAAAATCAACTCATGTCCCT
TAGATAATATCATACTTAGtgaatttttctcgaaaattgggAACCTAAAT
ACCCTGTGTTGATTAATTTTTGTAATGTATCTAAAATTAAGATTAAAAAt
gccaatttttttcagttatttttcattgcttAGCTTTTTTCATCTACTTT
AATGACCAAAAAGAATCACTGTATGAATTGTAAACATATCTTTTGTAACT
ATCATatctattttttgataatttaccattttttttaCCGTACACTTTTT
GActctttgattaaaaaaaaaacaac Run BLAST on NCBI transcript from alignment at sc0000121:149882..152261+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011082 ID=TCONS_00011082|Name=TCONS_00011082|organism=Clytia hemisphaerica|type=transcript|length=2380bp|location=Sequence derived from alignment at sc0000121:149882..152261+ (Clytia hemisphaerica)
GATACCTTTACTGATCAATACAATCGAATCTTCATGGTGAAAATGACCAT
ATTGTTTTCAGCTTTCATTGGATTCAACTATTTCCAGGATAAAGTGTCGT
GTATTGTGGCCAATGTCAATGGCATGGATGGTGGGTTTGTTGGAAGTGCT
TGCTGGATTCAAGGTATACTGTctttgataagttttgatatgttaACCAA
GCTCTAGGTTCTTTTGCATAAGAATTACTTGTACCGTTTTATTGTTACTC
AATGAGTGGAGTTGGATATTTGGGTAAAATCAGGCTGCtgacatccacta
acggattcgtgctccttatatacTACCCACGTCTTTGTAGAGgtttgcga
ttcagactatggGTAAATGTATTAGATTCTGTGTTATATACCTCTCAAGG
TTTTGATTGGTAGCCACGTGTAAATGAAATGGTCTTAACAACGGTCAATA
TgcgtttattttttattagctTGTGCTAATCTTAAAATTGTCTCTGATTT
ATATAGATTTGGTAAGAATTATTCTAATTCCGAAATAGGTGCCATTTTTG
ACTTTACTACATTTCAGGTTTTTATGTGTTTGACGAGATGAGAGATCGAC
TTGATGAATCTGGATACTATGGTATCCCAAAGAATATGGATTATGATGGC
ATCAATCCTCTTGGTCAGTTATGCTCCACTGTTGATCGTGCCTTGGACAA
AGTGACCGAATGTCAACCCATGCAAAGGTTGTATTATCTTCAATACCAAT
ACATGCCTTTCTTCACTGCATCTTTggctttctttttctatttgcCTTAC
ATTTTGTTCAAGACGGTCAACTTCGATATCATCAGTTTGCGAGATGAGAT
TAAAGATGGTGAAATGTCTGCTGATAAGATCTTCACCAGTTATTTTGACC
GTATCGTGAACAACCGACGTCGCATGCGATACAAGTCCATCTTGAATATC
ATAATCAAGCTTATGTACTTGATCGCGAACGTCCTCGCATTCGAAGCCTG
CGATTCAATCCTGCACGGTGACTTCCGTAGCTACGGAACCGAGTTTGCTA
AATGGGTCAAATATGAGAATTTCGAACGCCACGACCATAACCTGAAAGTG
CGTGCTGTTCCAAAACCAGGCAACATTCTGCTTCCACCAATGGGGTTCTG
TGATATCCATGAAGCATCGCGTGATGTTCGAAACACGCACATTAACACGC
ATCGCTTCATATGTGAGATTTCGCCGCACGTTTTATACCAATATGTTATG
TTGGTTTTCTGGTTTCTCCTGGTGATTGGTATCGTCATCTCCATCCTTGG
TTTCTTCCAACACATTATGGTGCACATTGCAAGCTATATCCAAATGAATC
GCCATGACCCTACTGGTAAACTCTACCGAGTTTTAACCTTGAGAGAGATT
GACTACCTTGATATCCTACGATTGAAAAGCACATCTCAATATGGTACAGT
CTTGAAGAAGATCAGAGAGGATCGGTTAGATCATGTCGTTGATGAAACAG
AGAAACTATACCCAGGCAAAGATACCATGTTTTAAAGCAAGCAGAACATA
TTTTAAAGTCCGTCCATTTTCATCTACATAATCGTTGACGATTTTTAATG
agattcttttttctttccactattgggctgttccattagaAACCGTACAG
GGGGtaggacgaaccttttcaagttagaaaaaattattgtaaatattgaa
aatggcaaaatttgcaaaaatatcctttgaaaaattattttcatacctta
aaatgagggtggacgaactaaaatcccCTGGAAATCTTAGAATAACTTCT
TACCCCCTAGGaaaaataccccctggaaagtttttatggatataaaatgg
aatggcccattttttACGATGAGAATACTAGTACAacaattgtaaaaaaa
aacagtatcTAGATGAAAGTGGACCGACTATGATTTAAAAGGGCCAGATT
TTGAACATTCAAGCAAACTGTCCTCGATAAAATTGCAGTGATTGTGCAAA
CCTTTAAAGATTTCTAAACTTAACTACTGTAATGCTTCATGTCTTGGGTA
GATTATATTTTTGTGGACTATGTAAATTCTCTGTGAAAATCAACTCATGT
CCCTTAGATAATATCATACTTAGtgaatttttctcgaaaattgggAACCT
AAATACCCTGTGTTGATTAATTTTTGTAATGTATCTAAAATTAAGATTAA
AAAtgccaatttttttcagttatttttcattgcttAGCTTTTTTCATCTA
CTTTAATGACCAAAAAGAATCACTGTATGAATTGTAAACATATCTTTTGT
AACTATCATatctattttttgataatttaccattttttttaCCGTACACT
TTTTGActctttgattaaaaaaaaaacaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011082-exon-sc0000121-1491911889:149882..150044 | TCONS_00011082-exon-sc0000121-1491911889:149882..150044 | Clytia hemisphaerica | exon |
| TCONS_00011082-exon-sc0000121-1510915933:149882..150044 | TCONS_00011082-exon-sc0000121-1510915933:149882..150044 | Clytia hemisphaerica | exon |
| TCONS_00011082-exon-sc0000121-1575043694:149882..150044 | TCONS_00011082-exon-sc0000121-1575043694:149882..150044 | Clytia hemisphaerica | exon |
| TCONS_00011082-exon-sc0000121-1491911889:150449..152261 | TCONS_00011082-exon-sc0000121-1491911889:150449..152261 | Clytia hemisphaerica | exon |
| TCONS_00011082-exon-sc0000121-1510915933:150449..152261 | TCONS_00011082-exon-sc0000121-1510915933:150449..152261 | Clytia hemisphaerica | exon |
| TCONS_00011082-exon-sc0000121-1575043694:150449..152261 | TCONS_00011082-exon-sc0000121-1575043694:150449..152261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:149882..152261 + |
Blast
The following BLAST results are available for this feature:
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