TCONS_00011078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011078
Unique NameTCONS_00011078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2040

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011078 ID=TCONS_00011078|Name=TCONS_00011078|organism=Clytia hemisphaerica|type=transcript|length=2040bp
TCAACTTTTAACACAAATTGTATCAAAAAATTAAGCTACTTTTGCGCCAT
AATTTTTAAGACGTAAAGctaaaaagaacttttttgataAGCTTTTCAGA
CCCCCTTCTAAACTCCTTTTCTCAATTAGAGAAAAACGAATCTGTGAATT
TTTTGACGCGGTGACAAGTAAGCATATTTTCTAGATATTTCTTTATTGTc
atcaatgataaattttatGGTGTGACAAAAAAACTTGAATGGCGAAGAGA
CCACCATTATGATAATAAAATAGTGCGTCGACAAAAACACGAAATCACAA
ctgaacaacaacaaaaaattttggactaaaaatttataacagacATCCGG
GGAAAATCTAAAGCATCAGTAACACAATATCAAaccaaatccaaaaagaa
acCAACCAACAAACACATAACCATTTGCTAGTAGAAACCACTCCATCTCT
TACGAAGGCCAAATCATGGCAATGTTAGCAGCAAGTATCCAAgaactggt
ttccatcaagatcAAGCCAAGACATGATGGAATCACTGATCAATACAATC
GTATTTTCATGGTCAAGATATGTTTGATTTGCGCTGCTATCATTGGTGTG
AATTACTTCAGTGATAAAGTATCGTGTATTGTGGCAAATGGGAATGGTAT
GGATGGTGCGTTTGTTGGAAGTGCTTGCTGGATTCAAgGATTCTACATTT
TCGAGGAAATGAAGACTCGATTGGATCAATCAGGGTATTACGGTATCCCA
CGCAACATGGATTATGACGGCATCAATCCTCTCGGTCAACTTTGCACCAC
AAGTGATCGTGCATTGGACCCTGTAGAGCAATGTACTCCCATGGAGAAAG
TGTTCTATCTTCAATACCAGTATATGCCATTCTTCGTTGCATCACTGGCT
TTATTGTTTTACGTGCCTTATTTGGCGTTCACTTTCACCAACGCAGATCT
GGTGTTGCTCAAGGATTACCTCAAGGCTGGAAGTGTAGATTCAGATGATT
TGTTGAAGAAATTCTTTGATCAGAAAAAGAATCGACGTAAAAAGATGAGA
TATCGTGTGTTCTCATTGTTGCTGGTCAAACTGATGTATCTGCTGGTCAA
CGTTGTGGCGCTGTTAGCTTGCCACGTCCTGCTTCATCACAAATTTCTGA
CCTATGGTCGTGATTATCTGCAATGGACGGACTTGGATCACAATTTGGCA
CACGAGCACAATTTGAGAGAACGTCATAGTCCTAAACCAGGAAATGCGTT
ACTTCCTCCCATGGGCCTTTGCGAGATCCATGAAGCATCGCGCGACGTAC
GCAACACACATGTCAATCAACATAAGTTCATTTGTGAAGTCTCGCCCCAC
GTGTTGTATCAATACGTCTTATTGGTCCTTTGGTTCGGCCTTGTAATCGG
CATCGTAGTCTCAGTCATCGGTGTCCTAATGAATCTCTTTGGACATCTCC
TCAATTTTGCCTGCTTCATGAGCTCATCCGACCCTGCACGCCGTATGTAC
CGCGCGATCACGTTGAGAGAGATTGATTATCTGGAGTATATACGCCGTAA
CAACATGCCGATCTACGTGGAGCTTCTACGTAAGATCAGAGATGCCAGAT
CTATCACTTTTAAAGGCAAAGAGAAATACGGATACACCGGTGTTGAACTT
TAAATGATGAAAAACTTTCTTGGATTTTCGTCTTGTCTCATGTCAATCTT
TCAATGATATGTGGACACCCTCTTAAAAGAATTCCGTGAACTTCCTGTAT
AGACCAAAAGCTAACTAAGTTAATTTTTGGTTATAATTTGGAGATTACCT
CCATGGTTCGTCCAATCCTGTGATTAATCTTATGATTTCAATTTGTTTGG
CTGATTGTACAGCTTTGGTAATTCTTTACTAAGTCAATAGCCTCGTGAAA
TTAATTTGTTTTGCTATCGACTACAGTACCTAAAAAGAATTTATCCTCAA
ATACCATTTTTCACATCCCAAAGACTATCATAAGAACTTTTTTCAGATGT
AACGTATTTcagtttttatgaaaaaaaaagtcaaaattct
Run BLAST on NCBI

transcript from alignment at sc0000121:136480..141121+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011078 ID=TCONS_00011078|Name=TCONS_00011078|organism=Clytia hemisphaerica|type=transcript|length=4642bp|location=Sequence derived from alignment at sc0000121:136480..141121+ (Clytia hemisphaerica)
TCAACTTTTAACACAAATTGTATCAAAAAATTAAGCTACTTTTGCGCCAT
AATTTTTAAGACGTAAAGctaaaaagaacttttttgataAGCTTTTCAGA
CCCCCTTCTAAACTCCTTTTCTCAATTAGAGAAAAACGAATCTGTGAATT
TTTTGACGCGGTGACAAGTAAGCATATTTTCTAGATATTTCTTTATTGTc
atcaatgataaattttatGGTGTGACAAAAAAACTTGAATGGCGAAGAGA
CCACCATTATGATAATAAAATAGTGCGTCGACAAAAACACGAAATCACAA
ctgaacaacaacaaaaaattttggactaaaaatttataacaggtaattat
ttttcttatcgaTTCCCAATATTgctttttctttgaattaagtttatttt
atttattttttgtgataGTTTAAAAGTTTGCGAATATTTTACTACCTCTC
CTTATTATATTGAATAACAATCAGATCTTTCAGTCAAAGTTTTCCATGCA
GAAATATTTAGTCGCTCTTTAAGGGGAATCTTTCCAGATAATAAAACCGC
AgtatataatttttcttttgtttacttcgGAATGATGCCCAAATTTGATA
AAGGGGTGTAATTTTGAACCCAAAGAAAGAGATCCTGGGTGATCTAAATC
ATAAAAGAATTTGCTGGAGAGTCTCTTTGAAATTGCTGTAGCTTGGTGTA
ACTGTAGTTTTAGATCTTTTTTTCGGTAgccttttttgtttataatgGAG
CCTGTCAGCGgtgaaagttttttgaagtcGTTGTATTGTCGGTAgttcgg
tttttttttaaagtgacgTCGCAAAAAGTGAAGATGTTTTCTGTTGATCA
TTTTTCAAGAGTTTGTTTGAAAGAAGGTCGTTATAACAAGCagtgttttg
tttttgctgtTGAAATTGATCGAGAGTCATCTTATGTTGTCAGTAAGTAT
AATGATATATGTCTTTTGCTTCGTTGCTTCACAAATGCTGGATTGCCAGA
TATTTAAAAATGTGTCACGTAAAAACCAAGAGAGTGCTagatttaaagtc
tattcacgataagtgtgcactcttttttcatttacctataacttttgaag
gaattcttcaatttttataaatttggtatcattggaaagatgttagtgag
tggaacaatttgaaattaaaaaatctttaaaaaaattataaaaatgaaga
tgaaaataaaNNNNNNNNNNNNNNNNNNNNNNNNNNctccttgattatcg
aacattatcactgtgaaaaaatttctcaaaaataatcattcagtcaaaag
atatcaagcaaagttataagctgattgacgtctaaaagcggtgttttctg
ctgttttttgctgttttttggggtcaatcacttatcaactttgtatcata
actttttaatgaatatatattttagtaaaactttttcacagtgatgatct
cctaagaccaaagaatctctccagtgaaaatgaaagttatagcacttttc
tacaagatcttcatttttttcttcttcattttcatgttcatttttagaat
tctttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctccaacgataccaaatt
tataaagattgaagaattccttcaaaagttataggtgaaagaaaaaagag
tgcacacttatcgtgaacagactttaatcaTTCATCTGAAATGTGGCGCA
AATTTTAAGGCGCAAATTTTTCTTGCGTGACAAAGGTTATGGATAGATTC
CTCTCTAGTCTTCAGCTAACgataaaaaatcattattttcattGGCTACT
TTGGGCCATGATATTTACAAAATCTAACATATATTTAACATGATGACGTA
CCTTAAATGGGTTAAATTTTGGTGtggattaaatttggcaaataataaaa
tatactgaaaaattcgcaaaattaaatccccgccaaattaaacaaaaaga
atattacGTAAAAAATAACAACTTTTCAGTATATTTTATAGTAAATTTTA
CCCATTTAAGTGTCTCAAAATTTGcatttcgccaaattaaatccccgtca
aaaatcgtattttggccaatcgctaaattaaatccacgccaaaatttatc
cacttaagtaAGGTATTCaatcaagaaaaaatgaatTCTTAGGCTTAACA
CCATTTTCGGACTGCTTTAAGGATGGCGAACCGAATCTACCGCTTTTTGT
TTTCACAATGcatattattttgaaatctaacgatggtttttatttcaatc
gggcgttttagatgggaaataagttaGTTAGTTTCAAACTATTGCCCCCT
TTTCGAgcctttaaactcaatggtagaTAATGTTAACtataacattaaaa
taaaacgaTGTTggtatttcattttttagacATCCGGGGAAAATCTAAAG
CATCAGTAACACAATATCAAaccaaatccaaaaagaaacCAACCAACAAA
CACATAACCATTTGCTAGTAGAAACCACTCCATCTCTTACGAAGGCCAAA
TCATGGCAATGTTAGCAGCAAGTATCCAAgaactggtttccatcaagatc
AAGCCAAGACATGATGGAATCACTGATCAATACAATCGTATTTTCATGGT
CAAGATATGTTTGATTTGCGCTGCTATCATTGGTGTGAATTACTTCAGTG
ATAAAGTATCGTGTATTGTGGCAAATGGGAATGGTATGGATGGTGCGTTT
GTTGGAAGTGCTTGCTGGATTCAAggtacacgtctttttttataagtaag
AGTGTCTATCCCTTAATCAAGCTTGCATTATCCTCAGCATTATATTGCTC
TTAAACAATAGAgtcattgtttaggtaccaaaaactgagccagcatatgc
ttataaacagTAGATGAAAAAACATGTCCACGTTGTTTTATACAAGAACA
AATTACATCGAGACAAAAAGTTTCGAGgttaagaaatttaaaattgtaAG
AGCATCtaaaggctttatggactctaaaatttgataaaaatagtcacaaa
attttgagaattagAAAACTTTCTAAGAATTTGGAGgttccaaaacaaaa
aatttgcaCATAATCCATTGCACCAAATATGTTCATTTATCATCTAAATT
TCCACATCAACTATTTATAAATTCCCTTCATTTTATTTAGGATTCTACAT
TTTCGAGGAAATGAAGACTCGATTGGATCAATCAGGGTATTACGGTATCC
CACGCAACATGGATTATGACGGCATCAATCCTCTCGGTCAACTTTGCACC
ACAAGTGATCGTGCATTGGACCCTGTAGAGCAATGTACTCCCATGGAGAA
AGTGTTCTATCTTCAATACCAGTATATGCCATTCTTCGTTGCATCACTGG
CTTTATTGTTTTACGTGCCTTATTTGGCGTTCACTTTCACCAACGCAGAT
CTGGTGTTGCTCAAGGATTACCTCAAGGCTGGAAGTGTAGATTCAGATGA
TTTGTTGAAGAAATTCTTTGATCAGAAAAAGAATCGACGTAAAAAGATGA
GATATCGTGTGTTCTCATTGTTGCTGGTCAAACTGATGTATCTGCTGGTC
AACGTTGTGGCGCTGTTAGCTTGCCACGTCCTGCTTCATCACAAATTTCT
GACCTATGGTCGTGATTATCTGCAATGGACGGACTTGGATCACAATTTGG
CACACGAGCACAATTTGAGAGAACGTCATAGTCCTAAACCAGGAAATGCG
TTACTTCCTCCCATGGGCCTTTGCGAGATCCATGAAGCATCGCGCGACGT
ACGCAACACACATGTCAATCAACATAAGTTCATTTGTGAAGTCTCGCCCC
ACGTGTTGTATCAATACGTCTTATTGGTCCTTTGGTTCGGCCTTGTAATC
GGCATCGTAGTCTCAGTCATCGGTGTCCTAATGAATCTCTTTGGACATCT
CCTCAATTTTGCCTGCTTCATGAGCTCATCCGACCCTGCACGCCGTATGT
ACCGCGCGATCACGTTGAGAGAGATTGATTATCTGGAGTATATACGCCGT
AACAACATGCCGATCTACGTGGAGCTTCTACGTAAGATCAGAGATGCCAG
ATCTATCACTTTTAAAGGCAAAGAGAAATACGGATACACCGGTGTTGAAC
TTTAAATGATGAAAAACTTTCTTGGATTTTCGTCTTGTCTCATGTCAATC
TTTCAATGATATGTGGACACCCTCTTAAAAGAATTCCGTGAACTTCCTGT
ATAGACCAAAAGCTAACTAAGTTAATTTTTGGTTATAATTTGGAGATTAC
CTCCATGGTTCGTCCAATCCTGTGATTAATCTTATGATTTCAATTTGTTT
GGCTGATTGTACAGCTTTGGTAATTCTTTACTAAGTCAATAGCCTCGTGA
AATTAATTTGTTTTGCTATCGACTACAGTACCTAAAAAGAATTTATCCTC
AAATACCATTTTTCACATCCCAAAGACTATCATAAGAACTTTTTTCAGAT
GTAACGTATTTcagtttttatgaaaaaaaaagtcaaaattct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006209XLOC_006209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011078-exon-sc0000121-1491911889:136480..136821TCONS_00011078-exon-sc0000121-1491911889:136480..136821Clytia hemisphaericaexon
TCONS_00011078-exon-sc0000121-1510915933:136480..136821TCONS_00011078-exon-sc0000121-1510915933:136480..136821Clytia hemisphaericaexon
TCONS_00011078-exon-sc0000121-1575043694:136480..136821TCONS_00011078-exon-sc0000121-1575043694:136480..136821Clytia hemisphaericaexon
TCONS_00011078-exon-sc0000121-1491911889:139009..139354TCONS_00011078-exon-sc0000121-1491911889:139009..139354Clytia hemisphaericaexon
TCONS_00011078-exon-sc0000121-1510915933:139009..139354TCONS_00011078-exon-sc0000121-1510915933:139009..139354Clytia hemisphaericaexon
TCONS_00011078-exon-sc0000121-1575043694:139009..139354TCONS_00011078-exon-sc0000121-1575043694:139009..139354Clytia hemisphaericaexon
TCONS_00011078-exon-sc0000121-1491911889:139770..141121TCONS_00011078-exon-sc0000121-1491911889:139770..141121Clytia hemisphaericaexon
TCONS_00011078-exon-sc0000121-1510915933:139770..141121TCONS_00011078-exon-sc0000121-1510915933:139770..141121Clytia hemisphaericaexon
TCONS_00011078-exon-sc0000121-1575043694:139770..141121TCONS_00011078-exon-sc0000121-1575043694:139770..141121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:136480..141121 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.251072	0.677755	0.43516	0	0.953627	0.353311	0.826011	1.22875	0.918205	1.42336	1.3655	1.32526	0.280101	0.00498537	0.141342	0	65.5427	58.4063	0.432543	0.581946	92.2938	94.5723	32.4412	36.0124	53.5873	57.7984	0.232813	0.128112	0.21506	0.056058
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top