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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011065 ID=TCONS_00011065|Name=TCONS_00011065|organism=Clytia hemisphaerica|type=transcript|length=2444bp
TTGTAAAGCTTTCTTCTCCGTAAAATTCAAAAAGGggaatataaaataaa
tatttctttttctctccTAAGCgtactaaaatgaaaaatagttaCAAACT
TTGtataaaaatctttataaacttcaaaaaaatctaaatctgaaaaattc
caaaatatgTATTCTAAAAATAANTAGgtccaaaaactgaaaaagagtTC
TTTCAGAAAGAAACTTTAAGAAGCTGTTATTATGGGTAGTTAATCAATGG
AAAGGTCATTTTAATTTCTTCTGCAAAAGTGTGCACCGGAATAACCTGAT
TTTGAAAAGACAGATTCACATCAACGTTCTAAAAGTCTCAAAAAGGTCTA
CCTAAATTTCGTAATTCTTATTTGTTATCGTTATTAttctttctataaat
tttaacATTGCTAACAGGACGCCTTATCCTCAAGGCAGGTAAAATTTCTT
CCTCAGTCTCCACATTACGATGAAAACCAGACAAACACAGCGAGTCTGGA
TGAAAACTTAGTGGAAGCATTCCAACAGTTCCACAAAATCGATTCTTGGT
AATTTGCATTGAAAGTTGATCTGATGTTTGGAGGATCAACACATTATCAG
CTTCCTGGCTAGCTTTTGCTGACCCGTAGATAGAAGCTGTTTGCAGGGAT
CCACCATCATTTTCTTTACGTGGATGGACCACTACAGTTATGTGGATATT
AAGATCAGATGCACAGCGTCGAAAAGCTGCAATAGAACGGTCCATCACTT
GAAAGCGGTCATCTGAACTTGAATATGACGTAGAAGTCATGAATTGAAGG
TTATCAACGATAACATGCTCAATGTCATGCATATAAACTGAATACTCTAT
TGTATTTATTACATCTTGTAGATCTTGAGCACCATAATACGACATAAAAT
ATAGTGGTAGACTCTCAAAGTTTTCACTCCATTTCATAAATTTATCCATG
TGTTTCTCAACAGCAAAGCCAGCAAATTGATGCATCAATGTGTTTAATAA
TCGCACATTTCTAATCTCAAAGCTACCCCACAACGTTTTAACGCCTTGTA
AACATAAATCTAATGAAAGTTCACTCAAGAACGTTGTTTTACCAGAACCA
GTAGCCCCAGTAAAAACAGTCAATTCTCCTCTACGATGTCCTTTCAAATA
TTCATTTAAAGCTGGGAACCTAGTAAAGGGAACCCCAGCATTCATTTTAG
CATTCATCAATTCATTAAATAAGTCAGAGCGCAAATCCTTAAAGGTAAGT
ATCCGATCATGTGACATGTGCTTTGAAGTGGATATTGAATCTGAAATTTC
ACTTGACTGTTGTTTTTCAAGAAGACTAAATGGTGAATCATTACATTGAA
CTTTCCAACATCGTTTCAAATCtaatttcctggaaaaattttgcAAGCTT
TCTTGTTCACGATATGTGCTAGGAAACCAAAGTACAATTTTATTGAATTG
TTCTAAAAAAGGGAAAAGGTCTGGATGGAGTGATATTTCTGTACTTGAGA
TTGACAATGATGGTAAACCAGTGACATGAAAAACACTCATCGCATCCAAC
TCTGTAGTTGTTAATATTAAAGTTTTATCTGCAGGGGAAATCGTATTCCA
ACCAAATAAAGATTCATGGCTTGTGTTCATGATTTCAATAATCCTCTTTT
CGTTGCCATGTGAAACACACTTGACAACCTTCGACTTACTAACATCATAA
TAAGGGTAAACAATTGTATTGTCAGGTGCTAGACGTATATCAAAATGacg
aaaagtttcaaaatatattgggCTTTCTGGAGCATTGATCTCACTGACAT
CAACAGATGACTCCCATAAAGAATTTTCACCGCCTACTCTAATAAATGTT
TCTAAGGTTCCTTTAATACCATCTTGAGACTGTCGTCCTTCTGTCTTTTC
TTTAAGAAATTCTTCCCAACTTTGCTTGACACCACAGCTTCGACATGTTG
ATTCTCCTGTGCGCTGATTGATGAATATGGATGAGTCAACACAACATGTA
GAATCAACAAGATAACCTGTGAAtcctttctcaaattttatggACTGCTC
AGTGAGTGTTTCCTCAATCTCGTGAGGCTGTAAGAGTGTTCCGTTAGAAA
CTGTGTGTAAAAATTTCCTAGATATTCTATGTGGTTGCTGTTGCTTGCAA
AAATAACAAGATCTAACATTTTCTAAAAGGTTGGATGGTGTTGCTGACGA
TGTTAAAGTCCTTTTAGCAAACAGACTATTCCGGGTAATGCCATCAATGA
GAGATATTGgtttaatttgttgtttaaaGTTTTGCGTCACTGCTGCATCG
TTTGTATGATTGTTTGTGCTATTTGTGCTTCCATTAACTTTGGAAACAAT
ATACCTCTTCCCAGCACGACGTACAGTCTGATACATTCCACAATCCAGTC
ATCAAGGTTATTGTTTATCATACATTGTTTatgaattcttaaaa Run BLAST on NCBI protein sequence of TCONS_00011065-protein >TCONS_00011065-protein ID=TCONS_00011065-protein|Name=TCONS_00011065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp
MYQTVRRAGKRYIVSKVNGSTNSTNNHTNDAAVTQNFKQQIKPISLIDGI
TRNSLFAKRTLTSSATPSNLLENVRSCYFCKQQQPHRISRKFLHTVSNGT
LLQPHEIEETLTEQSIKFEKGFTGYLVDSTCCVDSSIFINQRTGESTCRS
CGVKQSWEEFLKEKTEGRQSQDGIKGTLETFIRVGGENSLWESSVDVSEI
NAPESPIYFETFRHFDIRLAPDNTIVYPYYDVSKSKVVKCVSHGNEKRII
EIMNTSHESLFGWNTISPADKTLILTTTELDAMSVFHVTGLPSLSISSTE
ISLHPDLFPFLEQFNKIVLWFPSTYREQESLQNFSRKLDLKRCWKVQCND
SPFSLLEKQQSSEISDSISTSKHMSHDRILTFKDLRSDLFNELMNAKMNA
GVPFTRFPALNEYLKGHRRGELTVFTGATGSGKTTFLSELSLDLCLQGVK
TLWGSFEIRNVRLLNTLMHQFAGFAVEKHMDKFMKWSENFESLPLYFMSY
YGAQDLQDVINTIEYSVYMHDIEHVIVDNLQFMTSTSYSSSDDRFQVMDR
SIAAFRRCASDLNIHITVVVHPRKENDGGSLQTASIYGSAKASQEADNVL
ILQTSDQLSMQITKNRFCGTVGMLPLSFHPDSLCLSGFHRNVETEEEILP
ALRIRRPVSNVKIYRKNNNDNK Run BLAST on NCBI transcript from alignment at sc0000119:506682..509125 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011065 ID=TCONS_00011065|Name=TCONS_00011065|organism=Clytia hemisphaerica|type=transcript|length=2444bp|location=Sequence derived from alignment at sc0000119:506682..509125 (Clytia hemisphaerica)
ttttaagaattcatAAACAATGTATGATAAACAATAACCTTGATGACTGG
ATTGTGGAATGTATCAGACTGTACGTCGTGCTGGGAAGAGGTATATTGTT
TCCAAAGTTAATGGAAGCACAAATAGCACAAACAATCATACAAACGATGC
AGCAGTGACGCAAAACtttaaacaacaaattaaacCAATATCTCTCATTG
ATGGCATTACCCGGAATAGTCTGTTTGCTAAAAGGACTTTAACATCGTCA
GCAACACCATCCAACCTTTTAGAAAATGTTAGATCTTGTTATTTTTGCAA
GCAACAGCAACCACATAGAATATCTAGGAAATTTTTACACACAGTTTCTA
ACGGAACACTCTTACAGCCTCACGAGATTGAGGAAACACTCACTGAGCAG
TccataaaatttgagaaaggaTTCACAGGTTATCTTGTTGATTCTACATG
TTGTGTTGACTCATCCATATTCATCAATCAGCGCACAGGAGAATCAACAT
GTCGAAGCTGTGGTGTCAAGCAAAGTTGGGAAGAATTTCTTAAAGAAAAG
ACAGAAGGACGACAGTCTCAAGATGGTATTAAAGGAACCTTAGAAACATT
TATTAGAGTAGGCGGTGAAAATTCTTTATGGGAGTCATCTGTTGATGTCA
GTGAGATCAATGCTCCAGAAAGcccaatatattttgaaacttttcgtCAT
TTTGATATACGTCTAGCACCTGACAATACAATTGTTTACCCTTATTATGA
TGTTAGTAAGTCGAAGGTTGTCAAGTGTGTTTCACATGGCAACGAAAAGA
GGATTATTGAAATCATGAACACAAGCCATGAATCTTTATTTGGTTGGAAT
ACGATTTCCCCTGCAGATAAAACTTTAATATTAACAACTACAGAGTTGGA
TGCGATGAGTGTTTTTCATGTCACTGGTTTACCATCATTGTCAATCTCAA
GTACAGAAATATCACTCCATCCAGACCTTTTCCCTTTTTTAGAACAATTC
AATAAAATTGTACTTTGGTTTCCTAGCACATATCGTGAACAAGAAAGCTT
gcaaaatttttccaggaaattaGATTTGAAACGATGTTGGAAAGTTCAAT
GTAATGATTCACCATTTAGTCTTCTTGAAAAACAACAGTCAAGTGAAATT
TCAGATTCAATATCCACTTCAAAGCACATGTCACATGATCGGATACTTAC
CTTTAAGGATTTGCGCTCTGACTTATTTAATGAATTGATGAATGCTAAAA
TGAATGCTGGGGTTCCCTTTACTAGGTTCCCAGCTTTAAATGAATATTTG
AAAGGACATCGTAGAGGAGAATTGACTGTTTTTACTGGGGCTACTGGTTC
TGGTAAAACAACGTTCTTGAGTGAACTTTCATTAGATTTATGTTTACAAG
GCGTTAAAACGTTGTGGGGTAGCTTTGAGATTAGAAATGTGCGATTATTA
AACACATTGATGCATCAATTTGCTGGCTTTGCTGTTGAGAAACACATGGA
TAAATTTATGAAATGGAGTGAAAACTTTGAGAGTCTACCACTATATTTTA
TGTCGTATTATGGTGCTCAAGATCTACAAGATGTAATAAATACAATAGAG
TATTCAGTTTATATGCATGACATTGAGCATGTTATCGTTGATAACCTTCA
ATTCATGACTTCTACGTCATATTCAAGTTCAGATGACCGCTTTCAAGTGA
TGGACCGTTCTATTGCAGCTTTTCGACGCTGTGCATCTGATCTTAATATC
CACATAACTGTAGTGGTCCATCCACGTAAAGAAAATGATGGTGGATCCCT
GCAAACAGCTTCTATCTACGGGTCAGCAAAAGCTAGCCAGGAAGCTGATA
ATGTGTTGATCCTCCAAACATCAGATCAACTTTCAATGCAAATTACCAAG
AATCGATTTTGTGGAACTGTTGGAATGCTTCCACTAAGTTTTCATCCAGA
CTCGCTGTGTTTGTCTGGTTTTCATCGTAATGTGGAGACTGAGGAAGAAA
TTTTACCTGCCTTGAGGATAAGGCGTCCTGTTAGCAATgttaaaatttat
agaaagaaTAATAACGATAACAAATAAGAATTACGAAATTTAGGTAGACC
TTTTTGAGACTTTTAGAACGTTGATGTGAATCTGTCTTTTCAAAATCAGG
TTATTCCGGTGCACACTTTTGCAGAAGAAATTAAAATGACCTTTCCATTG
ATTAACTACCCATAATAACAGCTTCTTAAAGTTTCTTTCTGAAAGAactc
tttttcagtttttggacCTANTTATTTTTAGAATAcatattttggaattt
ttcagatttagatttttttgaagtttataaagatttttataCAAAGTTTG
taactatttttcattttagtacGCTTAggagagaaaaagaaatatttatt
ttatattccCCTTTTTGAATTTTACGGAGAAGAAAGCTTTACAA Coding sequence (CDS) from alignment at sc0000119:506682..509125 >TCONS_00011065 ID=TCONS_00011065|Name=TCONS_00011065|organism=Clytia hemisphaerica|type=CDS|length=2019bp|location=Sequence derived from alignment at sc0000119:506682..509125 (Clytia hemisphaerica)
ATGTATCAGACTGTACGTCGTGCTGGGAAGAGGTATATTGTTTCCAAAGT
TAATGGAAGCACAAATAGCACAAACAATCATACAAACGATGCAGCAGTGA
CGCAAAACtttaaacaacaaattaaacCAATATCTCTCATTGATGGCATT
ACCCGGAATAGTCTGTTTGCTAAAAGGACTTTAACATCGTCAGCAACACC
ATCCAACCTTTTAGAAAATGTTAGATCTTGTTATTTTTGCAAGCAACAGC
AACCACATAGAATATCTAGGAAATTTTTACACACAGTTTCTAACGGAACA
CTCTTACAGCCTCACGAGATTGAGGAAACACTCACTGAGCAGTccataaa
atttgagaaaggaTTCACAGGTTATCTTGTTGATTCTACATGTTGTGTTG
ACTCATCCATATTCATCAATCAGCGCACAGGAGAATCAACATGTCGAAGC
TGTGGTGTCAAGCAAAGTTGGGAAGAATTTCTTAAAGAAAAGACAGAAGG
ACGACAGTCTCAAGATGGTATTAAAGGAACCTTAGAAACATTTATTAGAG
TAGGCGGTGAAAATTCTTTATGGGAGTCATCTGTTGATGTCAGTGAGATC
AATGCTCCAGAAAGcccaatatattttgaaacttttcgtCATTTTGATAT
ACGTCTAGCACCTGACAATACAATTGTTTACCCTTATTATGATGTTAGTA
AGTCGAAGGTTGTCAAGTGTGTTTCACATGGCAACGAAAAGAGGATTATT
GAAATCATGAACACAAGCCATGAATCTTTATTTGGTTGGAATACGATTTC
CCCTGCAGATAAAACTTTAATATTAACAACTACAGAGTTGGATGCGATGA
GTGTTTTTCATGTCACTGGTTTACCATCATTGTCAATCTCAAGTACAGAA
ATATCACTCCATCCAGACCTTTTCCCTTTTTTAGAACAATTCAATAAAAT
TGTACTTTGGTTTCCTAGCACATATCGTGAACAAGAAAGCTTgcaaaatt
tttccaggaaattaGATTTGAAACGATGTTGGAAAGTTCAATGTAATGAT
TCACCATTTAGTCTTCTTGAAAAACAACAGTCAAGTGAAATTTCAGATTC
AATATCCACTTCAAAGCACATGTCACATGATCGGATACTTACCTTTAAGG
ATTTGCGCTCTGACTTATTTAATGAATTGATGAATGCTAAAATGAATGCT
GGGGTTCCCTTTACTAGGTTCCCAGCTTTAAATGAATATTTGAAAGGACA
TCGTAGAGGAGAATTGACTGTTTTTACTGGGGCTACTGGTTCTGGTAAAA
CAACGTTCTTGAGTGAACTTTCATTAGATTTATGTTTACAAGGCGTTAAA
ACGTTGTGGGGTAGCTTTGAGATTAGAAATGTGCGATTATTAAACACATT
GATGCATCAATTTGCTGGCTTTGCTGTTGAGAAACACATGGATAAATTTA
TGAAATGGAGTGAAAACTTTGAGAGTCTACCACTATATTTTATGTCGTAT
TATGGTGCTCAAGATCTACAAGATGTAATAAATACAATAGAGTATTCAGT
TTATATGCATGACATTGAGCATGTTATCGTTGATAACCTTCAATTCATGA
CTTCTACGTCATATTCAAGTTCAGATGACCGCTTTCAAGTGATGGACCGT
TCTATTGCAGCTTTTCGACGCTGTGCATCTGATCTTAATATCCACATAAC
TGTAGTGGTCCATCCACGTAAAGAAAATGATGGTGGATCCCTGCAAACAG
CTTCTATCTACGGGTCAGCAAAAGCTAGCCAGGAAGCTGATAATGTGTTG
ATCCTCCAAACATCAGATCAACTTTCAATGCAAATTACCAAGAATCGATT
TTGTGGAACTGTTGGAATGCTTCCACTAAGTTTTCATCCAGACTCGCTGT
GTTTGTCTGGTTTTCATCGTAATGTGGAGACTGAGGAAGAAATTTTACCT
GCCTTGAGGATAAGGCGTCCTGTTAGCAATgttaaaatttatagaaagaa
TAATAACGATAACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011065-exon-sc0000119-1491911889:506682..509125 | TCONS_00011065-exon-sc0000119-1491911889:506682..509125 | Clytia hemisphaerica | exon |
| TCONS_00011065-exon-sc0000119-1510915933:506682..509125 | TCONS_00011065-exon-sc0000119-1510915933:506682..509125 | Clytia hemisphaerica | exon |
| TCONS_00011065-exon-sc0000119-1575043694:506682..509125 | TCONS_00011065-exon-sc0000119-1575043694:506682..509125 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000119 | supercontig | sc0000119:506682..509125 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007694 | DNA_helicase_DnaB-like_C |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006260 | DNA replication |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006260 |
DNA replication |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
BLAST of TCONS_00011065 vs. Swiss-Prot (Human)
Match: PEO1 (Twinkle protein, mitochondrial OS=Homo sapiens GN=TWNK PE=1 SV=1) HSP 1 Score: 364.77 bits (935), Expect = 1.044e-113 Identity = 218/537 (40.60%), Postives = 316/537 (58.85%), Query Frame = -2
Query: 479 SIFINQRTGESTCRSCGVKQSWEEFLKEKTEGRQSQDGIKGTLETFIRVGG---ENS-----LWESSVDVSEINAPE-----------SPIYFETFRHFDIR-LAPDNTI-----XXXXXXXXXXXXXXXXSHGN----EKRIIEIMNTSHESLFGWNTISPADKTLILTTTELDAMSVFHVTGLPSLSISSTEISLHPDLFPFLEQFNKIVLWFPSTYREQESLQNFSRKLDLKRCWKVQCNDS-PFSLLXXXXXXXXXXXXXXXKHMSHDRILTFKDLRSDLFNELMNAKMNAGVPFTRFPALNEYLKGHRRGELTVFTGATGSGKTTFLSELSLDLCLQGVKTLWGSFEIRNVRLLNTLMHQFAGFAVEKHMDKFMKWSENFESLPLYFMSYYGAQDLQDVINTIEYSVYMHDIEHVIVDNLQFMTSTSYSSSDDRFQVMDRSIAAFRRCASDLNIHITVVVHPRKENDGGSLQTASIYGSAKASQEADNVLILQTSDQLS------MQITKNRFCGTVGMLPLSFHPDSLCLS 1981
S+FI++ TG C + + SWE+F + EGR G E F+ E+S +W ++ + E+ E + + +T + F +R L P ++ + K+++ G+ E+ I + H +LFG IS D ++LT+ ELD++++ TGLP+L++ L P L P+LEQF +IV W R E+ + F+RKL+ KRC+ V+ D P L +S + T+ H I++F+ LR ++ EL N + AG+ ++RFP LN LKGHR+GELTVFTG TGSGKTTF+SE +LDLC QGV TLWGSFEI NVRL ++ QFA +E +DK+ W++ FE LPLYFM+++G Q ++ VI+T++++VY++DI HVI+DNLQFM S+ DR D I FR+ A+D N H+T+V+HPRKE+D LQTASI+GSAKASQEADNVLILQ ++ +Q++KNRF G VG+ PL F+ +SL S
Sbjct: 101 SLFIDKTTGHFLCMTSLAEGSWEDF-QASVEGRGD-----GAREGFLLSKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPARSLVFPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYH-NLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPRGTTCLPPALLPYLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVRPGDQQPRPLEALNGGFNLSRILRTALPAWHKSIVSFRQLREEVLGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLST-DRIAAQDYIIGVFRKFATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQVSKNRFDGDVGVFPLEFNKNSLTFS 629
The following BLAST results are available for this feature:
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