TCONS_00011062 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011062
Unique NameTCONS_00011062
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011062 ID=TCONS_00011062|Name=TCONS_00011062|organism=Clytia hemisphaerica|type=transcript|length=358bp
tttcaaagtagattttaatttttattaagtATCTAACTTTTATATGGAGA
atttaattagatttttgatTAATTACTAGAGTTTATTAAGATATGGATGA
ACAAGCgccagaaaaagaaaagatagaaAATGAGGATGAACCGCTGATCG
ATACCTCTGAGAAAATTGGCGACGAATCGAATGGAATCGATAATAATGAT
CCGATAGAGAACGATACTACTGGAGAACATACTCAGTATGAGTCAGCACA
TTTAGATCTTTCTAAAACACCATCTGATAACACACTTTCAGCTTCTAATG
AAAATTTTGCAAGAGATGAGCGTTCTGCAACAAATTCACCGAGACAAGGT
ACACATCA
Run BLAST on NCBI

transcript from alignment at sc0000119:392368..392725

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011062 ID=TCONS_00011062|Name=TCONS_00011062|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at sc0000119:392368..392725 (Clytia hemisphaerica)
TGATGTGTACCTTGTCTCGGTGAATTTGTTGCAGAACGCTCATCTCTTGC
AAAATTTTCATTAGAAGCTGAAAGTGTGTTATCAGATGGTGTTTTAGAAA
GATCTAAATGTGCTGACTCATACTGAGTATGTTCTCCAGTAGTATCGTTC
TCTATCGGATCATTATTATCGATTCCATTCGATTCGTCGCCAATTTTCTC
AGAGGTATCGATCAGCGGTTCATCCTCATTttctatcttttctttttctg
gcGCTTGTTCATCCATATCTTAATAAACTCTAGTAATTAatcaaaaatct
aattaaatTCTCCATATAAAAGTTAGATacttaataaaaattaaaatcta
ctttgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006200XLOC_006200Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011062-exon-sc0000119-1491911889:392368..392725TCONS_00011062-exon-sc0000119-1491911889:392368..392725Clytia hemisphaericaexon
TCONS_00011062-exon-sc0000119-1510915933:392368..392725TCONS_00011062-exon-sc0000119-1510915933:392368..392725Clytia hemisphaericaexon
TCONS_00011062-exon-sc0000119-1575043694:392368..392725TCONS_00011062-exon-sc0000119-1575043694:392368..392725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:392368..392725 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.714317	0	0	0	1.92659	0	3.67347	2.86588	0.601941	1.24267	0.723699	0.317154	2.21699	2.30237	1.35204	6.23908	3.21741	2.56491	0.506223	0	1.84171	2.3581	1.36504	1.48922	6.13544	4.1068	0.32649	0	0.264279	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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