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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011058 ID=TCONS_00011058|Name=TCONS_00011058|organism=Clytia hemisphaerica|type=transcript|length=1545bp TTCTTAAAGGTAACAAGTATTGGTCTACTCTTGTCATCAGCTTTAGATCC AAatctcaattttcaataaataaattctttcaGTCATTCTTCAACCTTCT TGGTAGAATCCTCTGTCGTTCATGTTATACATTTACGcttaaaatggtga aaaaacttttttatttattcaagGCAAATAGCATCTGTCTTGAAATGCCA TATCATAGCTCAAGAAATCAGATCAAATCAGAATACATGATCATCCCAGG TTGAAATGTATATACATTCAATTGCCCCTTATGGTTATTGAATAATAAAA GgcatttattgaaaataaatgatgAACTTTTATAAGGTAAATAATCTGAT TAAAAGTTATACCAggaaataaagaattaaaaaggaCACTAGCTtagtaa attttggaaaatgtaAAACTTAACTTGGAATAAAAAGAGGTTGAATATAA ATTATGTTTCAGAAGTGAAATGTATGATAACATTCATGTTGGATCAGAAG TGGATGTTTCGCGCAATGATGGTGAAATTTTGAAGGGCAAAGTCAGATGG AAAGGTTCAATAGCAAACAGGAAGGGACATTGGATTGGTGTCGAGCTAGA TACTCCAGatGGGAAACACGATGGCATTCTAAACAGAAGAAGATATTTCC AATGCAAAGCATATCATGGAATATTTGTACGGCCTTCACAAGTtcgattt tcactaaaacaaaCGCGGAGGAAATATGTGAAATATCGCACACTATCATC ACAATCAATAGTTGACGAGGCACTGTTTTTCAGAGGAAATTTGGAAGCAA GTCAATCAGGAGGTGTTTCTGCAATATCAATGGACAGCCCTGTCTTTGAA CAAATCAAAGATATCATGAAAGATTCGCGTTGTGAGTTTCCCTATCAACA ATCTACATATCGAAAAGCACACATGGTTGGTAACCAATTGAGACCTGCTA AACATGATTTTAGAAAGGGCGGTTTATCCTTCACTTCGTTACAAATTTCT CCACGAGATATCAAAAGAACTGATCCTAGTAGTAATTATTTCCTGCCGAA GAGTTCTCGTTCTTGGACAGCACACGAAACGTTCAGAAGCCCGTCATCTA TACCAGTTATAGATAGGAAACCAGCTCATTGCTCCTCTACCGAACGCTTT TATGAGATGAAAAGTATATCGAAACATAGTCTAAATAAAACGCTTTGACG CAATAAAAGACTTTTTGAAGGTGGCGTTTCTAAtcttcaaccaatcagat tgagttttctttttgtagattttttctcTTTGGTCATTGTAAGGAAGTTC AACATTGTACGTAACAACAACTTGGGACCACGcgaacaaaattaaaaatg gctTCGGACCCGTGAACTGAATATTTGCCTTCTTATTTGACTGACAGGGA GCTCAGTAATTCCCATCAAGGAGAAGATTTCTAAAAACACCGGCACTTAC AGAACCAGAACTGCTGGATTGGATCCTCGGGAGATTTAACTTAAATAGTG CATTCCGCTGGTTATAAGATAGAGTAATacagtcccggggggggg Run BLAST on NCBI protein sequence of TCONS_00011058-protein >TCONS_00011058-protein ID=TCONS_00011058-protein|Name=TCONS_00011058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MYDNIHVGSEVDVSRNDGEILKGKVRWKGSIANRKGHWIGVELDTPDGKH DGILNRRRYFQCKAYHGIFVRPSQVRFSLKQTRRKYVKYRTLSSQSIVDE ALFFRGNLEASQSGGVSAISMDSPVFEQIKDIMKDSRCEFPYQQSTYRKA HMVGNQLRPAKHDFRKGGLSFTSLQISPRDIKRTDPSSNYFLPKSSRSWT AHETFRSPSSIPVIDRKPAHCSSTERFYEMKSISKHSLNKTL Run BLAST on NCBI transcript from alignment at sc0000119:563940..567562- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011058 ID=TCONS_00011058|Name=TCONS_00011058|organism=Clytia hemisphaerica|type=transcript|length=3623bp|location=Sequence derived from alignment at sc0000119:563940..567562- (Clytia hemisphaerica) TTCTTAAAGGTAACAAGTATTGGTCTACTCTTGTCATCAGCTTTAGATCC
AAATCTCAATTTTCAATAAATAAATTCTTTCAGTCATTCTTCAACCTTCT
TGGTAGAATCCTCTGTCGTTCATGTTATACATTTACGCTTAAAATGGTGA
AAAAACTTTTTTATTTATTCAAGGCAAATAGCATCTGTCTTGAAATGCCA
TATCATAGCTCAAGAAATCAGATCAAATCAGAATACATGATCATCCCAGG
TTGAAATGTATATACATTCAATTGCCCCTTATGGTTATTGAATAATAAAA
GGCATTTATTGAAAATAAATGATGAACTTTTATAAGGTAAATAATCTGAT
TAAAAGTTATACCAGGAAATAAAGAATTAAAAAGGACACTAGCTTAGTAA
ATTTTGGAAAATGTAAAACTTAACTTGGAATAAAAAGAGGTTGAATATAA
ATTATGTTTCAGAAGTGAAATGTATGATAACATTCATGTTGGATCAGAAG
TGGATGTTTCGCGCAATGATGGTGAAATTTTGAAGGGCAAAGTCAGATGG
AAAGGTTCAATAGCAAACAGGAAGGGACATTGGATTGGTGTCGAGCTAGA
TACTCCAGGTTCTTCCATTTCACACTTCGATTTCACACTTCGATTTCAAT
TTTTTGAATGAATCTATTGGGCCATTCCATTTGGAATGCCAATTCCAAAT
GGACGAACATTACCAGAGGTTATTCCGAGAAAAAATTCCAGGTGGTGTCT
TTTCATATTTCAAAGGGGATAAAGAGTTATTCTAAAATTTCCAGGGGGGG
GTAAAAGACTGATTTTTGTTCGTCCATCTTCGTTTAAGGTTTGAAAAGAT
TTTTTCCTAAGGTATTTTTGAAAATGTTGCCATTTTCTAGGGAGTATCCA
CACATTTTCAATAATATTTCTTTTTGACTTGAAAATGTTCATATACCCCG
CATCAAAAGTGTCTTTTTAAAACAGTGGTATATTTGCGGTCATGTCAACC
CAACACATGACCGCAAATATACCACTGCAGGTCACCTGCATAGACTGCAT
GGAAATGATGTTGATACTTTTGTTCATAATAATATTTTTATTTAATTTTT
AGATGGGAAACACGATGGCATTCTAAACAGAAGAAGATATTTCCAATGCA
AAGCATATCATGGAATATTTGTACGGCCTTCACAAGTTCGATTTTCACTA
AAACAAACGCGGTATATAATTGAATAATTGAATAGTCAAATGGATTATTA
GTTCCAAATGACCCTTTTAGGCTGAGCTTAAAGATATATAAGGGAGTTGC
TCATCTTATGCTGACAAAGCAGAATTAACATAAACAAAAAATCTTCTCAT
AATTTGTACTCTTACGGCGCGGGGGAGGAGCATTTTGATAACTACTAAAA
TCTAAGATGACAGTATATACTATTTAAATCATTTTCAAAAAAAAATTACA
TTGTTAAAATTAAAATTTGTTCTTAAGCTTTTACCAACTCTTTTTTCAAT
ATACTTCATTCAAGGCAAATTATTTTAGGGTTATGTACTTTTTTTTCAGG
AGGAAATATGTGAAATATCGCACACTATCATCACAATCAATAGTTGACGA
GGCACTGTTTTTCAGAGGAAATTTGGAAGCAAGTCAATCAGGTCTTTTAA
TTAAGTTTGTTTGTCAATCTCTAATAAATATTTTCACTGGAACGATGTGT
TTTGTGGTCACGTACAGTACGATCTTTCTTATTTTAAAGAAATTATCCCT
CTTAAAGTTTTTGCTCGCCAAAAGGGACATCCTGCCAATTGGGGATTTCG
AATCGTATTATTTATAAGTGCAATAAATCTACCAATTTAACCAAACCCTC
CTAGGGATTACTGAAGTTCTAAGAACATTGATCTAATAGAACTGAAACAT
TTGTAGATATTTTTTCAACAAAGGCGATTTTTAGATCTGCTTTAGAGGTA
TTGCTTGGTCAATAGCGCTATGATGTTATTAAATAATATGAAAAGTGGTA
CTTTATAGCTCAGCAATCAAATATTCGAGGGAGTGCCGCCCTTCCTAATT
TTTACTTTGATCAACAGCTATCGAAGTGGGATTTTTCGGGCCTTCTTAGG
TACAATAGACTCAAATTTATATTATTTTCCCATTTTGTTTCCCAGGAGGT
GTTTCTGCAATATCAATGGACAGCCCTGTCTTTGAACAAATCAAAGATAT
CATGAAAGGTAACAGTCAAACTGACAGATGATGTTATTAATAAAAAAATA
TTGTTTGTTAAATTTAAAACTGTCAAAAACTGCAAAAAAGTGCAACCATC
GGGCCTTATCTACGACAAGAGCTTTGAAACCTTTGTGTATTTCTTTCAAG
TAATTACATTATGGATGTGTGATTAATAAAGTGGGTAATGAGTTTCATGT
CAGTTTCTTTTTCACATTTTTAATCATAGGAGTCAACAAATAGAACTTTT
CGATGCGATTTTCAAAGAAATTTTCAACCGCGTGGTTGATTTTTTAGGGG
TCTGGTAATAAGTTTAGGAAATAACGTCTAAATTCTTTCTTTTATGAGAA
TGTCATTACAATGACTTCAGATATTTTGACGATATTCCTTCCCGGTAAAC
TCGAACCCAGTGTCCTCGCGCTTAAAAGGTTGATGGGTGTAGAAATTGAC
TTCCAAGCCTGAAGGGCTAGACTCGAGACTCCTAGATGGGAAATGAAGCC
ACTTATTTTCCATCCAGAATGCCCGTCCGTTGTTTTTACACAAACGCTGG
ATTGAAACCAAAATCTATCGCTAGATTTCAAAAGATACAGTCTTCAAAAA
CAAGGGAACCGCTAAATACAATCCTTTGTCATCATTTTAGGCGTGTTTGG
ATGGGAAATAAATGGCTTCACTTTTTCTTGCCTCGGAAAGGTTAGAGATT
ATACTGTAGCCCTTCGGGCGTATAACATTTCTTTTAATTGTTACGTTTAG
ATTCGCGTTGTGAGTTTCCCTATCAACAATCTACATATCGAAAAGCACAC
ATGGTTGGTAACCAATTGAGACCTGCTAAACATGATTTTAGAAAGGGCGG
TTTATCCTTCACTTCGTTACAAATTTCTCCACGAGATATCAAAAGAACTG
ATCCTAGTAGTAATTATTTCCTGCCGAAGAGTTCTCGTTCTTGGACAGCA
CACGAAACGTTCAGAAGCCCGTCATCTATACCAGTTATAGATAGGAAACC
AGCTCATTGCTCCTCTACCGAACGCTTTTATGAGATGAAAAGTATATCGA
AACATAGTCTAAATAAAACGCTTTGACGCAATAAAAGACTTTTTGAAGGT
GGCGTTTCTAATCTTCAACCAATCAGATTGAGTTTTCTTTTTGTAGATTT
TTTCTCTTTGGTCATTGTAAGGAAGTTCAACATTGTACGTAACAACAACT
TGGGACCACGCGAACAAAATTAAAAATGGCTTCGGACCCGTGAACTGAAT
ATTTGCCTTCTTATTTGACTGACAGGGAGCTCAGTAATTCCCATCAAGGA
GAAGATTTCTAAAAACACCGGCACTTACAGAACCAGAACTGCTGGATTGG
ATCCTCGGGAGATTTAACTTAAATAGTGCATTCCGCTGGTTATAAGATAG
AGTAATACAGTCCCGGGGGGGGG Coding sequence (CDS) from alignment at sc0000119:563940..567562- >TCONS_00011058 ID=TCONS_00011058|Name=TCONS_00011058|organism=Clytia hemisphaerica|type=CDS|length=3645bp|location=Sequence derived from alignment at sc0000119:563940..567562- (Clytia hemisphaerica) ATTCGCGTTGTGAGTTTCCCTATCAACAATCTACATATCGAAAAGCACAC ATGGTTGGTAACCAATTGAGACCTGCTAAACATGATTTTAGAAAGGGCGG TTTATCCTTCACTTCGTTACAAATTTCTCCACGAGATATCAAAAGAACTG ATCCTAGTAGTAATTATTTCCTGCCGAAGAGTTCTCGTTCTTGGACAGCA CACGAAACGTTCAGAAGCCCGTCATCTATACCAGTTATAGATAGGAAACC AGCTCATTGCTCCTCTACCGAACGCTTTTATGAGATGAAAAGTATATCGA AACATAGTCTAAATAAAACGCTTTGAGAGGTGTTTCTGCAATATCAATGG ACAGCCCTGTCTTTGAACAAATCAAAGATATCATGAAAGGAGGAAATATG TGAAATATCGCACACTATCATCACAATCAATAGTTGACGAGGCACTGTTT TTCAGAGGAAATTTGGAAGCAAGTCAATCAGATGGGAAACACGATGGCAT TCTAAACAGAAGAAGATATTTCCAATGCAAAGCATATCATGGAATATTTG TACGGCCTTCACAAGTTCGATTTTCACTAAAACAAACGCGATGTATGATA ACATTCATGTTGGATCAGAAGTGGATGTTTCGCGCAATGATGGTGAAATT TTGAAGGGCAAAGTCAGATGGAAAGGTTCAATAGCAAACAGGAAGGGACA TTGGATTGGTGTCGAGCTAGATACTCCAGATTCGCGTTGTGAGTTTCCCT ATCAACAATCTACATATCGAAAAGCACACATGGTTGGTAACCAATTGAGA CCTGCTAAACATGATTTTAGAAAGGGCGGTTTATCCTTCACTTCGTTACA AATTTCTCCACGAGATATCAAAAGAACTGATCCTAGTAGTAATTATTTCC TGCCGAAGAGTTCTCGTTCTTGGACAGCACACGAAACGTTCAGAAGCCCG TCATCTATACCAGTTATAGATAGGAAACCAGCTCATTGCTCCTCTACCGA ACGCTTTTATGAGATGAAAAGTATATCGAAACATAGTCTAAATAAAACGC TTTGAGAGGTGTTTCTGCAATATCAATGGACAGCCCTGTCTTTGAACAAA TCAAAGATATCATGAAAGGAGGAAATATGTGAAATATCGCACACTATCAT CACAATCAATAGTTGACGAGGCACTGTTTTTCAGAGGAAATTTGGAAGCA AGTCAATCAGATGGGAAACACGATGGCATTCTAAACAGAAGAAGATATTT CCAATGCAAAGCATATCATGGAATATTTGTACGGCCTTCACAAGTTCGAT TTTCACTAAAACAAACGCGATGTATGATAACATTCATGTTGGATCAGAAG TGGATGTTTCGCGCAATGATGGTGAAATTTTGAAGGGCAAAGTCAGATGG AAAGGTTCAATAGCAAACAGGAAGGGACATTGGATTGGTGTCGAGCTAGA TACTCCAGATTCGCGTTGTGAGTTTCCCTATCAACAATCTACATATCGAA AAGCACACATGGTTGGTAACCAATTGAGACCTGCTAAACATGATTTTAGA AAGGGCGGTTTATCCTTCACTTCGTTACAAATTTCTCCACGAGATATCAA AAGAACTGATCCTAGTAGTAATTATTTCCTGCCGAAGAGTTCTCGTTCTT GGACAGCACACGAAACGTTCAGAAGCCCGTCATCTATACCAGTTATAGAT AGGAAACCAGCTCATTGCTCCTCTACCGAACGCTTTTATGAGATGAAAAG TATATCGAAACATAGTCTAAATAAAACGCTTTGAGAGGTGTTTCTGCAAT ATCAATGGACAGCCCTGTCTTTGAACAAATCAAAGATATCATGAAAGGAG GAAATATGTGAAATATCGCACACTATCATCACAATCAATAGTTGACGAGG CACTGTTTTTCAGAGGAAATTTGGAAGCAAGTCAATCAGATGGGAAACAC GATGGCATTCTAAACAGAAGAAGATATTTCCAATGCAAAGCATATCATGG AATATTTGTACGGCCTTCACAAGTTCGATTTTCACTAAAACAAACGCGAT GTATGATAACATTCATGTTGGATCAGAAGTGGATGTTTCGCGCAATGATG GTGAAATTTTGAAGGGCAAAGTCAGATGGAAAGGTTCAATAGCAAACAGG AAGGGACATTGGATTGGTGTCGAGCTAGATACTCCAGATTCGCGTTGTGA GTTTCCCTATCAACAATCTACATATCGAAAAGCACACATGGTTGGTAACC AATTGAGACCTGCTAAACATGATTTTAGAAAGGGCGGTTTATCCTTCACT TCGTTACAAATTTCTCCACGAGATATCAAAAGAACTGATCCTAGTAGTAA TTATTTCCTGCCGAAGAGTTCTCGTTCTTGGACAGCACACGAAACGTTCA GAAGCCCGTCATCTATACCAGTTATAGATAGGAAACCAGCTCATTGCTCC TCTACCGAACGCTTTTATGAGATGAAAAGTATATCGAAACATAGTCTAAA TAAAACGCTTTGAGAGGTGTTTCTGCAATATCAATGGACAGCCCTGTCTT TGAACAAATCAAAGATATCATGAAAGGAGGAAATATGTGAAATATCGCAC ACTATCATCACAATCAATAGTTGACGAGGCACTGTTTTTCAGAGGAAATT TGGAAGCAAGTCAATCAGATGGGAAACACGATGGCATTCTAAACAGAAGA AGATATTTCCAATGCAAAGCATATCATGGAATATTTGTACGGCCTTCACA AGTTCGATTTTCACTAAAACAAACGCGATGTATGATAACATTCATGTTGG ATCAGAAGTGGATGTTTCGCGCAATGATGGTGAAATTTTGAAGGGCAAAG TCAGATGGAAAGGTTCAATAGCAAACAGGAAGGGACATTGGATTGGTGTC GAGCTAGATACTCCAGATTCGCGTTGTGAGTTTCCCTATCAACAATCTAC ATATCGAAAAGCACACATGGTTGGTAACCAATTGAGACCTGCTAAACATG ATTTTAGAAAGGGCGGTTTATCCTTCACTTCGTTACAAATTTCTCCACGA GATATCAAAAGAACTGATCCTAGTAGTAATTATTTCCTGCCGAAGAGTTC TCGTTCTTGGACAGCACACGAAACGTTCAGAAGCCCGTCATCTATACCAG TTATAGATAGGAAACCAGCTCATTGCTCCTCTACCGAACGCTTTTATGAG ATGAAAAGTATATCGAAACATAGTCTAAATAAAACGCTTTGAGAGGTGTT TCTGCAATATCAATGGACAGCCCTGTCTTTGAACAAATCAAAGATATCAT GAAAGGAGGAAATATGTGAAATATCGCACACTATCATCACAATCAATAGT TGACGAGGCACTGTTTTTCAGAGGAAATTTGGAAGCAAGTCAATCAGATG GGAAACACGATGGCATTCTAAACAGAAGAAGATATTTCCAATGCAAAGCA TATCATGGAATATTTGTACGGCCTTCACAAGTTCGATTTTCACTAAAACA AACGCGATGTATGATAACATTCATGTTGGATCAGAAGTGGATGTTTCGCG CAATGATGGTGAAATTTTGAAGGGCAAAGTCAGATGGAAAGGTTCAATAG CAAACAGGAAGGGACATTGGATTGGTGTCGAGCTAGATACTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00011058-exon-sc0000119-1575043694:566955..567562 | TCONS_00011058-exon-sc0000119-1575043694:566955..567562 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1575043694:566352..566460 | TCONS_00011058-exon-sc0000119-1575043694:566352..566460 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1575043694:565922..566013 | TCONS_00011058-exon-sc0000119-1575043694:565922..566013 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1575043694:565355..565417 | TCONS_00011058-exon-sc0000119-1575043694:565355..565417 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1575043694:563940..564612 | TCONS_00011058-exon-sc0000119-1575043694:563940..564612 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1510915933:566955..567562 | TCONS_00011058-exon-sc0000119-1510915933:566955..567562 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1510915933:566352..566460 | TCONS_00011058-exon-sc0000119-1510915933:566352..566460 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1510915933:565922..566013 | TCONS_00011058-exon-sc0000119-1510915933:565922..566013 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1510915933:565355..565417 | TCONS_00011058-exon-sc0000119-1510915933:565355..565417 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1510915933:563940..564612 | TCONS_00011058-exon-sc0000119-1510915933:563940..564612 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1491911889:566955..567562 | TCONS_00011058-exon-sc0000119-1491911889:566955..567562 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1491911889:566352..566460 | TCONS_00011058-exon-sc0000119-1491911889:566352..566460 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1491911889:565922..566013 | TCONS_00011058-exon-sc0000119-1491911889:565922..566013 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1491911889:565355..565417 | TCONS_00011058-exon-sc0000119-1491911889:565355..565417 | Clytia hemisphaerica | exon |
TCONS_00011058-exon-sc0000119-1491911889:563940..564612 | TCONS_00011058-exon-sc0000119-1491911889:563940..564612 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000119 | supercontig | sc0000119:563940..567562 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR000938 | CAP-Gly_domain |
Blast
The following BLAST results are available for this feature:
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