TCONS_00011054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011054
Unique NameTCONS_00011054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011054 ID=TCONS_00011054|Name=TCONS_00011054|organism=Clytia hemisphaerica|type=transcript|length=1829bp
TAGATTAGTTGAAAATGGTGAATTTTGTAGATTGATGCTTTGTTGAAAAG
AGTTCCTCAACAAAATGGACGATGAGAATGATGAAGAAAGGAGTGTTTCA
TTGGAAACTGGAGAAGTTGAAGATGCCTTTGGAGAAACATTTATCCCCTC
CATATCAGACCGTTTACAAATTGGGTATGCTGCATCTGATAAGGCCTGTC
AAACACAAGCAAGTGAGATTATTAACctcaaaaaaatgtcagatGTGCTT
GGAATTGTGATAAAGGATATTTCCATGCTGAAGAGGAGCCTCTACTTTTC
AAAGTTGACATTGCAAGCTGAGTATGATGGCAGATTGGAAGCTGTTGCTT
TTGAGTTGTATAACCGTGTCAATAAACGTGTTGCTGAAATTGAAGCTATT
CATAAAGAGCGCATTGATGTCATCCGAAGGAGCTATAAACAACAAATGTC
CAATGCTTTAGCCAAGCTTTCACGtgattatcaaattttttatgGAGATA
AGGATGCTATTCTGGAAGCTGAGAATCGTAAGAAATTGGAAGAGATGAAT
CGACACAAAGAGATGATGAGAAAAAACGAGTTAGCTCAGAAAGAGATGTA
CGAAATGCTGCAAATGCAGATGGAAGAAGATAAAGCTAAACAAGAGATAG
TACCTTCACGTAAAAGTTCAGCTGCATCTATAGGTGGCTTCCTGGATGAA
ATCGATGAGCTTAATACAGTCATAAAAGcAACAATAATatatcaacaaca
aaaaattcatcaagtaACTTTGCAATACACAGTGGATAAGgactttgttt
ttgaaatcttgTGCTGAATaccattttcataaattaccaTCATGGATATT
CAAAAACAGATCCAGCAAGATTGGGAGAATCGAGAATATATTGAAGCTAT
TACGTCAGCAATAAAAAAGATGGCAactttcttgaataactttgaCATTG
CTTGTAAATCGAAACTTGCAGATTTGGACACTAAATTAACTGGACTTGAA
CAGAAAATTGAATTCATTGAAGCTAGAGTAACAAAAGtaaaagAATTATA
AATTGAAAACACAAGCAAAACATGACATTGAAGGAAGAAACAGTCAAATT
ATTCCTGACCAATCATTTCCAAGGTGAGAAAACCAAACTCTCATCCGAAG
CATTGGCAGCTTTCACCAAGTTGATTGAACTGTTCATCCAAGAAGCTATC
GACAGATCTTCACAACAAGCCGACCTCGAATCCGTAGAGCAAGTTGATAT
TGACCATTTAGAGAAAGTATTGCCACAACTGCTGTTGGATTTCTAGAAAA
GTAGAAAAGATGTTTTAATTTGATCCCTGGAAGTTTGATTTGGATTTTGG
TTCTCCTTTTACTTTGAACATTGAAAAATAACTTATGACGGCAAGTTCGT
TATCGGAGAAATTGTTGAATATAAACTGGTAAATACACTAGATTGAATAT
CTATCAACTGACAGAACAACGCATCTACTTTTTAACACAATTTGTGTCTT
TTGGACGAATTTATTGGTTAATTTATTGATCACAGAAGGTTTTTGGTTGA
TATCTTCCAAAAACCTCTCGAAATTTTTGCTGTAGTAATATTGATTTTAA
GataatgattgattgattttaaaattttgtgttgaCATATCGTCCCTCAC
ATATTCCGGAATGATCCTCTACATgggcaatctcaatctcaaagatgacc
accacagtaaaactctaaatttcataaggtattaattttgagattaaaCA
TTAAGTCATGTGAGGGACGATATGTAGATtatgtaacaacacccctgcct
cacagcccctgTGGAATTTGTCCCACAGT
Run BLAST on NCBI

protein sequence of TCONS_00011054-protein

>TCONS_00011054-protein ID=TCONS_00011054-protein|Name=TCONS_00011054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MDDENDEERSVSLETGEVEDAFGETFIPSISDRLQIGYAASDKACQTQAS
EIINLKKMSDVLGIVIKDISMLKRSLYFSKLTLQAEYDGRLEAVAFELYN
RVNKRVAEIEAIHKERIDVIRRSYKQQMSNALAKLSRDYQIFYGDKDAIL
EAENRKKLEEMNRHKEMMRKNELAQKEMYEMLQMQMEEDKAKQEIVPSRK
SSAASIGGFLDEIDELNTVIKATIIYQQQKIHQVTLQYTVDKDFVFEILC
Run BLAST on NCBI

transcript from alignment at sc0000119:471104..477631-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011054 ID=TCONS_00011054|Name=TCONS_00011054|organism=Clytia hemisphaerica|type=transcript|length=6528bp|location=Sequence derived from alignment at sc0000119:471104..477631- (Clytia hemisphaerica)
TAGATTAGTTGAAAATGGTGAATTTTGTAGATTGATGCTTTGTTGAAAAG AGTTCCTCAACAAAATGGACGATGAGAATGATGAAGAAAGGAGTGTTTCA TTGGAAACTGGAGAAGTTGAAGATGCCTTTGGAGAAACATTTATCCCCTC CATATCAGACCGTTTACAAATTGGGTATGCTGCATCTGATAAGGCCTGTC AAACACAAGCAAGTGAGATTATTAACCTCAAAAAAATGTCAGATGTGCTT GGAATTGTGATAAAGGATATTTCCATGCTGAAGAGGAGCCTCTACTTTTC AAAGTTGACATTGCAAGCTGAGTATGATGGCAGATTGGAAGCTGTTGCTT TTGAGTTGTATAACCGTGTCAATAAACGTGTTGCTGAAATTGAAGCTATT CATAAAGAGCGCATTGATGTCATCCGAAGGAGCTATAAACAACAAATGTC CAATGCTTTAGCCAAGCTTTCACGTGATTATCAAATTTTTTATGGAGATA AGGATGCTATTCTGGAAGCTGAGAATCGTAAGAAATTGGAAGAGATGAAT CGACACAAAGAGATGATGAGAAAAAACGAGTTAGCTCAGAAAGAGATGTA CGAAATGCTGCAAATGCAGATGGAAGAAGATAAAGCTAAACAAGAGATAG TACCTTCACGTAAAAGTTCAGCTGCATCTATAGGTGGCTTCCTGGATGAA ATCGATGAGCTTAATACAGTCATAAAAGGTAACGAATCTCGTATTTATTA CTTAGAAGAATGCTTGGAAGAAATTGGTTTGGAAAACAAGAAAATGACAA CTGAATTGGAAGATAAAAATGAAAAATTACGTGCTGAAAAATTGAAATCT GCTGCTTTGAGAAGGGATTTGGATGATTTGAAACAAGCTTTTGAACGTGA AAAGGAGGAATCAAGATCAAGACTTGAAGCACAAAGAAAGAGTCTAACAA TTGAGATGAAAAATCGTTTGGATGAACAGAAAACTGAACATCAAAGGGAT TTAGGCCAGAAAATGGAAAGCTTGAAAGAAGGACAGAATGAACAGATGAG GCACCAAAAATTCGCTGAGGAAGCTCGTTTGAAAGCAGCTTTGGCTAAGC AAGAAGAAAACAAAGTTGTAGTTGAAGTCCCTACTGAAGATACTGACTTA TCAAGACTCCAAATGTTAGAAAAGAGACAGCGTGCAGAAATTGCTCGATT ATACAAAAAGCTAGAGGCGTTATCTGCAGTATCTGATATGAAGATAAGAG TGTTAAATGAACATATTCATTCATTGAAAGATGAAATGTTCTTGAGGCAA ACTTTACATCGACAAACGGCAAAAGTCAAACAAGCTACAGTGACCTATGT GCGTCGCGGATCAGAGATTGTTCCTATNAAATTACTTTTTATACTTTGAT ACATAAATATACGTATCTATTCTTAACACTTTGAAAACCTTTTGGATTAA TCATAATACTATTCAGTAAAGACAGCTAAGGCCTTTGAAAAATAAAATTT ATGCTACGTCAAAAAAAACATTACTAGGTAATTACTTTCAGTTACAGGAA GTATACCTCCCCGACGGAAATGTTTCAAAAGAGAGGGGGTCCAACCAGGT CTATAACTTAAAATATACATACTCCTAAATTTTAATTCTCGTGGAGTGAT TTCTGTTCCATAGTTAATATTTTTTAAAGTTCATAATATATATTTTTGTG TAATATTTTNGTTCGTAGACACGTTTTGCCAAGTATCATAAGCGCTCCTT CCACCGCCAATTCTGTGAATCCAATTGATTCTGTTCAACAAGTAAAAAAG CAATAGAATGAGTGTATATTGACCCAAAGTCATTGAACGTTAACACAGAC TGAACACTTCTGAATGATTTTCAAGTTGCTCTTTTAATTTTGTTCTCGTA AACTTGTTAATTATTTCAAGGGGCTCTGATATAAGTTTAACCTCTTGCTT CCAACCGTAATACACGTTTTTTTATAAGAACAAACTATATAAGAACATAA GCTTCGAGGCCCAAAAATTTAAGAACATACTAAGGCTTTGGAAACTTAAA AACATGCAATTTCTTAAGAAATTACATCAAAATGCTCAAACAATGCTGAA AATAAGAACATTTTAAGAACATTTTTAGGCTTCAAATCCAAAAAACTAAG AACATCCGAAGGCTTCGAAAATTTTTGACGTTCTTATAAAAAAAAACGTG TACCTTAGTGCCAATGACCTGATCACTTGTTAGTTTAATTGAATGAACCA ATGGGGATGATAAAAATATTTCCCTTTTAATATTTAGGTGGGGATTTCGT ATTTGATTGTTTTTAGTTGCGATAGTGCTTCAGCCCTAAAATTCTTATGT GTTATTCTTATGTGTTACCCAAGAATTACTTTTTATACTTTGATACATAA ATATACGTATCTATTCTTAACACTATTTGAAAACCTTTTGGATTAATCAT AATACTATTCAGTAAAGACAGCTAAGGTCTTTGAAAAATAAAATTTATGC TACGTCAAAAAAAACATTACTAGGTAATTACTTTCAGTTACAGGCAGTAT ACCTCCCCGACGGAAATGTTTCAAAAGGGAGGGGGTCCAACCAGGTCTAT AACTTAAAATATGCATACTCCTAAATTTTAATTCTCGTGGAGTGATTTCT GTTCCATAGTTAATATTTTTTAAAGTTCATAATATATATTTTTGTGTAAT ATTTTTTAAAGTTCATAATATATATTTTGTGTGATATTTTTAAAGTTGTT TATAATAGAGGTGTGTAATATTTTTACTATTTTCTTGTATCTATGATTTT AGGTGCAGGTTTTTCTTGAAAACATTTCTTGTATTTTTATTAAAAACTAA GGTTTTTAGCAGTGTGGAAACTCAATCCTTCTTGTTCTTGAATCTTGGCT GAATAATTGTGTTTATACTCTAAAACGACTGAGAAAGTATTTTGATGTGT TTTGGATACAATTATTTTGATTATGTATTTCATACATTTTTTTCGTTATT TTCAGCAACAATAATATATCAACAACAAAAAATTCATCAAGTAACTTTGC AATACACAGTGGATAAGGACTTTGTTTTTGAAATCTTGTGCTGAATACCA TTTTCATAAATTACCATCATGGATATTCAAAAACAGATCCAGCAAGATTG GGAGAATCGAGAATATATTGAAGCTATTACGTCAGCAATAAAAAAGATGG CAACTTTCTTGAATAACTTTGACATTGCTTGTAAATCGAAACTTGCAGAT TTGGACACTAAATTAACTGGACTTGAACAGAAAATTGAATTCATTGAAGC TAGAGTAACAAAAGGTGAAACTTTGTCTTAATTTGGTAGCAGAGATTTGA TATTAACTTTATGGTAATTTTGTTTTCTTTATGTGTAAATGTTTATAATG AAAATCGCGATTTAATTTGTTGTACAATTCTCAATTCGTGCTGTAAAAGA TGTTGCATTGCAAAAAGATTCGAACATAATTCACACATGTTTTAAAAGCA TAGAAAGATTTTCTCAATCTTCTTAAGGCTGTTGCACCTTTGCAGTAGTG AATTTTAAAATGGCGTCAAGGGACAATATCTTCTTACGTTCCTTATTAAT TTATTTATGTTTTGTTACGATTACTGCATTTTTTGTATAATTATTTCTAC TTTGGAAAATAGTCTATGTAATTTTATAGTTTTCGTCTCTACTAAAGTTT TTTAGACTCGATGATATGACAACATTAGAATTATTTTGCTTCCAACAATA AAACTTCATCCCTCTTCCATGTTTAAGAATTTGAATGGCTGTTAGCATTT TCTAACAAAAGTACTTTTATAGATAGATATTTTGTTAATGTCTTGGTACT TGCGAACTTATTTTGCGAACTTATTTTGATGTTGTTCTTACTACCAAAAT ATTAAGATTTGACCTTGATTCCAAAGATGACGGCCAGATTCTTAAAATCA GTAAGGTTTTTGAAATTACTCTGCATACAAAGAAAACAATTTAGTTCTTA CATTACCACAACTCCTTTAAAAGTATTAAAGCACAAAATCTTAACCAGAA ACTGATGTAAAATAAATAAAATAAGATTCAGTATACAAAAGTTAAGGCTT GGGGACACGAGAAGTTTTTTTCGCGTTGGTGCAATACAACATGCTCCATC CCACCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNTGCTTGCAAATCGAAACTTGCAGA TTTGGACACTAAATTAACTGGACTTGAACAGAAAATTGAATTCATTGAAG CTAGAGTAACAAAAGGTGAAACTTTGTCTTAATTTGGTAGCAGAGATTTG ATATTAACTTTATGGTAATTTTGTTTTCTTTATGTGTAAATGTTTATAAT GAAAATCGCGATTTAATTTGTTGTACAATTCTCAATTCGTGCTGTAAAAG ATGTTGCATTGCAAAAAGATTCGAACATAATTCACACATGTTTTAAAAGC ATAGAAAGATTTTTTCAATCTTCTTAAGGCTGTTGCACCTTTGCAGTAGT GAATTTTAAAATGGCGTCAAGGGACAATATCTTCTTACGTTCCTTATTAA TTTATTTATGTTTTGTTACGATTACTGCATTTTTTGTATAATTATTAATA GTAATTTTATAGTTTTCGTCTCTACTAAAGTTTTTTTGACTCGATGATAT GACAACATTAGAATTATTTTGCTTCCAACAATAAAACTTCATCCCTCTTC CATGTTTAAGAATTTGAATGGCTGTTAGCATTTTCTAACAAAAGTACTTT TATAGATAGATATTTTGTTAATGTCTTGGTACTTGCGAACTTATTTTGCG AACTTATTTTGATGTTGTTCTTACTACCAAAATATTAAGATTTGACCTTG ATTCCAAAGATGACGGCCAGATTCTTAAAATCAGTAAGGTTTTTGAAATT ACTCTGCATACAAAGAAAACAATTTAGTTCTTACATTACCACAACTCCTT TAAAAGTATTAAAGCACAAAATCTTAACCAGAAACTGATGTAAAATAAAT AAAATAAGATTCAGTATACAAAAGTTAAGGCTTGGGGACACGAGAAGTTT TTTTCGCGTTGGTGCAATACAACATGCTCCATCCCACCAACCTGAAACGC TTTCTTGTGTCTCCACCCCATTTTTCTTTCTACCAATAAAAGTGAAATCT CACTTTTGTCCCAGGGACAAAATCGGTGTGTCTTTTGGGTATTTCCCTCA CTTTTTGTCCCATGAAACAAAAAAAGAAACCATGGGACACACATTTTTTT CTTGTGTTGGTGGGATAGGGCATGTTGCATTGCACCAACCTTTATTCTTC TACTTGTTTAATGATTGTTCCTCATTTAATTTTAAGTAAAAGAATTATAA ATTGAAAACACAAGCAAAACATGACATTGAAGGAAGAAACAGTCAAATTA TTCCTGACCAATCATTTCCAAGGTGAGAAAACCAAACTCTCATCCGAAGC ATTGGCAGCTTTCACCAAGTTGATTGAACTGTTCATCCAAGAAGCTATCG ACAGATCTTCACAACAAGCCGACCTCGAATCCGTAGAGCAAGTTGATATT GACCATTTAGAGAAAGTATTGCCACAACTGCTGTTGGATTTCTAGAAAAG TAGAAAAGATGTTTTAATTTGATCCCTGGAAGTTTGATTTGGATTTTGGT TCTCCTTTTACTTTGAACATTGAAAAATAACTTATGACGGCAAGTTCGTT ATCGGAGAAATTGTTGAATATAAACTGGTAAATACACTAGATTGAATATC TATCAACTGACAGAACAACGCATCTACTTTTTAACACAATTTGTGTCTTT TGGACGAATTTATTGGTTAATTTATTGATCACAGAAGGTTTTTGGTTGAT ATCTTCCAAAAACCTCTCGAAATTTTTGCTGTAGTAATATTGATTTTAAG ATAATGATTGATTGATTTTAAAATTTTGTGTTGACATATCGTCCCTCACA TATTCCGGAATGATCCTCTACATGGGCAATCTCAATCTCAAAGATGACCA CCACAGTAAAACTCTAAATTTCATAAGGTATTAATTTTGAGATTAAACAT TAAGTCATGTGAGGGACGATATGTAGATTATGTAACAACACCCCTGCCTC ACAGCCCCTGTGGAATTTGTCCCACAGT

Coding sequence (CDS) from alignment at sc0000119:471104..477631-

>TCONS_00011054 ID=TCONS_00011054|Name=TCONS_00011054|organism=Clytia hemisphaerica|type=CDS|length=1506bp|location=Sequence derived from alignment at sc0000119:471104..477631- (Clytia hemisphaerica)
CAACAATAATATATCAACAACAAAAAATTCATCAAGTAACTTTGCAATAC
ACAGTGGATAAGGACTTTGTTTTTGAAATCTTGTGCTGAATGGACGATGA
GAATGATGAAGAAAGGAGTGTTTCATTGGAAACTGGAGAAGTTGAAGATG
CCTTTGGAGAAACATTTATCCCCTCCATATCAGACCGTTTACAAATTGGG
TATGCTGCATCTGATAAGGCCTGTCAAACACAAGCAAGTGAGATTATTAA
CCTCAAAAAAATGTCAGATGTGCTTGGAATTGTGATAAAGGATATTTCCA
TGCTGAAGAGGAGCCTCTACTTTTCAAAGTTGACATTGCAAGCTGAGTAT
GATGGCAGATTGGAAGCTGTTGCTTTTGAGTTGTATAACCGTGTCAATAA
ACGTGTTGCTGAAATTGAAGCTATTCATAAAGAGCGCATTGATGTCATCC
GAAGGAGCTATAAACAACAAATGTCCAATGCTTTAGCCAAGCTTTCACGT
GATTATCAAATTTTTTATGGAGATAAGGATGCTATTCTGGAAGCTGAGAA
TCGTAAGAAATTGGAAGAGATGAATCGACACAAAGAGATGATGAGAAAAA
ACGAGTTAGCTCAGAAAGAGATGTACGAAATGCTGCAAATGCAGATGGAA
GAAGATAAAGCTAAACAAGAGATAGTACCTTCACGTAAAAGTTCAGCTGC
ATCTATAGGTGGCTTCCTGGATGAAATCGATGAGCTTAATACAGTCATAA
AAGCAACAATAATATATCAACAACAAAAAATTCATCAAGTAACTTTGCAA
TACACAGTGGATAAGGACTTTGTTTTTGAAATCTTGTGCTGAATGGACGA
TGAGAATGATGAAGAAAGGAGTGTTTCATTGGAAACTGGAGAAGTTGAAG
ATGCCTTTGGAGAAACATTTATCCCCTCCATATCAGACCGTTTACAAATT
GGGTATGCTGCATCTGATAAGGCCTGTCAAACACAAGCAAGTGAGATTAT
TAACCTCAAAAAAATGTCAGATGTGCTTGGAATTGTGATAAAGGATATTT
CCATGCTGAAGAGGAGCCTCTACTTTTCAAAGTTGACATTGCAAGCTGAG
TATGATGGCAGATTGGAAGCTGTTGCTTTTGAGTTGTATAACCGTGTCAA
TAAACGTGTTGCTGAAATTGAAGCTATTCATAAAGAGCGCATTGATGTCA
TCCGAAGGAGCTATAAACAACAAATGTCCAATGCTTTAGCCAAGCTTTCA
CGTGATTATCAAATTTTTTATGGAGATAAGGATGCTATTCTGGAAGCTGA
GAATCGTAAGAAATTGGAAGAGATGAATCGACACAAAGAGATGATGAGAA
AAAACGAGTTAGCTCAGAAAGAGATGTACGAAATGCTGCAAATGCAGATG
GAAGAAGATAAAGCTAAACAAGAGATAGTACCTTCACGTAAAAGTTCAGC
TGCATCTATAGGTGGCTTCCTGGATGAAATCGATGAGCTTAATACAGTCA
TAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006194XLOC_006194Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011054-proteinTCONS_00011054-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011054-exon-sc0000119-1575043694:476904..477631TCONS_00011054-exon-sc0000119-1575043694:476904..477631Clytia hemisphaericaexon
TCONS_00011054-exon-sc0000119-1575043694:474318..474626TCONS_00011054-exon-sc0000119-1575043694:474318..474626Clytia hemisphaericaexon
TCONS_00011054-exon-sc0000119-1575043694:471104..471895TCONS_00011054-exon-sc0000119-1575043694:471104..471895Clytia hemisphaericaexon
TCONS_00011054-exon-sc0000119-1510915933:476904..477631TCONS_00011054-exon-sc0000119-1510915933:476904..477631Clytia hemisphaericaexon
TCONS_00011054-exon-sc0000119-1510915933:474318..474626TCONS_00011054-exon-sc0000119-1510915933:474318..474626Clytia hemisphaericaexon
TCONS_00011054-exon-sc0000119-1510915933:471104..471895TCONS_00011054-exon-sc0000119-1510915933:471104..471895Clytia hemisphaericaexon
TCONS_00011054-exon-sc0000119-1491911889:476904..477631TCONS_00011054-exon-sc0000119-1491911889:476904..477631Clytia hemisphaericaexon
TCONS_00011054-exon-sc0000119-1491911889:474318..474626TCONS_00011054-exon-sc0000119-1491911889:474318..474626Clytia hemisphaericaexon
TCONS_00011054-exon-sc0000119-1491911889:471104..471895TCONS_00011054-exon-sc0000119-1491911889:471104..471895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:471104..477631 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.1703 14.431 15.5281 20.0484 3.9098 2.95341 0.488009 1.32366 4.00308 2.19447 1.90418 3.19057 0 0 1.28054 1.36731 2.92814 3.80955 0 0.246757 2.26104 3.73652 6.67735 5.23675 9.38931e-08 0 3.43528 1.07629 2.77741 3.12526
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR031651DUF4709
Blast
BLAST of TCONS_00011054 vs. Swiss-Prot (Human)
Match: BRK1 (Protein BRICK1 OS=Homo sapiens GN=BRK1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.862e-23
Identity = 43/67 (64.18%), Postives = 58/67 (86.57%), Query Frame = 2
Query:  848 IQKQIQQDWENREYIEAITSAIKKMATFLNNFDIACKSKLADLDTKLTGLEQKIEFIEARVTKVKEL 1048
            +Q++I QDW NREYIE ITS+IKK+A FLN+FD++C+S+LA L+ KLT LE++IE+IEARVTK + L
Sbjct:    8 VQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTKGETL 74          
The following BLAST results are available for this feature:
BLAST of TCONS_00011054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRK11.862e-2364.18Protein BRICK1 OS=Homo sapiens GN=BRK1 PE=1 SV=1[more]
back to top