TCONS_00011052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011052
Unique NameTCONS_00011052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011052 ID=TCONS_00011052|Name=TCONS_00011052|organism=Clytia hemisphaerica|type=transcript|length=705bp
GTAGCTTTTTAAAACTGCTTCGAAATCTTTGAATTTATCCAGCATGTATT
TGCTAGCCAAATCAAGTGTAAAAAGAcctgtaaataaaaattttctacTT
CGGTGAAATCaagaattttcttaactttttcgaCCAATTTTTTCTATTAT
CACTCAAGGAAGCTCCAATTGATAAAATACGATCAAAGCTTTAAAAATAA
TTCAGTTAAaggctttatttcgctattagCCTGTCTAGAATTTAAAGTCT
TGCTTACATCTAAAATTTTCGGACACGGCAATTAAAATCGAAAGTCTCGC
AGAAACAGCACCAGCTCAAGTGGTTGAATTGACCTGTCACGTCCCGTCCT
TATCAAAGTTCCAGTAGAAAGTCATTCTAAAGAAAGATGGGTGAACATTT
GACAGCAGAACAACTCGCTAGAACTGGCTGGAAATTCCATTTCAACAATG
ACACAATTAGAGGACGTAGAAATATTGTACTAGCCAACCTTGGAACCTAT
GTTGGATTATTCTTCCTTTACAAATTGACCAAGAAGACCAAACCTGCTGC
TTAATTGTGAACTGTTGTAAATTTGTGATCATTGGAATTATGtttatttc
aaatataatatgtttttaaataacAACAACACTTGATAAATTCCTCTGAA
TATGTATTTTCTTAAAtcgtttgaaaattaaaaatgtttccTCTTCTaat
taaat
Run BLAST on NCBI

transcript from alignment at sc0000119:457505..466147-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011052 ID=TCONS_00011052|Name=TCONS_00011052|organism=Clytia hemisphaerica|type=transcript|length=8643bp|location=Sequence derived from alignment at sc0000119:457505..466147- (Clytia hemisphaerica)
GTAGCTTTTTAAAACTGCTTCGAAATCTTTGAATTTATCCAGCATGTATT
TGCTAGCCAAATCAAGTGTAAAAAGACCTGTAAATAAAAATTTTCTACTT
CGGTGAAATCAAGAATTTTCTTAACTTTTTCGACCAATTTTTTCTATTAT
CACTCAAGGAAGCTCCAATTGATAAAATACGATCAAAGCTTTAAAAATAA
TTCAGTTAAAGGCTTTATTTCGCTATTAGCCTGTCTAGAATTTAAAGTCT
TGCTTACATCTAAAATTTTCGGACACGGCAATTAAAATCGAAAGTCTCGC
AGAAACAGCACCAGCTCAAGTGGTTGAATTGACCTGTCACGTCCCGTCCT
TATCAAAGTTCCAGTAGAAAGTCATTCTAAAGGTATGTTTAGGCATAAGG
TTTTAGTGTCTCTCTGTTTTTTTTTAGCTCAATCTAATTTCTTAGGGTCT
GGGAAGCGAACACTTATTTGGTGTAGACTACTGTGTACTGATGACCTCCC
TTTTTTTTCGGGCCACTTGGCAATTTCCAGACAGTGTCAATCGAACAAAA
ATTGCGATCAAACCAATTATAATGTAATCAACGCGATCAAATAATTGCGA
TTCGATTGTTGGGCCTGGAATCTTAATCAAATGACTGATTCCTGGGTAAA
TATTCAGCTCCAGGCTACGACCCAGCCACGGCATGGCCCGAACATGTTCG
GGCATGTTTTTGGGCCATGCAGTATAGAGTCCCCTGCCCAGTTGGCGACC
GGTCCAGTTGGCGACCGAACGTCTTTGAACCCAGAAAAGTCAGTGTAGCT
GGAACCTCGATATTCCAGGATTAGAAAAAGCTATACCTGTTATCTTTTTT
CTTTAAAGAATCAACAAACCATCAACATCAATAAATTACACACATTTACT
CAGAAACTTTTAAAGTTAGCTGCCATTATGACTTTCTTGAAGCCGTTTCG
AAATGAACCAATCGGGTTATGTATCGGAATTCCTATGGGAGTTCTTTTCC
AAAATTTGTAAAATAGCTAAGTCGGCAAAAAAACTTTTCACGGGGGTTTG
AGGAACAACAGAACTGCTATCATTTGTTTGTTATTTAACCAGATATTTAA
ATTTGAGCTCAAAAATACTTAAAAATAAATAAGTTAATAATATTAAATAT
TCTATTTGTATCTTTATTTTCAAACACTTACAGAACGACATCGTTTATCA
TTTGGAATACCCTCGTATTTGGACCATTCTATTGTTGGCGCAAAATAGGG
CGGAAACTAAGTAGCACCCTCAGTGCAAGATTGCCGCCTCATCTTTATTT
GCCCGCGCGAGAATGCCAGCTAATCACTTTTTTCTCGCGCACTCAAGGGG
AAAAGGAAAGTGATCGATATTCTTTGAAGGAAAAACGTCAGAAACAAACC
CAAAGACCAAATAATGTATTTTGTTGTTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCTGTGAAGATGAAAAAATTTCTGCTTTGCGT
TTTTTTCGGAACGCTGAAAAACTCTAACTTCGATCTTCCTTTAAGGTAAA
GAGGTTGCGAGATTTGGGTCAGCAAGGCAAAAATTGCTAAAAAGCTGGTA
AAATCGTAATCCTCAAAAATCGAAGTTCCAGCCTCACTGAAAGTCATACA
AAAACAAACCTCTGGAAAATTTCTTTTGGTAGTAATCTGCCTTGACCTAT
TTCCCGTACTGTGTAAAAAAAGTTCTAGAAAAGAACGAGTAGAATCCGAA
AGATCCAACTTTGTACGGAAGCACATGAAAAACCCGGATTTTTCGAAAAA
AATAAAAAATGGCTACCTGTGGACAAAAAAGCCTCGTAAGAAAAAACGCT
TCAAACTCCCACTCCAAAAAATACTTGTCCAAAACGATGAATATGTTAGA
AAGCATTTCTGTAAAAATCAGCTCGATACAGTTTTTTTCGTTTGAAATAT
TGATAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAATGGTTATTTAGCAAGAAATAGTGGTTTTAT
TCTCTAGAATAATTCCATCAGAAAGAAATCTTGTATTAAAACTGTGTTTA
TGGCTGATTTTACAGTTTAGTTATGTATGCATAGTATGACGTTCATATAT
TTTTATTTTTAACCTTTTTTAGATAGATATTATTATATTTTCGCTGTATG
ATAGGTATTTTAAGAAAATTCTGAGTTTTCTTAAATTAACAAATTTTGGT
GCCTTTCTAGCCAATCTAGGGGGTAAAAAATCTGAAAAATTTCGGGCCCT
TCGCCCCAACCATGGCCTGCGGGTATCACTGTATACCTAAATATCTCTAT
TAAGAAATTTTCCGTCTCACAGAAAAAAACTGCTTTTACCACTGTTAACA
GCTTAACGTTTATTGTACCCGGATATTTGTCTATCCGGAATAAAGTCCGT
AGCCCCTCTGTTACGATTTCGGGCGCGTTTGAGTGACGGAATACTATGCC
ACAACAAACCTCCTCTGGCGCTAAAAGGATAGAGGAAAAGTGTGTAATGC
GTTATCGGAAGTAATTTCCCGATTTACATTCCGAATTTGGCTTTGAAAAG
AAGCTAATATATGGTGGCGGAGCAGCACAAACTTGTCAAACAAAATTGGT
TTGTTTATTGAACTGATCGAACCGAAACCCATTGATCGAACTTAATCGAA
CACTCACAATCTTTTAAAAAATCTTAGAGTTCAATTAATTTTTTTAATCA
AACTTTAATCGTTCGATTGAGTTCGATTAGTGACTATGTGAACACTATGA
CACTTACTACGTGGTGGTGTAATAATTGAAAATCTGAAAGACAGTTACTC
CAAAGTGGAGTAAGTGCAGAAATGGGTGGTCCTTCTTTAAAAAATGGGAA
CTTCTGTTACTATTTTTTGTACTAACTGCAGCTGACTGCAGCTAAAATTT
AAAGATTTCACAATTTTTTTCTGGAATATAACATCAATTATTCAATAAAA
AAAGATAAAAACATTAAAATAAAAATTAATTTTTATCCAGCTTATTGACC
TCATTAAGCCCCGATTTGGACATACAATGCCAAGGATCACTACAGAGGTG
TACACACTAACCACAAATTCAATGATTACGTCACAACTAAAGAGAGGGAG
GCAATGAAATCTATCTCGAAAAAATCAAAAGTCAAAGGAGCAAAACAATA
ACTAAATTTACATTTGATCAGATCTTTGAAACTCATATTTGTCATTTATA
AACATTAAACTATATATAGTGTTTTTCTAGAGAAGTAATTGTTTTCCATT
TTATATTTAGCCTTATTATGGTTCTTTTTGTTTATTTGTCCAGTTTTATA
TCATTTAAGTACAACTAGGTTAACAGTTTTATTTCAAAGCAGAATATTTA
GAAAGATAATTTGAAAGTCATTTAAAGCATATAAACTAAAGGAATATTAT
TGACTTTGAATCTCTTAAAACTGCTTAAGAAAGTATTCCTAGGAGTGGGG
AATTGCGTATCTGGTATATTTTCTTGATACGTAAGTTTAGTAAATGCTGT
AGGGCAATTTTAGGGGGTGGTATGTGCATTTTGGAGAGCAAAAACACTTA
CTCCAAAGTGGAGTAACTACAAGGGTGGTGGTGTTAGCATAAAAATTTGA
AAATTGCAGTTACTCATCATCATGTCATGGGGGTAACTGCGTGACCCCCC
CCCCCTGTCTGGACTCAGAGAAAAATAAAGAGTTTTAACCTTTAAATCTA
ATCATAATTCCTTCTTGTTTAAACTTTCACAAAGTCATGTTCCCTCATGC
GCCGCCATCTTGAATTTAGAATTAGAGGCATGTCGGAAAACTAGAGCTGA
GTTTATCTCACCCAATAAAAACGCACGATTCACAAAGGAAAACCACTTTC
GTTTTCACCTATCAAAATGCCAATGTGAGTTATTGTGGAAACCCAGGGTG
AATGAGCATATAAAATAGCAGAAAATAAGGCAGCAATCACAAATATCTTC
GTTTTGCGTCGCCCGACCGACTCCTGAAAATTGAGTAAAATTGAGTCAGA
GAGTCGGTAAATTCTTCGGACTTTTTGTTTTGATGACGTTTCCTTTGCTC
AAAAATTTTATTATAGCCGATTTTTTTGAGTGATTTCTAGCGCATTCGCA
ACATTCTAACTTTGTTTATCATTACACGTGCCATTATGTGTCAAAGATCA
CAGTGTTTAAACTTCATAATCTGAAACCACGCAAAACATACACGCGATTG
GGCCTCCTGTCGCCTCAGTTAACACCCTTTTACCTTTTACCGCCTCACAG
ACCAATTTTAAGAAAACCCGANTCGCCTCAGTTAACGCCCTTTTACCTTT
TACCGCCTCAAAGACCAATTTAAAGAAAACTCAAAAATTTTTATTACCAA
CCTACTACTACTAACCTTTTTGGAGTGTATTCTTGAAGGAAACTGCCAGC
CAGCCGGCAGCCAAAACAACCGCGTGTTATGGATGGTTTCAAATTATGAC
CTTTGAATGTTGAACAAAGTCAAAATGCCGCGAATGGGCTAGAAATTGCT
CGCAAAAAATCGGCAATAATAAAATTTTGAACGAAGGAAACGTCATTGAC
AGAAAAAGTCTGACAAATTTACCAACTCACCGACTCAATTCTACTCAATT
TTTGAGAGTCAGTCGGGCTACGCAAAAGGAAGATATTTGTGCTTGCCACC
TAACTCAAAGTAAATCAACTCTAATGATTGTCATTCCATTCTTATGGCTG
GGGCTTCTTACGGCTTTGGTTTTAGGTCAATGTTTTTGGTTTTTCTCAAA
GATATATGTTAGAGGAAAGTCCATTGAAGACGGGAAATCAAGGAGACAAT
TTCATGAGAAGTTATGAACAGAGAAATGCACTGTTTTTGGTCTTCGATAG
CAAGCGAGTGAGAAGACGCGCATGGCATGAGAAACAAATAAAATGAAGAC
CATTATGTTTTGAACTTTGTATCATTGAAAAGGGTTTTGATGATAATAAT
TACATTAAGAATGAATATTAATTAAAATAAATAATTAAATTAATGATATC
AATGAAGATTTTCAACATCAATTAATAAACAATAGATTAGAATATATAAA
ACATGAAGTCCTGAAATTACACATAGGATAGTAGAAACTTTCGGAAGAAG
CTGGTCCGAACATGTTCGGACCAATCTAAAGAAAGAAATAATCGCGTGGT
GGATCATTCCAGGCTAAGTCAGACCCCCTGGAAAAGTTCGTCAATACCCC
TGTATGATTTAAAAATGGAATTAGCCCATTTTCGAATACTATCTTGATTG
GTTGATACCTCCCTTTCTCCTCTCTCTCTCTTCCGTGAATACTCCAATCC
TCTGTGTGTTTTCAAATGTCCTGGAGCTGGATACCCAGTTGTAATCCAAG
GATTCTGTGTACTTGATAGATTTATTGTCGTATATTTTCGTTGTATTCTC
AGGATCCTCCAAATGTTCTTTGATTCCATGGAAAATTAGATTGCATGCTG
TGGATTTTTCATTGTTTGTCGACTCTTCGAGATATTTTCTCCACTTTATT
TGATTGTTGATTCGTCTGTTTGGATACAGCTTTAGCATAGCTAAACTCTT
TTGCCTCTTGCTTGTTTTCGACTGAGATGTTCTGGATCTTTGTTTCTTAT
CTTCTTCTCGAGTATGCTCATCTTTGTTTTGAGGCTTTCTTTCTATGTTG
GATAAGATTAATTGACTGCACAGGATTACAAATAAATTAGCCTACTCTTT
TAAGAGCATAACACGCTTTTTGTGTAGGGTAAAAATGGGAAATGTGAAAT
AAATTTTGGCAAAAGATTTTTTTTTAAATGACCCTACTGTACAAGATTTG
GCTGTATTCTATTATATTCTATTAAATAATCACATAATACGCTAACTAAT
TTTTGCGGAACTAATTTTTGCGGTTTTTGGTGTCTACCGTGAAAATTAGT
TGAACCGCGAAATGTAATTTTTACTAAAAATCCTCAAAAGCCTCTAGGAT
TATGAAAAAATTTCTATTGCAAAAAATGGTTGTCAACCACAAAAAAAATT
CTCTAAAATGCGCCAATTTAGTTGTGGGTGAAGCATTACTGGTATAATTC
AATATTTCAAGCAAAAATCCCATGAATCCCATGAACTAACTTGTTTGAAA
TCTACAGTGCCAGCTAACTATCAAAGAAAGTTTATAGAAACAGGAACAGT
TTTTTCTACCTAAACTGAAATAGACAAATTATGATACTCCTATTGACAAA
CCTTCTTATTGGTACAAAAGATTTTTTTATATCCAATTTTTATTATAGAA
AGATGGGTGAACATTTGACAGCAGAACAACTCGCTAGAACTGGCTGGAAA
TTCCATTTCAACAATGACACAATTAGAGGACGTAGAAATGTAAGAATCTT
TTATGTGAAGACAGGGTGAAGAAAATCCTGTCCAACTTTTTTCATTCAGG
AAAACCGGTGGCAGATTAGATGTATGAATTTCATCTTATTATTCATAATT
TAAGTGAAAACTTTTAATTTTCATCAGTTTTACCGAAAAATATTCTCGTA
ATTTTCCCTTAAAAACATGAAGTGATCTTTTTTCAACCCTACAAACCAAA
TTCTAGAAAGTTAGGGTAGCGAAAGGTAGGGTAGTGCCCATATTGTTATT
TTGCATAAGATTCCAATTCTCGCACTAAGGTAAATTCGACTGACTTTTCC
AGGATTTTTCTGCTGTTTTTTAAAGGTACAGAAGATGTTGTGTTAACATA
TGAAACTGCCTACCGTTCTGAAGTTATTTTTTCAACTACCCAGAGTTCTG
GTTTTCCACTAGAAAAGTAGCAGTGGTGGAATATTAGTGCAGGAAGTGAA
ACCTGACGCAAAACAACATTAAAAATAGTCTTCTCTGATATTATTAATTC
TAAGAATGAAGAATGTTCTGCAATATTATCGATTGATATTCATTGAACCC
AATTTTTCTAGATTGTACTAGCCAACCTTGGAACCTATGTTGGATTATTC
TTCCTTTACAAATTGACCAAGAAGACCAAACCTGCTGCTTAATTGTGAAC
TGTTGTAAATTTGTGATCATTGGAATTATGTTTATTTCAAATATAATATG
TTTTTAAATAACAACAACACTTGATAAATTCCTCTGAATATGTATTTTCT
TAAATCGTTTGAAAATTAAAAATGTTTCCTCTTCTAATTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006193XLOC_006193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011052-exon-sc0000119-1575043694:465766..466147TCONS_00011052-exon-sc0000119-1575043694:465766..466147Clytia hemisphaericaexon
TCONS_00011052-exon-sc0000119-1575043694:458309..458399TCONS_00011052-exon-sc0000119-1575043694:458309..458399Clytia hemisphaericaexon
TCONS_00011052-exon-sc0000119-1575043694:457505..457736TCONS_00011052-exon-sc0000119-1575043694:457505..457736Clytia hemisphaericaexon
TCONS_00011052-exon-sc0000119-1510915933:465766..466147TCONS_00011052-exon-sc0000119-1510915933:465766..466147Clytia hemisphaericaexon
TCONS_00011052-exon-sc0000119-1510915933:458309..458399TCONS_00011052-exon-sc0000119-1510915933:458309..458399Clytia hemisphaericaexon
TCONS_00011052-exon-sc0000119-1510915933:457505..457736TCONS_00011052-exon-sc0000119-1510915933:457505..457736Clytia hemisphaericaexon
TCONS_00011052-exon-sc0000119-1491911889:465766..466147TCONS_00011052-exon-sc0000119-1491911889:465766..466147Clytia hemisphaericaexon
TCONS_00011052-exon-sc0000119-1491911889:458309..458399TCONS_00011052-exon-sc0000119-1491911889:458309..458399Clytia hemisphaericaexon
TCONS_00011052-exon-sc0000119-1491911889:457505..457736TCONS_00011052-exon-sc0000119-1491911889:457505..457736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:457505..466147 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
180.393	181.492	242.557	288.964	210.667	174.932	252.339	285.395	265.331	215.246	227.329	272.293	173.538	200.476	212.339	216.802	356.163	360.708	125.915	113.302	304.637	296.508	191.335	186.254	301.962	302.05	238.135	194.69	160.051	145.838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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