|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011042 ID=TCONS_00011042|Name=TCONS_00011042|organism=Clytia hemisphaerica|type=transcript|length=1230bp
AAGCCAACCTCATCAAAAAAGGTCTAAAACCTAACAATGCCTAGAGgggt
aaaaaaagaaaatttaccttCAAAAGTTTGTGTGACTTGCGAAAGACCTT
TCACTTGGCGTAAAAAGTGGGAAAAATGTTGGGATGAGGTGACAACATGT
AGTAAGACTTGTaatgcaaaaagaaaagaaaaaaatacagcAAAGCAAAG
GAATGAACGGTGTAATAAAGAGGATAAGATCAATGAACAGAATCAAAGTC
AACTCAGCGACATCAATGAACAATTAAAAAAGGGAGACAATTATGCTGAT
TCAGCGTCGGCTACAAACAATGATGTTGTTGATGAACTTACTGATAGTCT
AAGTATGGTAGAATTGCTTCAGAAAAGCGATAAAGAAACTCCTGAAgaag
aaaactcaaatcatatTGAAGATCAAGTTGCTCAGAAAAAAGCTCTTCGT
AAAGCTGAAAAGAAACGTAAGAAAGAAGAACGCAGAGCTCAACTTGATGA
AAGAGGAgaaaaaactggtcaaaaacaaTGTGATGTGTGtaaaaaaaatg
ttgatttgTTGATAAGGTGTAAAATTGATGAAAGTCAACAATGGAATATG
GTTTGTGGAAAATGTTGGAATGATGTCAGTGGAGGTGTTGTGGATGGTGA
TGCTTCACATCCTCATTACAATTATGGAGGCCTCTGGAAAAATAGGAGAT
AGCTCATattgctttttgaaaaaaattagttgagTTGTATTTAATATCTT
TACCCTTAAAATCTGTGACATAATGGTGATAGCAATGTATGTTCTAGACT
TTAGCACCTCCCTCATATAAGTTCGATACCCTCAGAATTCCTGGTTTATT
CTTTCCtcaaaatgatattttctttcatttataatttttcttttatcagt
GTAAATTAAAGGGGAAAACTgcatattgaaaaaaaatgtttacatACAGA
AGCAGTACATGTGgcaatctatatattaatagcgatgctttgtgtgtctg
tgtgtcaccactttctttttcgctttgtttgtgttttaaaattatgactt
ttagtctcttgctccacaaatttgttctattggattcgcgccatttgctt
tgttttcgattaagtttgttttgattgacagatcgaaTAGAgctttagac
tttattcagcgtttgttttgaaatttaaggcccatctacatttagtaatt
ttaatttctgcccagctttgcccgatcctg Run BLAST on NCBI transcript from alignment at sc0000119:348442..357525- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011042 ID=TCONS_00011042|Name=TCONS_00011042|organism=Clytia hemisphaerica|type=transcript|length=9084bp|location=Sequence derived from alignment at sc0000119:348442..357525- (Clytia hemisphaerica)
AAGCCAACCTCATCAAAAAAGGTCTAAAAGTAAGTATATAAATTGGATAT
TTTAAAATGCTTTCATTTCTCTCCGATGTTTCATTTGTCTGATTTATCTT
TAGCATGAATCTTTGAAATCTTTTTATCAATAATCAAAGTGATTATTATT
ATTTGGCTGATGTTTACGATATTAAAAAATATTAAATACAGCGACCGGTG
TTGTTATTATGGTTATTATTTCTTCTATCTGAAACCTTGCCTTGATTATA
CTAGTTAGTGTAGTGTGACTATTAAAGGAGAATGAAAAAGGAGAGCTGCG
AGCATAGCTGCGTAGTTGTATTTTAATGACCAGCCAGGTCTTTTATTTGT
GATTTGAGGGCTATGATGCACAAGCAGTTAGTCACACTAGCGTCCCGTCA
AAATGCGTATCAAAGATTAATGCTGCGAAAGCGTTATATCGTTTACTTGA
CTCTCAAGCAAAAAAATGTGGCGCAAAACTTCTGAATGGATTCATGAAAA
AATAACCCGGCGCTTTTTAATGAAATTAACATTTTCAAAAACTTTGACAA
ATTGCCTAAAATTTGAGCCATAGATGAAAAGATTTGAGCCAAGCCAACCT
TGAAAACTAATTTGAAGATCAACTTCCCAAGAAAAAGATCTACGGGGGAG
GCGGAACCCACCTAGATCCGCGCACCACCGGATAGGCTGTTTCCCGGAAA
TTTTGCCGGACCTTAATAATGACCCATTTACATATACAGAATTATTTTTA
CTTTAGCGTATAAGCCAGGCCTTAAAAATCGCAGCGCTTTTTTTGTCTGG
AAAACGATAATTACAAGGTCTCAAAAGAAGGTTGTCTATTGCTCATTCCG
ACATTTTAAATTTTCCGGGGGTTTTGTTGTTTGGAATTGATTAACTAACA
GTTAGGTAGGGTCAGGGTTGCTAGTAACGGCTTGTCACTGTGCCGGGTGC
ATAATCGGCGCCTTGGGCCCCGCAGGGTTGCTAGTAACGGCTCGAAGTTC
AGTCAGGTTAAAGGTCGAGGTCGGAATGAGCAATAGACAACCTTCTTTTG
AGACCTTGTAATTATTGCTTCCCGCGCTGTCTCGGGAATTGAATGACAAA
TTTTGGTTGGTTGATTTTGGCTGCTGCACGTTTTATTTTGTTTCAAACTT
TCAAGTTTTAATTAATTGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTTGATTCAGGTAACTCTCATCCTTGTTGTGCAAATA
CATCCTGTAGATGACTGATGTTGTTTTTTCTGAAAGCTAGATTTCCTAGT
GTGACTAACTGACAAGTGTTTCAACTGGTATGTATTCCAACAAAGCCATA
TTTTGGTTAGTCTACACAACAGACAGATCCAGGCTTTTAGGCCTTACTCT
TGGTCTATAGGCACTGCTATAGGCGGCCACTAGTGACCCCCACCAGGAAT
TGCTTATTAATAGGTTTAAACNNTTTATCAATAGAGATTTTAAATAAAAG
AATGTTTAAAACACAGCTGATTGGCTTAGGTTTCGAAACTCTCTATTGTT
TCATTAAAACCTCAGTGCGCATGCGATTTATCTGGAGAATTTCAATATTC
AAAACAAGAGAAGTGCTCATAGCCCGAAGAGTAGGAGTTTTACGCTCGAA
ATGAAGGAAGATATGACGTAGCCTATATTTTGGTTTGTACAGAAATTTCG
CCCGCTCAAATCTTAACAACAAAATGGTCTATCTTACTAAAGCAAAACAT
TGCGGCCACGGTATTTCCCTGTATAAAAATTCTGGTCACGTGACCATCCG
TGATGTTAGACCAATGAAAACGCTTCATTTGCCCGGATTAAAGTTGTGTC
TACACTAACACGCGGGAAATGGCTAGAAAAAGAGAGAAAAAACGGGGGGT
CAAATTAAATTTTTCTCCCTTCTTGCGGCAAACATAAAAGACTTTAAGAG
GCCATTTATTTAAGAAAGGGGTGTTATGTCATGAATAAATTATGTAAGAA
AGTGATATTTTAAGTAACAAGTTCATTAGCAATTTTATTTTGAAATTGAT
GATTTTTGGGGGGTCTTCAAAAAAATACCGTGTGATAGAGCTCTTCAAAC
TGAGCAAAAAAATGTATTATAAGTCCCAACATCTCTAGGCCAAAATTTAT
TGGCCTATTTGTGGTCAAAAACTGATGGAAAACAGGGAATTTCCCCAAAA
TCTGCATTAATTTATGCAAAATTAAACACCTTGCCTTGCAATTTTGCCTG
GAAACGCAAAAAATCGCCAATTACTCGTTACTTGCACGATAATATCGTGG
AAACTTTTTGATTTTGGAATCTAAATATGCTAATTCGCGAGTTTCCACCA
AAAAAAGTTAGTTCTAAGATGTGTGTCACGAAATGAAACATTTATCAACC
TCAGCAGCGGGACTATTCCCCTTTAACTGATAGACTTATAGATAACCTGA
TATAACAGCTGTTGATAATTTTCTTACGCGCACAATAAACCATCAACTGC
TCTAACTTGGGACTATTTGACAAAACATGGGACGGCCATTCAGCGACTAT
TTCACCGAACCTCCAAAGTCATTTAATTAACATACTGGGCCATTCCAAAA
TTTGTATGTAACAGGGGGCGGACAACACAGGATTGCCAAGGGCAAAAGTT
TTCACAAAATTAAAAATTTCCAAGGCGAGAGAAGAAAATGTATGAATTTC
CACGGCAATTGAATTAATAAAAGGCAAAAAAGAGTTGAATTTCTGCCTCA
TTTTGCAAAAGTACATGCATTTTCATCAGAATATCCGACCACCACTGTAA
AAAATTATTTCTGAGGCTAGAAAAAACTAAAAAATGCACGTCGCCCAATG
GGGGGTGGGTAACAAAAATTTTCTGGAATGGCGCACTGCGAATCATAGAT
ATCAAATAATGTTAATTAGGCTACCCTCACCAGATGCTAATCAAAAATTA
ACCCCTGTTTTGTGACATTTTTGATGCCATCCACTATTTTGCTCATAGAA
TGAGGCCATCATGTGGCTTACATGTCAAAATACATCCATGGTTAAGCTGA
GTAATTTATCTACCTGTTGCAACAAGAACGAAATTTTGTGGCTTACTCAA
CTTAAATATATTAAAGCATGAAGTGTGAGTAAAATATGTGGCTGACAAAA
AAGCCACGAAAAAGTACATTTAACAACGCAAAAGTATGTACATTTAACAC
TCTGTGGAAAATTCAGCCTTTCTTCTTTCAAGTCTAGAAGGTCCTATTCA
GAGATCACTTTTCAATATTGTGTGGCTTACACTTTTAAAAAAGTAGAATT
TTTGAACTGCAGCCACAATTTTGACTCAAATAACAAAAAAAAATTTTTAA
TCATATTTCCACGTTGAGGTCTTTTACCCGGTGAAATCTCTATGGCTGAC
TCAAAAAATATGAAGAGTTATTCCAAAAAGTTGATTTTGAGCATTTTTTA
CAATGTCACACTATTTTTGATTAGCATCACCAGGTAGGCTTTCACATCGC
AAAAGGAACAAGTCTTTGCGACGAGAAACGTGTTAACGCAATCACGCACA
TTCGCACAAGCCTCCAAACACAGATATTTTCTTCTGCAGAAAATTGTGAG
ATTTATTATCGACACAAGGTAGCTTTGACATGTCAATCTATCGTGCACGC
TAGAAAAAATACACAAAAAAATGGCGTCTAGATGTGAGCAGTGTGGTTGT
TAATTACCTCTTCAAATTATCTACTTTTAAAATGCTTTGAAAATATACAT
TTGGTTGTTATTATGAGATGGTGAAAGTTTGATTGATAAACTTGGTTCAA
GTATCAAAACAGACTTGTTGTCAAGGAGATTTAAAAAGTAAGTGAAAATA
CAGCCTAGAAATCAACCGTCCCAAGATTTGACCAATCCTCCCAAGTTAGA
GCAGTTGACGGAACCTCTGATGGCGCTTGAAAATTAAGCATTCCTCCTGC
AGAAAATTTTACAACATTCACATACTGAATTTGAAAGATGTTCTATGTAG
CGTTTTTTTTGCAAAAAACTGATTTTTGTCCCGCTTTTGCCAGGCTTTAG
CTTAAAGTGCTTGCATGCAACATAAGGTCCAAATATGCGTTTCTCGTAAT
TTTTGTATGAAGAGTTAGGTCTAAACTGCGGCTAGTTCGAAACACGGGTC
ACGGGTCACGGGTTACGGGTCACGGGGTACGGGTCACGGGTCACGGGGCA
CGGGGCATACAATTTACAGACCGGAAAAAATATAACGATATAGACGTATA
ATTCATGCATAACACGTACTACATAACACATATAATAGTACTAATACTAC
TAGTATAGTATGTCTGAAACAATTATATACGAATAGTATTATCATGAAAA
TCTTTCAATAATATGTCACCCACAAATTTTGACAAAATGATATTGAATGA
CAAAAATATTGTCAAAATCATGAAATATAAGGCCTCTGAACCATTTTACA
GCAAAATGTTTTTTCATAGTCAATAGGATGCTAATCATGTGACTGGATAT
AGATTGACATGTTTTAAAATGATTAAATNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTCTGCAT
TATACACGACGCAAACTTCGAAAGCACGTGGAAAGCACGTGGTTAGGTTT
TAGCGTTTTAAATAGTCATACGTGGATAAAATACCTTAAAATAGATTTTT
TCGATAATTTTTAGTGTTTTTTTAAAACATTTTCTGTTTGAATTACGTTG
ATCTGAGCTGCCCCGTCACCCCGTGCCCCGTAACCCGTGCCCCGTAACCC
GTGCCCCGTGACCCGGACCCGTGACCCGTGACCCGTGTTTCGAACTAGCC
GTCTAAACTGTATTCGTCAGATTGTTAGGTTTTCACACATCCCTTTAGAG
CTTCAGCGTGGTGTGCAGAAAACAATCACAATCTGATCTCAGGTTATTGA
TAGGACACTGCAGTTTATTGTAGAAGTACCGTGAAATCGGGTAACTTGCA
TCAGTGGAGGAGGGAAACTTTCATAGCCATCAAATCCTGACCAATCAAAG
CAGTAAAATTTCAAAACAAATGCAGCTAAGCTTGCAGCTCTATTTTACCA
TTTTAGAATTTCATTGCCGTGCGAGTATTATTGGCGAGTTACTTGCCAAT
AGAATTGCGGGTAAAAAAACTGTGTGGTTGGATGATGAAAAATCATCGCC
CTGTCCTGTTTGAGATCATTATTTTTTGAAAATAAGTCATTTTATCAACA
TAAAGACAATAGAATAATTGATGAGAATTGTTTCTCTACAACTACCCTGC
CTAGCATTTGCCCCCTGACAATTTTTATCTATTTATATTAAAAAGCAATC
TCATTTGGTACTATTGAAATATTTGGTGTAATAAAGCTTAAAGCTTATCA
CACTTAAGTGCCCTGTCGTTCTTTCTTTGTCAAAAAGTGTAATTTCGTCA
AGAACTCCACATATCACTTTTTTGATCTCGCGAAGCCACCATTTTCAACT
TGTTACCCCCTGTTACCCTGTGTTACCCCTGTTACCCTTTATAGTATAGT
AACAATGATTTTAGCACATTTTCATAAACATTCTTCATTTTCTTAATTTT
GCATTCATCAGTGTAAGAATTTCTAAGGCTGTTTGTGTCGTCCGACTGAC
TGACAATTTATCTTCACTTTCGATTCTTTTGAGTTGGAAGGTCCCAAAAT
TGTTGGATTTTCACCCAATTTCATCCTTCACTTCATCTGCCATCTTTAGT
GTTATTATCTCCTCTCCTGTATTGTGAAATCCAATGACCGCGATGACGAG
CTGTCTACATAAACACAGCAAAAAAGCAGGCCGTTTATTTTCAATTTCCA
ATAGATTTGATTTCTACCCAAGTCATATTTTTGAAAATTCATTTTTCAAA
CTTTTTTTTGCCAACCGTCCAAACAACTCATTTTCAGATCATTTAAATGT
GTCAATTATAAGTGGCTTTTTTATTTACTTGACCTGTAAGTGTGAAGTAT
ACAGTATTGTCTGACTGAAGTGAAATGACTCGACACAAAACTTTTACCTG
TTTTTATCCGTAACTATTTTTTTCACTGCCTACTCTTTTTTTTAAGTCAA
TTTAAATATTATATTGTCAAGCTTTGGCTTAATATGGACCATTTGTTTCT
AATTTTTCGTTTCTCAACACTTATGTCAAAGCATACTAAACTGATGGTAT
GTATTGTGTAATTTCATATTTTGTCAAATAGAACAATCAACTGAAGAAAC
ACGCAATGATCAGGGGCGGATACAGGGTATGTGAACATGGTGAATTCACA
CACTCAATTTTCTTGAGATTTGGAAAAATATATTTTCTATAAATTTTTTC
TTGTAGAAGAAATATTTTGTTCTTTCAAAGAAACATAAATGCTTTTTGTA
CACAAAATGTTCAAAAGGTACATCTGTTGATACGTTTCACTTTCTGTGTT
CAAAATGACGTCAAAGAAGCTTTTGTTTGTGTGAGGGAGACTCTCCATCG
TAATAAGTTCTCTAAAGACATTGCATTCATCTTACTATCATACCTCAACG
GTGGAGATTGTTTTGGCAGAATTTCGTGAGGAAAATTACATACTATAAAT
AAAATAGCATACTTTTCACGAATTTTCATTCCTTCAGACTATCGCAATAT
TCGTGTAAACAAATCACCAAACTATGATTCTGTGCTCTTATAAGTAGAGT
GAATCAAAGATATTATATACATGTGTGTGGCATGTAGCGATGGGGTAGAG
TATTCCTTCAATTATCGGATTCACAAATCGGGATTATATTGGAAAATCGG
GGTAAACCGGAATTTTCACACAGTGATAAAAATTCCTGTATCCGCCCCTG
ATGATTTGTTTAAAAAACAACAATGTTTTTTGCAAGCTCAGCTTTCTTTT
CATAAAGATTCAGACCTCACTTTTTTGCACTGTCAATCTGCGAAAGCAGC
CAACGAGGCGACCTTTTTTTCAGATGTGTTCTGAGAGCGTATTTCAGCTA
GAAACTTTTATCTGTTCTGATAAGTTCTCGAAAATTAACTAGCTAGAAAT
AATGATGTGTTCTGATGAGACAGGGGTAAAATCAAGGTCATCCAATGTGT
TCTTGTTGTCTAGGTAACCCAGAACACGTATTTTAAAGAGCCAGGGGTAT
ATAATCAAGAGAAAATAGATGTAATATTGTTGCCTAGTAACCCTAGAAAT
TTTCAGAACACATCTTTTGTGGAGAAAACAAATATCTTACAAGTATATCT
TGGTAAAATGTTTTCCTAGATTTTAGAACACATCGGGCCATAAAGTAATA
ATAAGTTTAGGGAGACAAATATTGTGATAAAGGTTTCCTAGAAATCAGAA
CACATCATTTGTATAAAAAATTGAAGGTTGTAACATGTGGTCGTCTCCTA
GAAAATAAGAACACATATTTCCAAAAATTATCTCCGCCGGCTGCTTCTGA
ATCTGGCTTTCAATATAAAAATACAGTCAACTAACTTATAGTCAACTAAT
TAAAAATTTTGTTTTGGGAAAAAGAAAAAAAAATGGGGCTATTAAAGTTT
GTTCTTTAGAAAAATGTTAAGAACTGTTTGACTTTTACTTGTTTGATTCA
TCATCATTTAACTAAATGGATTTTTTTCAATAGCCTAACAATGCCTAGAG
GGGTAAAAAAAGAAAATTTACCTTCAAAAGTTTGTGTGACTTGCGAAAGA
CCTTTCACTTGGCGTAAAAAGTGGGAAAAATGTTGGGATGAGGTGACAAC
ATGTAGTAAGACTTGTAATGCAAAAAGAAAAGAAAAAAATACAGCAAAGC
AAAGGAATGAACGGTGTAATAAAGAGGATAAGATCAATGAACAGAATCAA
AGTCAACTCAGCGACATCAATGAACAATTAAAAAAGGGAGACAATTATGC
TGATTCAGCGTCGGCTACAAACAATGATGTTGTTGATGAACTTACTGATA
GTCTAAGTATGGTAGAATTGCTTCAGAAAAGCGATAAAGAAACTCCTGAA
GAAGAAAACTCAAATCATATTGAAGATCAAGTTGCTCAGAAAAAAGCTCT
TCGTAAAGCTGAAAAGAAACGTAAGAAAGAAGAACGCAGAGCTCAACTTG
ATGAAAGAGGAGAAAAAACTGGTCAAAAACAATGTGATGTGTGTAAAAAA
AATGTTGATTTGTTGATAAGGTGTAAAATTGATGAAAGTCAACAATGGAA
TATGGTTTGTGGAAAATGTTGGAATGATGTCAGTGGAGGTGTTGTGGATG
GTGATGCTTCACATCCTCATTACAATTATGGAGGCCTCTGGAAAAATAGG
AGATAGCTCATATTGCTTTTTGAAAAAAATTAGTTGAGTTGTATTTAATA
TCTTTACCCTTAAAATCTGTGACATAATGGTGATAGCAATGTATGTTCTA
GACTTTAGCACCTCCCTCATATAAGTTCGATACCCTCAGAATTCCTGGTT
TATTCTTTCCTCAAAATGATATTTTCTTTCATTTATAATTTTTCTTTTAT
CAGTGTAAATTAAAGGGGAAAACTGCATATTGAAAAAAAATGTTTACATA
CAGAAGCAGTACATGTGGCAATCTATATATTAATAGCGATGCTTTGTGTG
TCTGTGTGTCACCACTTTCTTTTTCGCTTTGTTTGTGTTTTAAAATTATG
ACTTTTAGTCTCTTGCTCCACAAATTTGTTCTATTGGATTCGCGCCATTT
GCTTTGTTTTCGATTAAGTTTGTTTTGATTGACAGATCGAATAGAGCTTT
AGACTTTATTCAGCGTTTGTTTTGAAATTTAAGGCCCATCTACATTTAGT
AATTTTAATTTCTGCCCAGCTTTGCCCGATCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011042-exon-sc0000119-1575043694:357497..357525 | TCONS_00011042-exon-sc0000119-1575043694:357497..357525 | Clytia hemisphaerica | exon |
| TCONS_00011042-exon-sc0000119-1575043694:348442..349642 | TCONS_00011042-exon-sc0000119-1575043694:348442..349642 | Clytia hemisphaerica | exon |
| TCONS_00011042-exon-sc0000119-1510915933:357497..357525 | TCONS_00011042-exon-sc0000119-1510915933:357497..357525 | Clytia hemisphaerica | exon |
| TCONS_00011042-exon-sc0000119-1510915933:348442..349642 | TCONS_00011042-exon-sc0000119-1510915933:348442..349642 | Clytia hemisphaerica | exon |
| TCONS_00011042-exon-sc0000119-1491911889:357497..357525 | TCONS_00011042-exon-sc0000119-1491911889:357497..357525 | Clytia hemisphaerica | exon |
| TCONS_00011042-exon-sc0000119-1491911889:348442..349642 | TCONS_00011042-exon-sc0000119-1491911889:348442..349642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000119 | supercontig | sc0000119:348442..357525 - |
Blast
The following BLAST results are available for this feature:
|
