TCONS_00011036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011036
Unique NameTCONS_00011036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011036 ID=TCONS_00011036|Name=TCONS_00011036|organism=Clytia hemisphaerica|type=transcript|length=2237bp
TAGGGTGTAGACAAATTAGAAGCATCCACCGCAAGAAACCGATAGCaaca
agtttttcaaaaacaagatAATTGCTAACATtaataaattatatttttta
tgggCGTGTACACGCTTGGGTAATCAACTATTTCATTGTTTGAAATTGAT
CTGTTTTTTAGCACGAGTAGTTTGATTTGGGATTTGAAGACGTTATGTCA
TTTCCCAAACTAATCTTTCAAATTCTTGTCAACAGTTTATGTTTGTTCAT
TCAAAATTAATTGTTTTGAGCTGAAGTACACAGATATTTTCACATATATA
ACCCTCTTCTGAAACCTTTGTCAAATACAGAATCTCTATGTATCTTGTTT
CGAGAAGTGAAAGAGCAAAACAAGGAGTGGCAGAATAGAAACATCAAATA
TATTGCTTATCAAAGATGAAATCTCTTTTACTCTATCTGTTACTTGCGGT
CTTGGTTGGCAATGCAAACTCGAGGAGATTCTATGCTTCGATTAAAAAAC
CCCAAACATATTGCACATTCAGAGGATATGTTCCCGGAGGCAATAAAATC
ACGGTGGCAAAGATCATTGCTCCTGTGGCGAAAATGCAGAAGAATGTATT
CAGTGGGCTTGCTGgcaatctgggaaaagcaagtGCGGGTGCTCAACATA
CAACGATGTTATTGAAAGGTTTTGGAAAGCTAGCAAACATTGCGCCGAAG
TTGGGTCCAGCTCTCGGTTTGTTTGGTGTTGGATTCTCCCTTGTCAAATC
GTTCATTGAACCTACGCCACAAGACATTTTAGATCAAGCCAATAAAGCTA
TCGCTGAGTTGACCAAAGAGGTTAACAGTAGATTGGATGAAATGAAAGGG
TATGTCGAAGAAAAAACCCTCGAATTGGAAAAAGATTTGGTGAACCGTGA
ATACAAGTCTTTATTCAAACTATGGGCAAACTGTGTAAAAGAAGTCACAA
AAGAAAAGGTTAATGAATGCATGGAGGATGCAGCAAAACAGATCATGGCT
TCTCGTCCCAAATTCGCCATCTTTGGTGACGATGTCCAACAAGATCACCA
ACCTTCCATTTCTAATGTGAAACGTATCGAAGCTAACCTCATCACCTTCC
GAGATTACGTCATCATGAGCCTTGCTAGTTTATCAACATTGGTGGCTACT
TTCAAAGATGATCCCGCAAAGAAAGGAGAGTACATCAGATATGCTAATGA
TCTTAATGAAGAAATCAAATGGTGTGCTAATTACGCACGGAACGCCGTCT
TTATCATCAAGAAGATGCATGCCGATTTTCGACATTGTGATGCAACAAAG
AAATGCACTGACTTTACTAAGTACCACGAAGGTTGGACGAATGTAAATAC
AATGAGTTGGTTAGTATGCAGTTGTGTCATCGATCCTGCTGATGTTTCCA
CACGTGCTTGTAAGGTCAAAATTGATATGCGCGTTGATGGAAAACGGGTG
TACACCAGGTACGATTTACCAACAGGCGACTACTTCTCNTTGCAATGCGC
GTTGATGGAAAACCGGTATACACCAGGTACGATTTACCAACAGCCGACTA
CTTCCGAGCAGCTAAGATGCTTGGACGACGAGAAGTCGAGAAACAAGTTG
GAAAATACATCACAGACATGTTGGCAACTATCAATAATTACTGGCAAAAT
GAGCTGCTGGATTTAATACCTGATTGGGAAAACCTTGAAATTGCATTGTC
AAAAGATGAAATCTCTTCTCGAGATGAGATTGAACAGCGAAGAAAGATTG
TGAGATACAGTCAAGATTTCAACCGACGTTTAGATCAGgtCAATGATGAG
ATGACTCAAGAATTGGATGCCGTCTACGCCGAAACATTCGAGCATCGTGA
CGAGATTCCACAAGACGAACAAactcgatcatttgaaaaatcattttata
atgATCCTATACCAGCAGAGCGTCGATCTTTCAAGGATTTTGTTCCTCGT
CGCTTCGCGATGCCATCTCGAGATTTTTTGCCCCGTCGTTCAATGTATGA
TTACGCAACAAGAGGTCGTTTATTAAAGGATTTCTACCAACAACGAACGC
AAACCTTCCGCAATGCTCAAGATGAAAGGAGATACAGAAACAGTCCACGA
AAATAAGATTTGGAAAGGCTCGAAGGATCACGGCTTAACTAATGTATCTT
GTAATTATTTGTTATAGGCAATTTGTAGGCTTTAAGTTAATTTGTATGTT
GGATATttgtaaattcatttttttataatcaacAGAG
Run BLAST on NCBI

transcript from alignment at sc0000119:234179..238254-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011036 ID=TCONS_00011036|Name=TCONS_00011036|organism=Clytia hemisphaerica|type=transcript|length=4076bp|location=Sequence derived from alignment at sc0000119:234179..238254- (Clytia hemisphaerica)
TAGGGTGTAGACAAATTAGAAGCATCCACCGCAAGAAACCGATAGCAACA
AGTTTTTCAAAAACAAGATAATTGCTAACATTAATAAATTATATTTTTTA
TGGGCGTGTACACGCTTGGGTAATCAACTATTTCATTGTTTGAAATTGAT
CTGTTTTTTAGCACGAGTAGTTTGATTTGGGATTTGAAGACGTTATGTCA
TTTCCCAAACTAATCTTTCAAATTCTTGTCAACAGTTTATGTTTGTTCAT
TCAAAATTAATTGTTTTGAGCTGAAGTACACAGATATTTTCACATATATA
ACCCTCTTCTGAAACCTTTGTCAAATACAGAATCTCTATGTATCTTGTTT
CGAGAAGTGAAAGAGCAAAACAAGGAGTGGCAGAATAGAAACATCAAATA
TATTGGTAAGTCCTTGAAACTGAGCTACTGTAGTATTGCTAAACCGAAAA
TCTTGTTACATATGTATTTATGAAAACCTTTACATTGACTTTTCGACGGC
TCTCCCTTATAATCTAATCTGAATTGTCATTTGCTGGAATAAAATAAATA
CACGTTTTTTTTTTATAAGAACGTCAAAAATTTTCGAAGCCTTCGGATGT
TCTTAGTTTTTTGGATTTGAAGCCTAAAAATGTTCTTAAAATGTTCTTAT
TTTCAGCATTTGAGCATTTTTTGAGCTTTTTGATGTAATTTCTTAAGAAA
CTGCATGTTTTTAAGTCTCCAAAGCCTTAGTATCTTCTTAGAATGTTCTT
AAATTTTTGGGCCTCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAA
AAAAAAAACGTGTATGGAAGCATGTTGAAAAGGAAATCTGAAACTGGAAA
TTAAATCTTTAACTTATTTTCAGCTTATCAAAGATGAAATCTCTTTTACT
CTATCTGTTACTTGCGGTCTTGGTTGGCAATGCAAACTCGAGGAGATTCT
ATGCTTCGATTAAAAAACCCCAAACATATTGCACATTCAGAGGATATGTT
CCCGGAGGCAATAAAATCACGGTGGCAAAGATCATTGCTCCTGTGGCGAA
AATGCAGAAGAATGTATTCAGTGGGCTTGCTGGCAATCTGGGAAAAGCAA
GTGCGGGTGCTCAACATACAACGATGTTATTGAAAGGTTTTGGAAAGCTA
GGTAAATTTTGAACATTTTCATTGATGTTTTTCTATTAGCCATAGTCCGT
ATAAAAAATCCCGGTCTGGAAGCCTTTTGTTTATTCCATCGTTTCTGACT
TGAACTTGCGTTGATAAATTACTTTGTTTTGCTCACTTTTTGATCATGTG
ATTAAATCTTAAGCCAATCCAAAGAGGAGTACTTGGTAACGCGATCAAAA
ACTGAGCAAATCGATTTTTGTTCTTTGATAATAACGAAAGAAAAAGCTAA
CAAAAAGTTAAAACAATAAGCTTCCAGACAAGTGTTTTTTATAAGGACTA
TGTTTTAACTTGCTCTTAATATTTATTCCGTAGAAGGCTCGTGTTTGTTT
TTTTGCCAAGGTTTTTGAAAAAAGCGCATTCTTGTCTACAAGACCCCCCC
AGTGGTTTGCGTTAATTTCGAAAAAACTGCGTGATTATGTGAATTCAGAG
TCTGCTGAGGGGCCTGCTACCACGACTCAACCTTTCAGTGTCGATTATTA
CTAATTGGATCACTTTCTGCCCAAATAAGATTTTCAGGGCCACATACCCT
GAAGTGCGTAGCACCTGTTCCATTTGCTTTGCTCTCACTGGGATCCCTTT
TTCATCGTGCTACGAAAAAATGTTACCCTTGTTATAAGTGAAAAGAAGAC
AAAACGAACAGCATATCTTAAAATTTCTTCCTTTCTTTCTGTAGCAAACA
TTGCGCCGAAGTTGGGTCCAGCTCTCGGTTTGTTTGGTGTTGGATTCTCC
CTTGTCAAATCGTTCATTGAACCTACGCCACAAGACATTTTAGATCAAGC
CAATAAAGCTATCGCTGAGTTGACCAAAGAGGTAAAGATTACAGTAAACT
CTCGCTTATTTGAACTTCTATTATTCGGATTTTTCTATAATTCGAATTTG
TTTCTAGTCCCTCATGAGTGAAGCCCTTTTAAAATCCTTCAACAATTCTA
ATAGGAATCAGAGAGTCTTCTTTATTACACTAACGTAAAGTAATGGGGTA
AACATTCCATTCAAAAAAATCGAAAATATTTCAACATTTTTAGAGAGGGA
TGGCAGGGATAGTTTTTATATGATTAATTAAAGCTGACAGTCTGCACATT
CTCGTCCTTCAAAGAACCTAGTGGCAACCCTTCGACCACAATTGTTCTGT
TTTTCAACTTCAGGTTAACAGTAGATTGGATGAAATGAAAGGGTATGTCG
AAGAAAAAACCCTCGAATTGGAAAAAGATTTGGTGAACCGTGAATACAAG
TCTTTATTCAAACTATGGGCAAACTGTGTAAAAGAAGTCACAAAAGAAAA
GGTTAATGAATGCATGGAGGATGCAGCAAAACAGATCATGGCTTCTCGTC
CCAAATTCGCCATCTTTGGTGACGATGTCCAACAAGATCACCAACCTTCC
ATTTCTAATGTGAAACGTATCGAAGCTAACCTCATCACCTTCCGAGATTA
CGTCATCATGAGCCTTGCTAGTTTATCAACATTGGTGGCTACTTTCAAAG
ATGATCCCGCAAAGAAAGGAGAGTACATCAGATATGCTAATGATCTTAAT
GAAGAAATCAAATGGTGTGCTAATTACGCACGGAACGCCGTCTTTATCAT
CAAGAAGATGCATGCCGATTTTCGACATTGTGATGCAACAAAGAAATGCA
CTGACTTTACTAAGTACCACGAAGGTTGGACGAATGTAAATACAATGAGT
TGGTTAGTATGCAGTTGTGTCATCGATCCTGCTGATGTTTCCACACGTGC
TTGTAAGGTCAAAATTGATATGCGCGTTGATGGAAAACGGGTGTACACCA
GGTACGATTTACCAACAGGCGACTACTTCTCNTTGCAATGCGCGTTGATG
GAAAACCGGTATACACCAGGTACGATTTACCAACAGCCGACTACTTCCGA
GCAGCTAAGATGCTTGGACGACGAGAAGTCGAGAAACAAGTTGGAAAATA
CATCACAGACATGTTGGCAACTATCAATAATTACTGGCAAAATGAGCTGC
TGGATTTAATACCTGATTGGGAAAACCTTGAAATTGCATTGTCAAAAGAT
GAAATCTCTTCTCGAGATGAGATTGAACAGCGAAGAAAGATTGTGAGATA
CAGTCAAGATTTCAACCGACGTTTAGATCAGGTATGAAAAATCGCCTGTG
AGAATTTTACAAGGGTCAAATATTTGAGAATTTTATTCCACAATTGCCAC
ATTTCAATTTCCATATTCTACATTGAGTTATCTGACAGATTGGCCAGTGT
ACGTGAACAGTGTACACATTNACATTGAGTTATCTGACAGATTGGCCAGT
GTCCACGAACAGTGTACAACATCTAAGTGCCAACCCTGCTCTGAAAAAAA
TCACGAAACCGTATGCTTTGCCTTAAAAATACAGAACAGAATGAATATAA
ATCATTTAATTACCTTGCGAATTTAAGTCCTTTAGATTGAGCAAATTCCA
TTTTATTTGACTTTTTCATTTTTTCAGGTCAATGATGAGATGACTCAAGA
ATTGGATGCCGTCTACGCCGAAACATTCGAGCATCGTGACGAGATTCCAC
AAGACGAACAAACTCGATCATTTGAAAAATCATTTTATAATGATCCTATA
CCAGCAGAGCGTCGATCTTTCAAGGATTTTGTTCCTCGTCGCTTCGCGAT
GCCATCTCGAGATTTTTTGCCCCGTCGTTCAATGTATGATTACGCAACAA
GAGGTCGTTTATTAAAGGATTTCTACCAACAACGAACGCAAACCTTCCGC
AATGCTCAAGATGAAAGGAGATACAGAAACAGTCCACGAAAATAAGATTT
GGAAAGGCTCGAAGGATCACGGCTTAACTAATGTATCTTGTAATTATTTG
TTATAGGCAATTTGTAGGCTTTAAGTTAATTTGTATGTTGGATATTTGTA
AATTCATTTTTTTATAATCAACAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006183XLOC_006183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011036-exon-sc0000119-1575043694:237850..238254TCONS_00011036-exon-sc0000119-1575043694:237850..238254Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1575043694:237104..237381TCONS_00011036-exon-sc0000119-1575043694:237104..237381Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1575043694:236274..236410TCONS_00011036-exon-sc0000119-1575043694:236274..236410Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1575043694:234974..235941TCONS_00011036-exon-sc0000119-1575043694:234974..235941Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1575043694:234179..234627TCONS_00011036-exon-sc0000119-1575043694:234179..234627Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1510915933:237850..238254TCONS_00011036-exon-sc0000119-1510915933:237850..238254Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1510915933:237104..237381TCONS_00011036-exon-sc0000119-1510915933:237104..237381Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1510915933:236274..236410TCONS_00011036-exon-sc0000119-1510915933:236274..236410Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1510915933:234974..235941TCONS_00011036-exon-sc0000119-1510915933:234974..235941Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1510915933:234179..234627TCONS_00011036-exon-sc0000119-1510915933:234179..234627Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1491911889:237850..238254TCONS_00011036-exon-sc0000119-1491911889:237850..238254Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1491911889:237104..237381TCONS_00011036-exon-sc0000119-1491911889:237104..237381Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1491911889:236274..236410TCONS_00011036-exon-sc0000119-1491911889:236274..236410Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1491911889:234974..235941TCONS_00011036-exon-sc0000119-1491911889:234974..235941Clytia hemisphaericaexon
TCONS_00011036-exon-sc0000119-1491911889:234179..234627TCONS_00011036-exon-sc0000119-1491911889:234179..234627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:234179..238254 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
519.891	504.386	622.326	596.785	2197.5	1789.53	1762.52	1716.43	1390.95	1404.08	1102.55	1042.88	0.319084	0.123545	0	0	4.17191	6.76041	4.08295	0.203666	9.22309	9.01698	127.124	106.013	1.35853	0.573299	4.92499	8.05359	55.5022	67.8631
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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