TCONS_00011029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011029
Unique NameTCONS_00011029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1998

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011029 ID=TCONS_00011029|Name=TCONS_00011029|organism=Clytia hemisphaerica|type=transcript|length=1998bp
CAGATATAGAATTTCCATCTTGCTTCGAGAAGTGAAAGAGCAAAACAAGG
AGTGGCAGAAACATCAAATATATTGCTTATCAGAGATGAAATCTCTTCTA
CTCTATCTGATACTTGCGGTCTTGGTCGGCCATGCAAACTCAAGCAGATT
TTATGCTGTGATCgaaaaaccccaaaaatatTGCACCTTCGAAGGATATG
TTCCCGGAGGCAATAAAATTACGGTGGCAAAGATCACTGCTCCTGTGGCG
AAAATGCAGAAGAATGTGTTTAGTGGGCTTGCTGgcaatctgggaaaagc
aagtGCGGGTGCTCAACATACAACGATGTTATTGAAAGGTTTTGGAAAGC
TAGCGAACATTGCGCCGAAGTTGGGTCCAGCTCTCGGTTTGTTTGGTGTT
GGATTCTCCCTTGTCAAATCGTTCATTGAACCCTCACCACAAGATATTTT
AGATCAAGCCAATAAAGCTATCGCTGAGTTGACCAACGAGGTTAACAGTA
GATTGGATGAAATGAAAGGGTATGTCGAAGAAAAAACCCTCGAATTGGAA
AAAGATTTGGTGAACCGTGAATACAAGTCTTTATTCAAACTATGGGCAAA
CTGTATAAAAGAAGccacaaaagaaaaagttaatgaatGCATGGAGGATG
CAACAAAACAGATCATGGCTTCTCGTCCCAAATTCGCCATCTTTGGTGAC
GATGTCCAAGCTGATCAACAACCTTCCATTTCTGATGTGAAACGTATTGA
AGCTAACCTCATCACCTTCCGAGATTACGTCATCATGAGTCTTGCTAGTT
TATCAACATTGGTGGCTACTTTCAAAGATGATCCCGCAAAGAAAGGAGAG
TACATCAGATATGCTAATGATCTTAATACCGAAATCAAATGGTGCGTTGA
TTACGCACGAAACGCCGTTTTCATCATCAAGAAGATGCATGCCGATCCTC
GTCATTGTGATGCAACAAAGAAATGCACTGACTTTACTAAATACTACGAA
GGCTGGCCGAGTGTAAATACAATGAGTTGGTTAGTATGCAGTTGTGTCAT
CGATCCTGCTGATGTTTCCACACATGCTTGCAAGGTCAAAATTGCAATGC
GCGTTGATGGAAAACATGTGTACACCAGGTACGATTTACCAACAGCTGAC
TACTTCCGAGCAGCTAAGATGCTAGGAGGACGAGAAGTCGAGAAACAAGC
TGGAAAATACATCACAGACATGTTGGCAACTATCAATAATTACTGGCAAA
ATGAGCTGCTGGATTTAATACCTGATTGGGAAAACCTTGAAATGGCATTA
TCAAAAGATGAAATCTCTTCCAGAGATGAGATTGAACAGCGAAGAAAGAT
TGTGATATACAGTCAAGATTTCAACCGACGTTTAGATCAGGTCAATGATG
AGATGGCTCAAGAATTGGATGCCGTCTACGCCGAAACATTCGAGCATCGT
GACGAGATTCCACAAGACGAACAAACTCGATCATTCGAAACATCATTTTA
CAATGATCCTATACCAGCAAAACGTCGATCCTTCAATGATTTTGCTCCCC
GTCGCTTCGCGATGCCATCTCGAGACTTTGTCCCCCGTCGCNTCAATGAT
TTTGCTCCCCGTCGCTTCGCGATGCCATCTCGAGACTTTGTCTCCCGTCG
CTCAATGTATGATTACGCAACAAAaggtcatcttttaaaagatttctacC
AACAACGAACGCAAAACTTCCGCAATGCTCAAGATGAAAGGAGATACAGA
AACAGTCCACGAAAATAAGATTTGGAAAGGCTCGAAGAATCACCGCTTGA
ATAATGTATCTTGTAATTATTCATTATAGGcactttgtaggttttaagtt
gatttgttgaatatttgtaaattcatttttttataatcaacAGAGTGAAA
AAGAtaatctttttaaatatttcctcgtTGTTAGTATGAAGACCGATTTC
CCTACTTGTCCTATGATATTTCCACTGAATCAACACAGAAGATTGAGA
Run BLAST on NCBI

transcript from alignment at sc0000119:225351..229068-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011029 ID=TCONS_00011029|Name=TCONS_00011029|organism=Clytia hemisphaerica|type=transcript|length=3718bp|location=Sequence derived from alignment at sc0000119:225351..229068- (Clytia hemisphaerica)
CAGATATAGAATTTCCATCTTGCTTCGAGAAGTGAAAGAGCAAAACAAGG
AGTGGCAGAAACATCAAATATATTGGTAAGTCCTTGAAACTGAGCTACTG
TAGTATTGCTTGAATGAAAACTTGACTTTGTTACATGTGTATACGAATAA
TATTATTGACTTTTCGACGGCTCTCCCTTATAATCTAATCTGAATTGTCA
TTTGCTGGAATAAAATCAATATAGAAGCATGTTGAAAAGGAAATCTGAAA
CTGGAAATTAAATCTTTAAACTTATTTTCAGCTTATCAGAGATGAAATCT
CTTCTACTCTATCTGATACTTGCGGTCTTGGTCGGCCATGCAAACTCAAG
CAGATTTTATGCTGTGATCGAAAAACCCCAAAAATATTGCACCTTCGAAG
GATATGTTCCCGGAGGCAATAAAATTACGGTGGCAAAGATCACTGCTCCT
GTGGCGAAAATGCAGAAGAATGTGTTTAGTGGGCTTGCTGGCAATCTGGG
AAAAGCAAGTGCGGGTGCTCAACATACAACGATGTTATTGAAAGGTTTTG
GAAAGCTAGGTAAATTTTGAACATTTTCATTGATATTTTAGTCTTTAACT
TTCTCTCAATATTTATGCCGTAGAAGGCTCGTGTTTTTTCTTTTTGCCAA
GGTTTTTTAAAAAAGCGCATTCTTGTCTACAAGGCCCCCAACGGTTTGCG
TGAATGCGTGAATGCGTGAATTTCGAGAAAACTGCGTGATTGTGTGAATT
GAGGGTCTGCTGAGGGGCCTCCTACAACGACTCAACCTTTCAGTGTCGAT
TATTGCTAAGTGAACCACTTTCTGCCCAAATAAGATTTTCAGGGCCATAT
ACCTTGCACCTGTTTCATCTGCCTTACTCTCACTGGGATCCATTTTTCAT
CGTGCTATGAAAAAAATGTTAGCCTGGTATAAAAGTGTAAAGAAGACAAA
ACGAACAGCGTATCTTAAAATTTCTTTCTTTCCAATCGTTCTTTCTGTAG
CGAACATTGCGCCGAAGTTGGGTCCAGCTCTCGGTTTGTTTGGTGTTGGA
TTCTCCCTTGTCAAATCGTTCATTGAACCCTCACCACAAGATATTTTAGA
TCAAGCCAATAAAGCTATCGCTGAGTTGACCAACGAGGTAAAGTTTGCAG
TAAACTCTCGCTTATTCGAACTTCTATTATTCGAATTATTTTCTATAATT
CGAATATGTTTCTAGTCCCCTACAAATAGAATCCCTTTTAAAATCATTCA
ACAATTCTAATCACCGTTCGAGTAGGAATCAGAGTTCGCGTTCTTCTTTA
ACGTAAAGTAAGGGGGGCAACATTCCATTTAAAAAAATCTAAGATATTTC
GACATTTTTTAGAGAGGGAGGGCAGGCGACTGTTTTTTATATGATTAGTT
AAAATTTGACTTCGTTAGAAAAATGAATGATAGAGAAAAAGCTGGCATTA
ATGGAAGAAAAGCAGTGGTATTTATTTGTATCTCTGTTCGACTTAGACGC
TTTGAAAATATCAAGATGGCCAATACTCTCCCTAGTCTAGATGATATTTC
TTAAACATTTTTGACTTTCGGCCGTTGAACTTTGATCGAGCGCGCGATGG
AATCCTCAGTTTTTGTACTATTATGATATGGAGTAGGAAATCTTTCGAAA
AAAGTCTTTTTAAAGCTCTCTTTCCACCGAGTCTGTCTTTTCTCATTTTT
AAACCAAAATTTAGTACTTCTAGGGGTAAGGTTCTGGGGTCCGGTCGGCA
CATTCCCGTCCTTCAAAAAACCTAGTGGCAACCCTGTTCTGTTATTCAAC
TTCAGGTTAACAGTAGATTGGATGAAATGAAAGGGTATGTCGAAGAAAAA
ACCCTCGAATTGGAAAAAGATTTGGTGAACCGTGAATACAAGTCTTTATT
CAAACTATGGGCAAACTGTATAAAAGAAGCCACAAAAGAAAAAGTTAATG
AATGCATGGAGGATGCAACAAAACAGATCATGGCTTCTCGTCCCAAATTC
GCCATCTTTGGTGACGATGTCCAAGCTGATCAACAACCTTCCATTTCTGA
TGTGAAACGTATTGAAGCTAACCTCATCACCTTCCGAGATTACGTCATCA
TGAGTCTTGCTAGTTTATCAACATTGGTGGCTACTTTCAAAGATGATCCC
GCAAAGAAAGGAGAGTACATCAGATATGCTAATGATCTTAATACCGAAAT
CAAATGGTGCGTTGATTACGCACGAAACGCCGTTTTCATCATCAAGAAGA
TGCATGCCGATCCTCGTCATTGTGATGCAACAAAGAAATGCACTGACTTT
ACTAAATACTACGAAGGCTGGCCGAGTGTAAATACAATGAGTTGGTTAGT
ATGCAGTTGTGTCATCGATCCTGCTGATGTTTCCACACATGCTTGCAAGG
TCAAAATTGCAATGCGCGTTGATGGAAAACATGTGTACACCAGGTACGAT
TTACCAACAGCTGACTACTTCCGAGCAGCTAAGATGCTAGGAGGACGAGA
AGTCGAGAAACAAGCTGGAAAATACATCACAGACATGTTGGCAACTATCA
ATAATTACTGGCAAAATGAGCTGCTGGATTTAATACCTGATTGGGAAAAC
CTTGAAATGGCATTATCAAAAGATGAAATCTCTTCCAGAGATGAGATTGA
ACAGCGAAGAAAGATTGTGATATACAGTCAAGATTTCAACCGACGTTTAG
ATCAGGTAAGAAATAAAATCGCCTGTAAGAATTTTGCGAGGGTCAAATAT
TTATGCATTTTATTCCATGATTACCACATTTCAATTTCCATATTCTACAT
GGAGTTATCTGACAGATTAGCCAGTGTACGTGAACAGTGTACACTTAAGT
GTCAACCCTGCTCTGAAAAAATCACGGAACCGAAGTGCTTTGCCTTAAAA
AAATGCAGAACAGAATTTATATAAATCATTTAATTACCTTGCAAATTCAA
GACCTGTAGATTGAGCNGGACATGCATTAAGTTACCCGAGAAATCTTGAA
ACTGAAGTGCTTTGTCTTAACAAATACAGAACAGAATATATATATAGGTC
ATTTAAGACCTTTAGATTGAGCAAATAAATTCCATTTTATTTGACTTTTG
ATTTTCTCAGGTCAATGATGAGATGGCTCAAGAATTGGATGCCGTCTACG
CCGAAACATTCGAGCATCGTGACGAGATTCCACAAGACGAACAAACTCGA
TCATTCGAAACATCATTTTACAATGATCCTATACCAGCAAAACGTCGATC
CTTCAATGATTTTGCTCCCCGTCGCTTCGCGATGCCATCTCGAGACTTTG
TCCCCCGTCGCNTCAATGATTTTGCTCCCCGTCGCTTCGCGATGCCATCT
CGAGACTTTGTCTCCCGTCGCTCAATGTATGATTACGCAACAAAAGGTCA
TCTTTTAAAAGATTTCTACCAACAACGAACGCAAAACTTCCGCAATGCTC
AAGATGAAAGGAGATACAGAAACAGTCCACGAAAATAAGATTTGGAAAGG
CTCGAAGAATCACCGCTTGAATAATGTATCTTGTAATTATTCATTATAGG
CACTTTGTAGGTTTTAAGTTGATTTGTTGAATATTTGTAAATTCATTTTT
TTATAATCAACAGAGTGAAAAAGATAATCTTTTTAAATATTTCCTCGTTG
TTAGTATGAAGACCGATTTCCCTACTTGTCCTATGATATTTCCACTGAAT
CAACACAGAAGATTGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006183XLOC_006183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011029-exon-sc0000119-1575043694:228994..229068TCONS_00011029-exon-sc0000119-1575043694:228994..229068Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1575043694:228510..228787TCONS_00011029-exon-sc0000119-1575043694:228510..228787Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1575043694:227932..228068TCONS_00011029-exon-sc0000119-1575043694:227932..228068Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1575043694:226364..227263TCONS_00011029-exon-sc0000119-1575043694:226364..227263Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1575043694:225351..225958TCONS_00011029-exon-sc0000119-1575043694:225351..225958Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1510915933:228994..229068TCONS_00011029-exon-sc0000119-1510915933:228994..229068Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1510915933:228510..228787TCONS_00011029-exon-sc0000119-1510915933:228510..228787Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1510915933:227932..228068TCONS_00011029-exon-sc0000119-1510915933:227932..228068Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1510915933:226364..227263TCONS_00011029-exon-sc0000119-1510915933:226364..227263Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1510915933:225351..225958TCONS_00011029-exon-sc0000119-1510915933:225351..225958Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1491911889:228994..229068TCONS_00011029-exon-sc0000119-1491911889:228994..229068Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1491911889:228510..228787TCONS_00011029-exon-sc0000119-1491911889:228510..228787Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1491911889:227932..228068TCONS_00011029-exon-sc0000119-1491911889:227932..228068Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1491911889:226364..227263TCONS_00011029-exon-sc0000119-1491911889:226364..227263Clytia hemisphaericaexon
TCONS_00011029-exon-sc0000119-1491911889:225351..225958TCONS_00011029-exon-sc0000119-1491911889:225351..225958Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:225351..229068 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2250.1	2344.68	2524.93	2342.76	546.304	425.247	483.63	368.036	560.07	667.846	485.165	410.468	0	0.11803	0	0	209.821	328.348	2.19862	0.164266	262.231	235.71	793.083	517.391	8.16508	5.78169	38.2966	46.8386	373.407	405.438
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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