|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011026 ID=TCONS_00011026|Name=TCONS_00011026|organism=Clytia hemisphaerica|type=transcript|length=1186bp
GTTTTTGGAGTCTCCATTATTGATTCCAAACCCAAATTTGATTTCCTGTC
ACGGGGGTTAAAATATAACGTTAAAGCTTAAGAGTTTGGTGAAAGATACC
CCCGTCTGTTGAGGTAGTAGTTTTGACAGGTTACAGTATAAGGGTTAATA
AGTTTGTTGGTTTTGTCTGTTAAGTTCGAAGTTGGGTGTAGCACTCAAGA
GAGTTAGAAAGGTTTGAACGGAAGTGAGAAACTTTGTGTTGCAAAATGCC
AGAGAAGAAGGATCCCAAGAAGAAGGAAGCCAAACCAAAGGCTGTAGAGG
CGCCAAAAGAAGAGGCACCAAAAGAAGCGGCTCCACCACCACCAGCTGAA
ACACAACAAATCTCATTGACTGATGAACAATTGGAAGAATTGAGGGATGC
CTTCACTCTCTTTGACAAAGTTGGAGACGACAAAGTGTGTCATTCACAAA
TTATTGATATTTTACGATCACTCAAACTCAACCCTCTTACTTGTGACGTC
GAAAAAGTCATCAAAGATTCTGGCTTAGAAGGAGTTCGTGTCGACTTCCC
AACTTTCGCTAGCATTTACGAGCAATTCAAGAAACGCAAGACTCTTGCAA
ACTATGATGATATGATTGAAATGTTCAAATGTTTTGATCGTGAAGGAACA
AAAATGGTTTTTGGAGGTGAATTTCGAATGGTTTTGGTCAATATGGGAGA
TACTATGAATGATGAACAACTTGAGAAAATGATCGCACCCAGTGAAAATG
CTGATGGATATATCCCTTACGAATCACTATTGGAGTTTGTGTTATCCAAA
TAAATGGAAAACACTTTATAAACCCTGTTATTTACACCAATACAACAATC
TTTTTCCATTTATACTATCGCATAGATAGTTCATAAATATTATTGAGGTG
GATTTTTTTGTGGGAAGCGAGTTACTCCCACTAAAGTTGGAACATGAAGC
CAGATGCTGAAGTTTCAAGCTCAAAGTCAAgatttataaatatttcaatg
tttttatatattttgtagACTATTTTTCTCTGATTATAATTATTAGCAAT
GCAAATACTTTTAGTCGGTTCAAAAATAAGggtgtattttttatttattc
aaaaaaactttcagagaaAAAGAACGGGGTCATATTTTCCGCCTACGCAG
ACAAAAAAGAACAAGGGCATGTTTCCGCCTGAAAAC Run BLAST on NCBI protein sequence of TCONS_00011026-protein >TCONS_00011026-protein ID=TCONS_00011026-protein|Name=TCONS_00011026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MPEKKDPKKKEAKPKAVEAPKEEAPKEAAPPPPAETQQISLTDEQLEELR
DAFTLFDKVGDDKVCHSQIIDILRSLKLNPLTCDVEKVIKDSGLEGVRVD
FPTFASIYEQFKKRKTLANYDDMIEMFKCFDREGTKMVFGGEFRMVLVNM
GDTMNDEQLEKMIAPSENADGYIPYESLLEFVLSK Run BLAST on NCBI transcript from alignment at sc0000119:201328..203062- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011026 ID=TCONS_00011026|Name=TCONS_00011026|organism=Clytia hemisphaerica|type=transcript|length=1735bp|location=Sequence derived from alignment at sc0000119:201328..203062- (Clytia hemisphaerica)
GTTTTTGGAGTCTCCATTATTGATTCCAAACCCAAATTTGATTTCCTGTC
ACGGGGGTTAAAATATAACGTTAAAGCTTAAGAGTTTGGTGAAAGATACC
CCCGTCTGTTGAGGTAGTAGTTTTGACAGGTTACAGTATAAGGGTTAATA
AGTTTGTTGGTTTTGTCTGTTAAGTTCGAAGTTGGGTGTAGCACTCAAGA
GAGTTAGAAAGGTTTGAACGGAAGTGAGAAACTTTGTGTTGCAAAATGCC
AGAGAAGAAGGATCCCAAGAAGAAGGAAGCCAAACCAAAGGCTGTAGAGG
CGCCAAAAGAAGAGGCACCAAAAGAAGCGGCTCCACCACCACCAGCTGAA
ACACAACAAATCTCATTGACTGATGAACAATTGGAAGAATTGAGGGTCAG
TATTTTTGATTTTTTTAAACGTGATGAGTAATGGGTCTTTAAAGCTACGT
TTTCTTCCTGGGGGAAACACTTACGGGACGTACCGCTGGTCAGGGTCCCT
TTTTTAGGCTCTGAAGATATCTGACAGAAATTCATTAAGTTTCAAGATGA
GTATCTGACAGGGTCGACTTTTAGTTATTTTACACAATTCTCAGGGTGAA
AATAAGAAAATTTTTCATTCTCAAAGGGTTCCAAATTTATCAAATATTCG
TATCTGACACTCGATCTTGATAATGGACAATAGATCTGATTTGAAGTGAA
GGGAAGGGAGATGAATCATTTCAGGACCTGGTTTCGAAACCAGATATTGA
TAAAGATTTTGGTACAAGCCCCACGCTGTCTGATGAGCATAGCCAAAACT
ATTGTGAGAACGTGAGATGAATTCCAGCTTTGAAATTTATGTCTTAAATA
TGAATCTCTCCTTTTAACAAAGGAGCAAGTTTTCTTGAACCCCTGCTGGT
AAGTTAAGAGAAAGAATGAACTGTTAAACATATTTTCGTTATAGGATGCC
TTCACTCTCTTTGACAAAGTTGGAGACGACAAAGTGTGTCATTCACAAAT
TATTGATATTTTACGATCACTCAAACTCAACCCTCTTACTTGTGACGTCG
AAAAAGTCATCAAAGATTCTGGCTTAGAAGGAGTTCGTGTCGACTTCCCA
ACTTTCGCTAGCATTTACGAGCAATTCAAGAAACGCAAGACTCTTGCAAA
CTATGATGATATGATTGAAATGTTCAAATGTTTTGATCGTGAAGGAACAA
AAATGGTTTTTGGAGGTGAATTTCGAATGGTTTTGGTCAATATGGGAGAT
ACTATGAATGATGAACAACTTGAGAAAATGATCGCACCCAGTGAAAATGC
TGATGGATATATCCCTTACGAATCACTATTGGAGTTTGTGTTATCCAAAT
AAATGGAAAACACTTTATAAACCCTGTTATTTACACCAATACAACAATCT
TTTTCCATTTATACTATCGCATAGATAGTTCATAAATATTATTGAGGTGG
ATTTTTTTGTGGGAAGCGAGTTACTCCCACTAAAGTTGGAACATGAAGCC
AGATGCTGAAGTTTCAAGCTCAAAGTCAAGATTTATAAATATTTCAATGT
TTTTATATATTTTGTAGACTATTTTTCTCTGATTATAATTATTAGCAATG
CAAATACTTTTAGTCGGTTCAAAAATAAGGGTGTATTTTTTATTTATTCA
AAAAAACTTTCAGAGAAAAAGAACGGGGTCATATTTTCCGCCTACGCAGA
CAAAAAAGAACAAGGGCATGTTTCCGCCTGAAAAC Coding sequence (CDS) from alignment at sc0000119:201328..203062- >TCONS_00011026 ID=TCONS_00011026|Name=TCONS_00011026|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at sc0000119:201328..203062- (Clytia hemisphaerica)
GATGCCTTCACTCTCTTTGACAAAGTTGGAGACGACAAAGTGTGTCATTC
ACAAATTATTGATATTTTACGATCACTCAAACTCAACCCTCTTACTTGTG
ACGTCGAAAAAGTCATCAAAGATTCTGGCTTAGAAGGAGTTCGTGTCGAC
TTCCCAACTTTCGCTAGCATTTACGAGCAATTCAAGAAACGCAAGACTCT
TGCAAACTATGATGATATGATTGAAATGTTCAAATGTTTTGATCGTGAAG
GAACAAAAATGGTTTTTGGAGGTGAATTTCGAATGGTTTTGGTCAATATG
GGAGATACTATGAATGATGAACAACTTGAGAAAATGATCGCACCCAGTGA
AAATGCTGATGGATATATCCCTTACGAATCACTATTGGAGTTTGTGTTAT
CCAAATAAATGCCAGAGAAGAAGGATCCCAAGAAGAAGGAAGCCAAACCA
AAGGCTGTAGAGGCGCCAAAAGAAGAGGCACCAAAAGAAGCGGCTCCACC
ACCACCAGCTGAAACACAACAAATCTCATTGACTGATGAACAATTGGAAG
AATTGAGGGATGCCTTCACTCTCTTTGACAAAGTTGGAGACGACAAAGTG
TGTCATTCACAAATTATTGATATTTTACGATCACTCAAACTCAACCCTCT
TACTTGTGACGTCGAAAAAGTCATCAAAGATTCTGGCTTAGAAGGAGTTC
GTGTCGACTTCCCAACTTTCGCTAGCATTTACGAGCAATTCAAGAAACGC
AAGACTCTTGCAAACTATGATGATATGATTGAAATGTTCAAATGTTTTGA
TCGTGAAGGAACAAAAATGGTTTTTGGAGGTGAATTTCGAATGGTTTTGG
TCAATATGGGAGATACTATGAATGATGAACAACTTGAGAAAATGATCGCA
CCCAGTGAAAATGCTGATGGATATATCCCTTACGAATCACTATTGGAGTT
TGTGTTATCCAAATAAATGCCAGAGAAGAAGGATCCCAAGAAGAAGGAAG
CCAAACCAAAGGCTGTAGAGGCGCCAAAAGAAGAGGCACCAAAAGAAGCG
GCTCCACCACCACCAGCTGAAACACAACAAATCTCATTGACTGATGAACA
ATTGGAAGAATTGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011026-exon-sc0000119-1575043694:202668..203062 | TCONS_00011026-exon-sc0000119-1575043694:202668..203062 | Clytia hemisphaerica | exon |
| TCONS_00011026-exon-sc0000119-1575043694:201328..202118 | TCONS_00011026-exon-sc0000119-1575043694:201328..202118 | Clytia hemisphaerica | exon |
| TCONS_00011026-exon-sc0000119-1510915933:202668..203062 | TCONS_00011026-exon-sc0000119-1510915933:202668..203062 | Clytia hemisphaerica | exon |
| TCONS_00011026-exon-sc0000119-1510915933:201328..202118 | TCONS_00011026-exon-sc0000119-1510915933:201328..202118 | Clytia hemisphaerica | exon |
| TCONS_00011026-exon-sc0000119-1491911889:202668..203062 | TCONS_00011026-exon-sc0000119-1491911889:202668..203062 | Clytia hemisphaerica | exon |
| TCONS_00011026-exon-sc0000119-1491911889:201328..202118 | TCONS_00011026-exon-sc0000119-1491911889:201328..202118 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000119 | supercontig | sc0000119:201328..203062 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00011026 vs. Swiss-Prot (Human)
Match: MYL6B (Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 3.629e-31 Identity = 60/149 (40.27%), Postives = 92/149 (61.74%), Query Frame = 3
Query: 360 ISLTDEQLEELRDAFTLFDKVGDDKVCHSQIIDILRSLKLNPLTCDVEKVI---KDSGLEGVRVDFPTFASIYEQFKKRKTLANYDDMIEMFKCFDREGTKMVFGGEFRMVLVNMGDTMNDEQLEKMIAPSENADGYIPYESLLEFVLS 797
I +QLEE ++AF LFD+VGD K+ +SQ D++R+L NP +V KV+ K L+ RVDF TF + + K + Y+D +E F+ FD+EG V G E R VL +G+ M +E++E ++A E+++G I YE+ L+ +LS
Sbjct: 59 IEFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHILS 207
The following BLAST results are available for this feature:
|
