TCONS_00011025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011025
Unique NameTCONS_00011025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2123

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011025 ID=TCONS_00011025|Name=TCONS_00011025|organism=Clytia hemisphaerica|type=transcript|length=2123bp
ACTCATGGAGTTGCTATTGTAAAATTATTGTTGATGGAATATCTTTACTC
TGTTGTATATGAATCAAGAAGGAATGTTCAGTAGAAAAACACAAACCTCG
ATACCGAAAACGTGCTGCAGAataaattttcaagtttcaagtcTACCATC
TTTGAGCGGGAAAATTGACTCGCTTCTCAGTtctcttttttctaaatttg
atgGAATTTGCTCAAGGCCAGCGAGTCAAAACTTAGAACCCAGCAGCGGC
GTTCTAGGGCCGAAGTGCCGACCAAAAGGGTTATGATCTGCAAAATTGCC
CTCCATTTTCGGGTCATTTCAAGTTGCTGGACAAGATGGCGGCTGCAGCA
AGAACTTCAATGCTCAGAAGTCTTCAAACAGTTCGTCAATTCAGCTCTTC
CTCTGCCTCTCTCCAAGAAGCTGAAaagGCTGCCATCAAAGTTTTTGGTG
TTGAAGGAAGATACGCCCATGCTTTATTTTCTGCTGCCAGTCGAACAAAA
GCTCTAGACAAAGTTGAAGGGGAATTAAACAAAGTCCAAGGACTGttaca
aaataatgaaaaacttTCTGCTTATTGCAAGGATCCCACTGTAAATAAAA
ATGACAAACAAGATGTTATCGTTCAGGTATTAAAGGACAACAAATTTTCA
GACTTGACCGTCAACTTCATGGGTGTTCTGGCTGAAGGAAATCGTTTGAA
ACGTGTGGATGGAGTGATCAGTTCATTCAATAAAATTATGAGAGCTCGAC
GTGGTGAGGTTGATTGCACAGTCACCACTGCCAAAgaATTGGACAAAGCC
ACCATGAAAACTTTGACGGGCACCTTGAACAAATTTGTCAAGTCAAACGA
AACTTTGAAAATAGACACCaagGTTGACAAAGAACTGATTGGTGGAATGG
TCATCAACCTTGGTGATTACTTCATTGATATGTCAACTGCTACTAAAATC
AAGAAATTATCACGTGCACTCAAAGGAGAAGAATAAATAAGACGttgtta
tttttatcatttatgTATAAATTTTCAATTCGTGAACTTTTGAAAAGTAT
AAAATAGGTTACATAAAAATGCNACAatatacagcacctgaccccaagaa
tgtaggtgaaatttgaatcagacctgaaagatgtagatttgaatttttaa
aaacaatgaatgttttcaatgaaattttgaacctcCANCTTTTTTCTGGG
ATACAATACAAGAGGGATCAGTCAagatgaatttttcttcttgttgGGAA
GAAGTCAGGGACAATAATTGAAAGGCTCGCTTTCATTAAAGATCTTGGCA
actaaactttttttaatttaaaactcTTTTCAATGTCCTACTCTATTTGA
GATACTGTACACGATTGCATTCattgatcatttgaaaaaatacaacATTC
TTGTACAATcttgtaagggtgtactttgtAGCATGGCAGAATTTATCCCG
AAATTTCTGTTTTGATGAACGATCTGGCGATATACCAGAAAAAAACTTCA
ACTTTCAATATTCAATGGCGATCTCTATTGGAAGTTCTCCTTTGAGGTGT
ACCACCAGCTGACGAAAGGTTTGCGTTGGATGCTTTCGGTCTTTGGTTTT
GTGTACGTGAATCGTTACGTCCACCTTTGTTCTTCAAAACAGCCGTTCTG
TTGAATACGTCACGTGATTCTTTGTTGTAAGCGTCAGGGTTCACTTTACG
NGcaaatgaggaaaagtaaaagaaaggaagaaaagaagagacaagaaagt
tgtttttattttgtaggttgaaaatgttttgttaaaatatgtgaataatg
taactaCACCATTGCCTCATAGCTCCGTTGGAACTTTTCCCACAACGGGG
ACAATGATTTCTACTAAAGTCCCAAtgtggatagaaattctattgttcca
aacttaggcaagTTTTCTAATTGGGgcggggtcccagcgggtctgggNAA
TTATTTAGGCATAAAAACTTTCACATCTTTAGTCTTCTTTCGCTGAgtag
atgaaaatttttaataagaCAACTCGCGAAGGTTTATGCAAAAAATTCGT
TTCGATAAAACAATAATCTGAATTGCATGCCTCTACAAAACTGCAGGAAA
TTCGTCTGTAAATGCCAGTCTAA
Run BLAST on NCBI

protein sequence of TCONS_00011025-protein

>TCONS_00011025-protein ID=TCONS_00011025-protein|Name=TCONS_00011025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MAAAARTSMLRSLQTVRQFSSSSASLQEAEKAAIKVFGVEGRYAHALFSA
ASRTKALDKVEGELNKVQGLLQNNEKLSAYCKDPTVNKNDKQDVIVQVLK
DNKFSDLTVNFMGVLAEGNRLKRVDGVISSFNKIMRARRGEVDCTVTTAK
ELDKATMKTLTGTLNKFVKSNETLKIDTKVDKELIGGMVINLGDYFIDMS
TATKIKKLSRALKGEE
Run BLAST on NCBI

transcript from alignment at sc0000119:178934..189566-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011025 ID=TCONS_00011025|Name=TCONS_00011025|organism=Clytia hemisphaerica|type=transcript|length=10633bp|location=Sequence derived from alignment at sc0000119:178934..189566- (Clytia hemisphaerica)
ACTCATGGAGTTGCTATTGTAAAATTATTGTTGATGGAATATCTTTACTC
TGTTGTATATGAATCAAGAAGGAATGTTCAGTAGAAAAACACAAACCTCG
ATACCGAAAACGTGCTGCAGAATAAATTTTCAAGTTTCAAGTCTACCATC
TTTGAGCGGGAAAATTGACTCGCTTCTCAGTTCTCTTTTTTCTAAATTTG
ATGGAATTTGCTCAAGGCCAGCGAGTCAAAACTTAGAACCCAGCAGCGGC
GTTCTAGGGCCGAAGTGCCGACCAAAAGGGTTATGATCTGCAAAATTGCC
CTCCATTTTCGGGTCATTTCAAGTTGCTGGACAAGATGGCGGCTGCAGCA
AGAACTTCAATGCTCAGAAGTCTTCAAACAGTATGTATTATCTTCGTTTT
CCTTCTTCTTTTTTAATTCGAAATTACACCTACAACCTTTACAAGGTTTT
CCTCATCAAATCTTTTCGCAATGTGTTCATGCAATTCAAGTTCTATCTGA
AATAGTAACACTTTTGAAAAGAGAGGGTTTTTAAACTGTTTTCCCTCCTG
CCAAAACTGACGAAGCTTCTGTGGCAGGCGGCTTCTGAGATTTACAGCCC
CTGACTTCTGTCTATTTTCATTCATAATAAGAAATAGCAGTGTGTAAAAA
TAGGCCCTCTAAACAAGAGTTTAAGGCTCAAAAACCAAATTTTGATATAA
AAAATACCAGTCTGGAATTCATACACAGTACGCCGAATATATTCGGCGTG
AGAATGCCCTCAATTGGGTGTAACCTTCTTGATCCTCAAAATATCTTCGG
TGTGGCTTTTGCATGGATTCCACACTGGAAAAAATGGGGCTGCTATAAGC
CAGGAGACCCGATCAATCAAACTTGTCGAACCAATCAAACAATCAAACTA
ATCAAACTCCATCGAACGATTAAAGTTCGATTAAAAGAATTAATCAAACC
TAATCGAACACTCACAATTTTTGAAGTAATAGGAGTTTGATTAGTTCGGT
CGAGTAAAAGTTCGATTAGCTCAATGATATTAAATCCTCATATCTTTCCT
CACTTGCAAAAACTTTATTGTGACAATTCAAAATGGCGGCCACGCCCAAT
TTAATTTGACCCCTGGTTTTTTCTTTCTTTTTCTAGCTAGTTCCCGCGTG
ATAGTGTAGACACAACTTTAATCCGGGGAAATGAAGTGTTTTCATTGGTC
TAAAATCACAGATGGTCACGTGACCAGAATTTTTATCCAGGGAAATGCCG
TGGCGGCAATGTTTTGCTTTAGTGAGTTTGGCCAGTTTTGTTGTTTCGAT
TTGAGCGGGCGAAATTTCTGTACAAACCAAAATATGGCTTCTTTGGAATA
CCAGTTGAAACACTTGTGCCTCTGTTGTTACAATTTCGCACGCGGTCGAA
TGGCGAAATACTACAAACCACCAGCCCCCAACAAACCACCTCTGGTGTTG
AAAGGATACAGGAAAAGTGTGTCATCCGTTATCGGAAATAATTTCCCGAT
TTACATTTTGAATTTGGCTTTGAATACGGATGGAGATAGAGGCACTAACT
TGTCAAACAAAATTGGTTACTGTAATCGAACTGATCAAACCGAACCACAA
CCCATTGATCGAATTTAATCGAACACTCACAATTTTTAAAAAAATTTAGA
GTTTGATTAATTTTTTTAATCGAACTTTAATCGTTCGAGGGAGTTCGATT
AGTTTGATTGTTCGATTGGTTCGGCAAGTGTTCGATTGATCGGGTTTGGT
ATAAGGGGTGGACTATTTCTGAGTTTGCAGAGTATGGCAAGGCTGCACCC
GAGAGGAAAAATTCAAAAATACCACGTTCCGCGCTGGATAGCGCACCTGA
TGAATTTTGGTCCGGTCAAGGCGAACCCATACCTCAGAAATTGGCCCAAA
ATGGTAAAAATTGCTAAAATTAGCTGCACTTGAGGAGAAAATAGCGGAAC
TCTGCACTTGAGGCTGAAAAACCGTCTGCACTTGCACCTGAAAACCTCAA
ATTTTGCACCTGCACTTGACTTTCTCCATGTTGTACACTCAAGATCTCGA
GCCAACGCACCACACTCTGCAAAAACTGCACCAAAAAACAGAATTTTAGC
ATATTATTACCAATTTTAAGCTAAAACAATGTCAATCCATAGTCTATACC
GTAAATTGGTCTAATATCGATCCCTCGTTTAATTCCGACACCCTTCTTTA
GAAAAATCAGGATTTTCATGTTGGTATCGATACCAATTTAGGGGGGTGTG
TCCCCCTTTTTTAGAAAATTTGGGTTTTCAAGTTGGTATTGATACTAATT
TAGGTTTTCAAGTATTGATACCAATTTAGGGGGTGGTGGTGTCTACAACT
TTCAAATCTTGAAAAGTCAGGTTTTTTGGCCCTGGGTTGGTATCCTGGAC
CCTGACCCCCCCCCTGCGTTATTTCTAAAATGAAGCACAACCGAGAAAAA
AACTAAGCTTCAAAAAGTTGCGTATTTCCAGTGAGTAAACAATTCTGACA
ATTAACGAAATTGATGAGGATGATTTTTTTTCGGTCAGGCAAATGTCTCG
TATTGGGGGTTCTAGTTTTGACCCCTAAGCCTACGCAAGATTGAAGCGTT
TGGGTAAACGAGACAAAACTCAAAAAAGCTGGTGTTTTGAAGCGCTTCTG
TGCAATCGAAATATCGCTCTTTGTGACGCACTGGCAATTCGGCCACAATT
TCACCAAACCTTCAAAGTCATTTGATTTGAGTTAATGAACAGTGTATTAA
AAAATACACAATTTCTCTTTCGCACCGAGTAGGCCAGAGTAGGCTTTTAA
ATCAAAATATGAAAAAANATTAAAAAATACACGATTTCTCTTTCGCACCG
AGTAGGCCAGAGTAGGCTTTTAAATCAAAATATGAAAAAAATCCGTAGTG
GAACACGCGTGAGTGTCTGTGCACTCTAAGAGGAACAAGAAGTATGACTG
ATGAACTTGGTGGAGTTATCAAAACAAATTTATTGTCAAAGATATTTCAC
AGTAAGTGAAAATACAGGCCAGATATCAACCAGTCCCATGTTTCGACCAA
TCGTCCCAAGTTAGAGCAGTTGACGGTACTTTTTGATTTTATACTTTATG
GTACTCATCCAATTCGTGGAATCCGATGATTGACCATTACTGATACACTG
TTGGAATCAGCTCTCCTGAAGTTGAAATAATTAGGAAGCAGTGGTTCGCC
TGGCAGTGTATTGAGGGATTGATGTTGTTTAAAAGTTTGTTTCGTACAAT
TTGTGAGGTTTTGAAGGGATTTTGGTAGAGCATTAAAAAGTCTTGGTCCT
TCCTGTGAGAGACAATCCCTCCAAATGTTTTTATGCTTAAATGCTTTATA
TTTGGGGGTAAAAGGAAGCAACAGAAAGGGCGTCATACTCCCTGCTGTGC
CAGATAGATAAAAGCTACTTCTTTACACAACGATATTCTTCAAGCAAAAG
AAGGATCGAGAGTTGTTTCGAGAGTTGTTTCAAGATGTGATCACACATTC
TATTGCTTCTGTAAACAAAAAAATAGTTGATCTCAAACTAATTTACAATC
GAATGTTTTGATCTAAATATAGAAAACATTCTATTTATTATATGCAAAAC
ATTAAAAGAATATCAATAAAGGCTCCTTTGCGTGAGAAATGTGTTTTATT
TTTAATTATTTTTAATTATTTTACAGGGATCGAATTAACGGCCGCATTTT
TCTTTCATAAGAACCAAATAGATAACAGATGAAACTTTCTTTTTAAAAAC
CTTTACTCGTGACTCATTCAAACTGTTACATCGTTCCTCCTATATAACAC
TCTTCAAAAAGCATGCTTTCTGGACGTCAAAGATCAAATAAATAGTGTTA
TGCATATTAAGGTTACAGATAGGGCTCCTTTGAAGAAAATCTTTTTTTTA
CATCAAAAAAAATTTTTTTGCTGTAAAAGATTCAAAATTTTACGGACCAT
CGAATGATGCATCTCCCTATAAACCTAAAAGTGTATCAAAATTGCAAAAA
ATGCTAAAAACATTATTGATGTATAATCCCTATTGATTGAGCCTTTTATT
TGAATTGTAAAAGAAAACTGTAAAGGGAAGTTTAAAGCGACGCTTCTTTC
GATATCCTTATTATAAAGTCTTACAATGGAATAATGGTCTTTTTACTTTT
CAATAAAAGAGGGGGGGATTTTTCGGTAAAGATAAAAAGATTTGAAATAT
CTCAATCACAATTTTTTCAAAAATCCAGTGTACATACCAACTTTGAAAGG
TTACTCTACAAGATCTGGTTGGTCGATATTTCTGAAACCTACGTCATTCT
ATTCAGAAAAGGTTGAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGAATACAAAAGGTTTCATTGAAAAATATTCAGTAGAT
TTTGAAGAGTAACTCGTCAAAGTTCAAAGTTCGTCTTTTGAAATCGCATC
ATAATTCCAAATTAGAAAAATATGTTGAAAAGTAATTACATATTTAGAAA
GCCATTGAATTGCACTTCAACCACTCCAGTCCAATTTCATCAAAGAAAGG
ATGCTAAACAATTAATGATACTTTTTAAAAATAATCAAATTGACCTATCT
GTAACCTTAAATCAATTTATTAGAATGAAGAGTTAGTTGATTCTTAGGAA
AAAAAATCACAAAGTACAGCTTTTTGTAATTAATAGCAACAAATTTCTTT
CAGTGAAAGAGAGAAAAAATATAAAGACAGAATGTGGGGCAACACTAACA
GCCAGAGAGATGATTTTTTTCTTCCTAATTTATTTTATTAAAAATCATGA
AAAACAAACACACTACAAACATAATGTTATAGTCCTTCCCCCTGCTAGGA
GCTATAAAGGTATTTTCGCTAGGCAAATATTTTAAGAAATAGTTTAATTT
TTGCGGGGTATACTATTGTATTATAAGAGGGGTGGATTGCTCAAAAGAAT
CTATATCTTTTTGCAAAAATCCCAAATTCCAAAAATTTTAAATTCCATAA
ACCTAATAAAATACAACTTAAAAACCCACGTAGACTCAAAATATTCTTTT
TTTATAGGTTCGTCAATTCAGCTCTTCCTCTGCCTCTCTCCAAGAAGCTG
AAAAGGTATATTTATTTTTTTCACTCACTAAATATTTTTTTTTTCAATGA
AAGAACTTTGTGTCTGAAGGGGCCACCAAATATTTTTGAAATACATTTTT
TGGTATCTTTTGGACTCCAAAGAGCAATAATATATCTATTATTCCTTTAG
AGCAGAGTCTGGTTGCAGATTGGAAGATCTGTTATATGAGATTAGTCTTC
AAAAATAGATCAAAATGGGCTTGCTAAATGTTTGAAAAAGCCAATTTTGA
TTTTTTTAATCTCATTCTTTCATTTGATTTTTTTCCTCAAAGGCAATGTT
TCAAATGTACAGACTGCCAATTCATTTTTCTTGGAAAGACCTTAAAAGTG
CTATTTTGCCTCATCATTATCATCAGTTTACTGTAGTGAAGTTTTAATTT
TCAACCCCCTAGTGAACTTTTGTTTTTATCTGACCTATGCCAATTACTAT
TTGACTATTTTAATTTTTGTTTTTGAAGAGATTTGAATTATTGTAAACCT
ATTTATGTTTCACCCTCTTAGGCTGCCATCAAAGTTTTTGGTGTTGAAGG
AAGATACGCCCATGCTTTATTTTCTGCTGCCAGTCGAACAAAAGCTCTAG
ACAAAGTTGAAGGGGAATTAAACAAAGTCCAAGGACTGTTACAAAATAAT
GAAAAACTTTCTGCTTATTGCAAGGATCCCACTGTAAATAAAAATGACAA
ACAAGGTATGCCACATGTTAAATCACTACTCTGTATTCATTGAATATATG
GCGAATTTCATTTATGCAGAATTATAGTTTGCTTCAAAACTTAGTAAAAA
TTTTAAACCTCTTTGAAAAAAGATCCGCTCAACTATAAGCGAATGTGGTA
AATCATATTTGTAAACCTGCTGTGGGCGCTGTGGGCTACTCTACCTGATT
AAACTTCTTGTCGCATTTCTCTTTTGTAGATGTTATCGTTCAGGTATTAA
AGGACAACAAATTTTCAGACTTGACCGTCAACTTCATGGGTAAATACTTT
TCTATATTTGAGCATGACTAATTGCAGTACCCAACCCAAGTACTCGTTTA
TCGTTAATTACCTTCACTTATCTCTTTCATTCTAAAACCTTTTGCTGACA
AAGAATATGAGAAATTTATGTTGTCTGCTGTTTTTTATCTCTTTTTTGAA
TGAAGGGAAAGTGTGTGATTTTGTAAATGTTATTTATTATTTTTCATGAT
CAGGTGTTCTGGCTGAAGGAAATCGTTTGAAACGTGTGGATGGAGTGATC
AGTTCATTCAATAAAATTATGAGAGCTCGACGTGGTGAGGTTGATTGCAC
AGTCACCACTGCCAAAGTAAGATATTATCTCTTACATTTGATGCGATGAT
AGATTATAAACAATCGCAGAGAGTGACATGAAAATTTTCTCCCCTGGCTT
CCCTTCGGAAATTCCCTCATCTAATTTTACCACATACTAGGTTTGACTTA
TATTAAAGAAAACATGCAAAAAAGCTTATGGTCTTCTGATCATTTTCATG
TCGAAGGATAACTCAATGGCAAGTTATTCTAACATATAGGAGAAATAAAT
TGCTTTCATAATACAGAACTTCAATTTTGGCGATATCTAGTAGGGCCTGC
TTCATCTAAAATTCATTTTTGGACCTACCCCGTCGGGGCGGAGGTCCTAT
AAATTAACCTTTGTCCATTCGTTGGTTCGTTCGTTAGTTACCAGCTTTTC
TCGAGATTGGCTCATAGAATCTTTTGATTTTTGGTACAAAGGTGCAAAAT
GGTTGTGGCTAAAATGTGACGGAGCCCGATTTTCGAAAAAAAAGATTTTG
GGGCAAATTTGGGCCAAAAAACGGCTAAAAAACAGGTTTTTTGGACTTTG
TGAAAAATCGGATCATTAATTTTTACTGATTTTTTGCATGAAAGTAGGGT
ACTATCATAGGTAAAAGATGGCTCAAGCAGATTTTTGCAAAAAATTTTAT
TTGGCTTAAAAACGCATGTTTATCTACAAGAATCACTATTAATAAGCATA
CATCAATGTTCTTAGTCAAATCACTCAAATTTTTTATGAGATAGATATTT
TTTTGCTCATGAGGGCTTACTTTTGATGTATATGTGTGTTTAGACATGAA
ATTTTGGTTGTTTGGCGTGTTTTTATAGAAAATTTGGCCAAATTCGATAT
TTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATT
GGCTCTTTCATTGTCTATGATTTTTTTCACAAAGATGCATAACTACCGGG
TGCGCCACAAAAAAGTTTCTCTCTTTGAAACTGATTTTCTCAAAATCTAA
AAACGTTAAAAGAAACCATCCTATTTTATTGGAAAGAAGAAAGATGAACT
TAAATTTTTATGGGTCATTTATTAAATTCGATTCATTAGATCAAAAGTTA
TACTCAATTGAATAAAAAAGTTACTTTCGGAAAGTGCTCAAAAACGTTAA
AAATCGACTTATCAAATTAAACAGAAGCATAATTACATGATACATCAGTT
TACTCGTTTCAGTCATTAAAAATGATAATAAGCTCTCTAAATGACCTTTT
GTTATATAAAGGAAGGTTGAATTTCAATGAAAAGAAGAAAATTCCTCGAA
AAAGAACAAAAAAATCTGATGAAATTCATAAAAATACATCAAATATGGGT
TTCGAGGTAGATCCAGCCTTACATAGACTTTATCCAGTCTAGAACCAAAA
AACTGAGGAAAATTTCGGTAAAAATAAATTAAATTGATTTCGATGAAGAT
TTAAAACCCTTTCGACCCTTCAATTTCAAAATTCATGTGTTAAGTTACTC
AAAAATTATCTTAAACATGTAAAGGCTATTGCGGTTGCCAAATTTAAACT
AAAAATTTGATAGGTCGATTTTTAACGTTTTCGAACACTTTCTGAAAGTA
ACTTTTTTATTCAATTGAGCATAACTTTTGATCTAATGAACCAAATTTTA
TAAATGACCCATCAAAATTTAAGTTTATCTTTCTTCTTTCCAATGAAAAA
AGATTGGTTATCTTTTAATTTTCAGACTTCGAGGAAATTCACTTTAAAGA
GAGAAACTTTTTTGCGGCGTACCCGGTATAAACCCTCGAATGTGACTTCG
CCCGATTTTCGAAAGAAAATATTTTTGGGCAAATTTGGGGCAAAAAACGG
CTAAAAAACGGGTTTTTTGGACTTTGTGAAATATTGGACCACTGTTTTTT
TTTTTTTTGATTTTTTTGCAAGAAAGTAGGTAAAAGATGGGTCAAGTAGA
TTTTTGTAAAAAAGAACTTTCCAGCTCAAAAAACGCATGTTTATCTATAA
GAATCACTATTAATAAGCAGATAAGCATATACATCAATGTTATTAGCCAA
CTTACTCAATTTTTTGATGAGATAGATGTTTTTTATGCTCACGAAGTCTT
GAATATGAAAGAATATTTCATAAGCATGAAATTTTGGTTTCTAAACGACT
AATTTTAATAAATCCTCACTATTTGTGTTCTGAATGATTGTTTAACGGAT
GAACGTAGATATCAATTATATACGTGTTAAATGCATAACCAGGTAGGTCC
ATAAAAGTATCACTTGTTTTTTTTTCATAGGAATTGGACAAAGCCACCAT
GAAAACTTTGACGGGCACCTTGAACAAATTTGTCAAGTCAAACGAAACTT
TGAAAATAGACACCAAGGTAATATTTTTTTTCTCGAAAAAATCTTTTAAA
TTTTTTTGTGTTGTAACGAAATTCTATCGAAAACTACTCTCGCCGATTTT
CGAAGTTGAACAAGGAATCTTATTTGTTCGAAATATAGAAAGATTTGAAT
AGTAGAAGTTCCAATAACCGAAAGTTTACTGTATCCAAAATGATATTAAG
CCAAATACCAGAGATGTTTCATCACTTCTATTTTATTTATAAAGAAACCA
CCTTCAGACCGAGGGTATGCCTGGATTTTTTTGATGAAAACAGTGTCTTT
ACTGGACGACCATTCTTTTTTTTTTTTGACCGATGAGGTGTGATACGTCA
AAAATAGTTAGTATTTGAATGTTTTGCTACAGGTTGACAAAGAACTGATT
GGTGGAATGGTCATCAACCTTGGTGATTACTTCATTGATATGTCAACTGC
TACTAAAATCAAGAAATTATCACGTGCACTCAAAGGAGAAGAATAAATAA
GACGTTGTTATTTTTATCATTTATGTATAAATTTTCAATTCGTGAACTTT
TGAAAAGTATAAAATAGGTTACATAAAAATGCNACAATATACAGCACCTG
ACCCCAAGAATGTAGGTGAAATTTGAATCAGACCTGAAAGATGTAGATTT
GAATTTTTAAAAACAATGAATGTTTTCAATGAAATTTTGAACCTCCANCT
TTTTTCTGGGATACAATACAAGAGGGATCAGTCAAGATGAATTTTTCTTC
TTGTTGGGAAGAAGTCAGGGACAATAATTGAAAGGCTCGCTTTCATTAAA
GATCTTGGCAACTAAACTTTTTTTAATTTAAAACTCTTTTCAATGTCCTA
CTCTATTTGAGATACTGTACACGATTGCATTCATTGATCATTTGAAAAAA
TACAACATTCTTGTACAATCTTGTAAGGGTGTACTTTGTAGCATGGCAGA
ATTTATCCCGAAATTTCTGTTTTGATGAACGATCTGGCGATATACCAGAA
AAAAACTTCAACTTTCAATATTCAATGGCGATCTCTATTGGAAGTTCTCC
TTTGAGGTGTACCACCAGCTGACGAAAGGTTTGCGTTGGATGCTTTCGGT
CTTTGGTTTTGTGTACGTGAATCGTTACGTCCACCTTTGTTCTTCAAAAC
AGCCGTTCTGTTGAATACGTCACGTGATTCTTTGTTGTAAGCGTCAGGGT
TCACTTTACGNGCAAATGAGGAAAAGTAAAAGAAAGGAAGAAAAGAAGAG
ACAAGAAAGTTGTTTTTATTTTGTAGGTTGAAAATGTTTTGTTAAAATAT
GTGAATAATGTAACTACACCATTGCCTCATAGCTCCGTTGGAACTTTTCC
CACAACGGGGACAATGATTTCTACTAAAGTCCCAATGTGGATAGAAATTC
TATTGTTCCAAACTTAGGCAAGTTTTCTAATTGGGGCGGGGTCCCAGCGG
GTCTGGGNAATTATTTAGGCATAAAAACTTTCACATCTTTAGTCTTCTTT
CGCTGAGTAGATGAAAATTTTTAATAAGACAACTCGCGAAGGTTTATGCA
AAAAATTCGTTTCGATAAAACAATAATCTGAATTGCATGCCTCTACAAAA
CTGCAGGAAATTCGTCTGTAAATGCCAGTCTAA

Coding sequence (CDS) from alignment at sc0000119:178934..189566-

>TCONS_00011025 ID=TCONS_00011025|Name=TCONS_00011025|organism=Clytia hemisphaerica|type=CDS|length=4557bp|location=Sequence derived from alignment at sc0000119:178934..189566- (Clytia hemisphaerica)
GTTGACAAAGAACTGATTGGTGGAATGGTCATCAACCTTGGTGATTACTT
CATTGATATGTCAACTGCTACTAAAATCAAGAAATTATCACGTGCACTCA
AAGGAGAAGAATAAGAATTGGACAAAGCCACCATGAAAACTTTGACGGGC
ACCTTGAACAAATTTGTCAAGTCAAACGAAACTTTGAAAATAGACACCAA
GGTGTTCTGGCTGAAGGAAATCGTTTGAAACGTGTGGATGGAGTGATCAG
TTCATTCAATAAAATTATGAGAGCTCGACGTGGTGAGGTTGATTGCACAG
TCACCACTGCCAAAATGTTATCGTTCAGGTATTAAAGGACAACAAATTTT
CAGACTTGACCGTCAACTTCATGGGCTGCCATCAAAGTTTTTGGTGTTGA
AGGAAGATACGCCCATGCTTTATTTTCTGCTGCCAGTCGAACAAAAGCTC
TAGACAAAGTTGAAGGGGAATTAAACAAAGTCCAAGGACTGTTACAAAAT
AATGAAAAACTTTCTGCTTATTGCAAGGATCCCACTGTAAATAAAAATGA
CAAACAAGGTTCGTCAATTCAGCTCTTCCTCTGCCTCTCTCCAAGAAGCT
GAAAAGATGGCGGCTGCAGCAAGAACTTCAATGCTCAGAAGTCTTCAAAC
AGTTGACAAAGAACTGATTGGTGGAATGGTCATCAACCTTGGTGATTACT
TCATTGATATGTCAACTGCTACTAAAATCAAGAAATTATCACGTGCACTC
AAAGGAGAAGAATAAGAATTGGACAAAGCCACCATGAAAACTTTGACGGG
CACCTTGAACAAATTTGTCAAGTCAAACGAAACTTTGAAAATAGACACCA
AGGTGTTCTGGCTGAAGGAAATCGTTTGAAACGTGTGGATGGAGTGATCA
GTTCATTCAATAAAATTATGAGAGCTCGACGTGGTGAGGTTGATTGCACA
GTCACCACTGCCAAAATGTTATCGTTCAGGTATTAAAGGACAACAAATTT
TCAGACTTGACCGTCAACTTCATGGGCTGCCATCAAAGTTTTTGGTGTTG
AAGGAAGATACGCCCATGCTTTATTTTCTGCTGCCAGTCGAACAAAAGCT
CTAGACAAAGTTGAAGGGGAATTAAACAAAGTCCAAGGACTGTTACAAAA
TAATGAAAAACTTTCTGCTTATTGCAAGGATCCCACTGTAAATAAAAATG
ACAAACAAGGTTCGTCAATTCAGCTCTTCCTCTGCCTCTCTCCAAGAAGC
TGAAAAGATGGCGGCTGCAGCAAGAACTTCAATGCTCAGAAGTCTTCAAA
CAGTTGACAAAGAACTGATTGGTGGAATGGTCATCAACCTTGGTGATTAC
TTCATTGATATGTCAACTGCTACTAAAATCAAGAAATTATCACGTGCACT
CAAAGGAGAAGAATAAGAATTGGACAAAGCCACCATGAAAACTTTGACGG
GCACCTTGAACAAATTTGTCAAGTCAAACGAAACTTTGAAAATAGACACC
AAGGTGTTCTGGCTGAAGGAAATCGTTTGAAACGTGTGGATGGAGTGATC
AGTTCATTCAATAAAATTATGAGAGCTCGACGTGGTGAGGTTGATTGCAC
AGTCACCACTGCCAAAATGTTATCGTTCAGGTATTAAAGGACAACAAATT
TTCAGACTTGACCGTCAACTTCATGGGCTGCCATCAAAGTTTTTGGTGTT
GAAGGAAGATACGCCCATGCTTTATTTTCTGCTGCCAGTCGAACAAAAGC
TCTAGACAAAGTTGAAGGGGAATTAAACAAAGTCCAAGGACTGTTACAAA
ATAATGAAAAACTTTCTGCTTATTGCAAGGATCCCACTGTAAATAAAAAT
GACAAACAAGGTTCGTCAATTCAGCTCTTCCTCTGCCTCTCTCCAAGAAG
CTGAAAAGATGGCGGCTGCAGCAAGAACTTCAATGCTCAGAAGTCTTCAA
ACAGTTGACAAAGAACTGATTGGTGGAATGGTCATCAACCTTGGTGATTA
CTTCATTGATATGTCAACTGCTACTAAAATCAAGAAATTATCACGTGCAC
TCAAAGGAGAAGAATAAGAATTGGACAAAGCCACCATGAAAACTTTGACG
GGCACCTTGAACAAATTTGTCAAGTCAAACGAAACTTTGAAAATAGACAC
CAAGGTGTTCTGGCTGAAGGAAATCGTTTGAAACGTGTGGATGGAGTGAT
CAGTTCATTCAATAAAATTATGAGAGCTCGACGTGGTGAGGTTGATTGCA
CAGTCACCACTGCCAAAATGTTATCGTTCAGGTATTAAAGGACAACAAAT
TTTCAGACTTGACCGTCAACTTCATGGGCTGCCATCAAAGTTTTTGGTGT
TGAAGGAAGATACGCCCATGCTTTATTTTCTGCTGCCAGTCGAACAAAAG
CTCTAGACAAAGTTGAAGGGGAATTAAACAAAGTCCAAGGACTGTTACAA
AATAATGAAAAACTTTCTGCTTATTGCAAGGATCCCACTGTAAATAAAAA
TGACAAACAAGGTTCGTCAATTCAGCTCTTCCTCTGCCTCTCTCCAAGAA
GCTGAAAAGATGGCGGCTGCAGCAAGAACTTCAATGCTCAGAAGTCTTCA
AACAGTTGACAAAGAACTGATTGGTGGAATGGTCATCAACCTTGGTGATT
ACTTCATTGATATGTCAACTGCTACTAAAATCAAGAAATTATCACGTGCA
CTCAAAGGAGAAGAATAAGAATTGGACAAAGCCACCATGAAAACTTTGAC
GGGCACCTTGAACAAATTTGTCAAGTCAAACGAAACTTTGAAAATAGACA
CCAAGGTGTTCTGGCTGAAGGAAATCGTTTGAAACGTGTGGATGGAGTGA
TCAGTTCATTCAATAAAATTATGAGAGCTCGACGTGGTGAGGTTGATTGC
ACAGTCACCACTGCCAAAATGTTATCGTTCAGGTATTAAAGGACAACAAA
TTTTCAGACTTGACCGTCAACTTCATGGGCTGCCATCAAAGTTTTTGGTG
TTGAAGGAAGATACGCCCATGCTTTATTTTCTGCTGCCAGTCGAACAAAA
GCTCTAGACAAAGTTGAAGGGGAATTAAACAAAGTCCAAGGACTGTTACA
AAATAATGAAAAACTTTCTGCTTATTGCAAGGATCCCACTGTAAATAAAA
ATGACAAACAAGGTTCGTCAATTCAGCTCTTCCTCTGCCTCTCTCCAAGA
AGCTGAAAAGATGGCGGCTGCAGCAAGAACTTCAATGCTCAGAAGTCTTC
AAACAGTTGACAAAGAACTGATTGGTGGAATGGTCATCAACCTTGGTGAT
TACTTCATTGATATGTCAACTGCTACTAAAATCAAGAAATTATCACGTGC
ACTCAAAGGAGAAGAATAAGAATTGGACAAAGCCACCATGAAAACTTTGA
CGGGCACCTTGAACAAATTTGTCAAGTCAAACGAAACTTTGAAAATAGAC
ACCAAGGTGTTCTGGCTGAAGGAAATCGTTTGAAACGTGTGGATGGAGTG
ATCAGTTCATTCAATAAAATTATGAGAGCTCGACGTGGTGAGGTTGATTG
CACAGTCACCACTGCCAAAATGTTATCGTTCAGGTATTAAAGGACAACAA
ATTTTCAGACTTGACCGTCAACTTCATGGGCTGCCATCAAAGTTTTTGGT
GTTGAAGGAAGATACGCCCATGCTTTATTTTCTGCTGCCAGTCGAACAAA
AGCTCTAGACAAAGTTGAAGGGGAATTAAACAAAGTCCAAGGACTGTTAC
AAAATAATGAAAAACTTTCTGCTTATTGCAAGGATCCCACTGTAAATAAA
AATGACAAACAAGGTTCGTCAATTCAGCTCTTCCTCTGCCTCTCTCCAAG
AAGCTGAAAAGATGGCGGCTGCAGCAAGAACTTCAATGCTCAGAAGTCTT
CAAACAGTTGACAAAGAACTGATTGGTGGAATGGTCATCAACCTTGGTGA
TTACTTCATTGATATGTCAACTGCTACTAAAATCAAGAAATTATCACGTG
CACTCAAAGGAGAAGAATAAGAATTGGACAAAGCCACCATGAAAACTTTG
ACGGGCACCTTGAACAAATTTGTCAAGTCAAACGAAACTTTGAAAATAGA
CACCAAGGTGTTCTGGCTGAAGGAAATCGTTTGAAACGTGTGGATGGAGT
GATCAGTTCATTCAATAAAATTATGAGAGCTCGACGTGGTGAGGTTGATT
GCACAGTCACCACTGCCAAAATGTTATCGTTCAGGTATTAAAGGACAACA
AATTTTCAGACTTGACCGTCAACTTCATGGGCTGCCATCAAAGTTTTTGG
TGTTGAAGGAAGATACGCCCATGCTTTATTTTCTGCTGCCAGTCGAACAA
AAGCTCTAGACAAAGTTGAAGGGGAATTAAACAAAGTCCAAGGACTGTTA
CAAAATAATGAAAAACTTTCTGCTTATTGCAAGGATCCCACTGTAAATAA
AAATGACAAACAAGGTTCGTCAATTCAGCTCTTCCTCTGCCTCTCTCCAA
GAAGCTGAAAAGATGGCGGCTGCAGCAAGAACTTCAATGCTCAGAAGTCT
TCAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006179XLOC_006179Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011025-proteinTCONS_00011025-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011025-exon-sc0000119-1575043694:189187..189566TCONS_00011025-exon-sc0000119-1575043694:189187..189566Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1575043694:184212..184259TCONS_00011025-exon-sc0000119-1575043694:184212..184259Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1575043694:183512..183695TCONS_00011025-exon-sc0000119-1575043694:183512..183695Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1575043694:183228..183287TCONS_00011025-exon-sc0000119-1575043694:183228..183287Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1575043694:182901..183013TCONS_00011025-exon-sc0000119-1575043694:182901..183013Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1575043694:180550..180636TCONS_00011025-exon-sc0000119-1575043694:180550..180636Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1575043694:178934..180184TCONS_00011025-exon-sc0000119-1575043694:178934..180184Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1510915933:189187..189566TCONS_00011025-exon-sc0000119-1510915933:189187..189566Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1510915933:184212..184259TCONS_00011025-exon-sc0000119-1510915933:184212..184259Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1510915933:183512..183695TCONS_00011025-exon-sc0000119-1510915933:183512..183695Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1510915933:183228..183287TCONS_00011025-exon-sc0000119-1510915933:183228..183287Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1510915933:182901..183013TCONS_00011025-exon-sc0000119-1510915933:182901..183013Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1510915933:180550..180636TCONS_00011025-exon-sc0000119-1510915933:180550..180636Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1510915933:178934..180184TCONS_00011025-exon-sc0000119-1510915933:178934..180184Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1491911889:189187..189566TCONS_00011025-exon-sc0000119-1491911889:189187..189566Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1491911889:184212..184259TCONS_00011025-exon-sc0000119-1491911889:184212..184259Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1491911889:183512..183695TCONS_00011025-exon-sc0000119-1491911889:183512..183695Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1491911889:183228..183287TCONS_00011025-exon-sc0000119-1491911889:183228..183287Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1491911889:182901..183013TCONS_00011025-exon-sc0000119-1491911889:182901..183013Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1491911889:180550..180636TCONS_00011025-exon-sc0000119-1491911889:180550..180636Clytia hemisphaericaexon
TCONS_00011025-exon-sc0000119-1491911889:178934..180184TCONS_00011025-exon-sc0000119-1491911889:178934..180184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:178934..189566 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
280.206	288.718	330.108	353.8	203.838	163.634	247.685	265.587	343.081	273.586	331.595	391.546	295.281	305.461	318.693	305.886	444.661	479.967	183.992	183.731	419.917	408.731	280.048	300.34	378.15	352.414	391.555	386.523	240.252	223.169
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000711ATPase_OSCP/dsu
IPR026015ATP_synth_OSCP/delta_N
IPR020781ATPase_OSCP/d_CS
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0016020 membrane
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Blast
[Close]
BLAST of TCONS_00011025 vs. Swiss-Prot (Human)
Match: ATPO (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.320e-44
Identity = 83/214 (38.79%), Postives = 132/214 (61.68%), Query Frame = 3 
Query:  336 MAAAARTSMLRSLQTVRQFSSSSA-SLQEAEKAAIKVFGVEGRYAHALFSAASRTKALDKVEGELNKVQGLLQNNEKLSAYCKDPTVNKNDKQDVIVQVLKDNKFSDLTVNFMGVLAEGNRLKRVDGVISSFNKIMRARRGEVDCTVTTAKELDKATMKTLTGTLNKFVKSNETLKIDTKVDKELIGGMVINLGDYFIDMSTATKIKKLSRALK 974
            MAA A + + R    VR FS+S      +  +  ++V+G+EGRYA AL+SAAS+   L++VE EL +V  +L+   K++A   +P V ++ K   +  +    +FS LT N + +LAE  RL    GV+S+F+ +M   RGEV CTVT+A  L++AT+  L   L  F+   + LK++ K D  ++GGM++ +G+ ++DMS  TKI+KL RA++
Sbjct:    1 MAAPAVSGLSRQ---VRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKE-PKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMR 210
The following BLAST results are available for this feature:
BLAST of TCONS_00011025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATPO1.320e-4438.79ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
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