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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011015 ID=TCONS_00011015|Name=TCONS_00011015|organism=Clytia hemisphaerica|type=transcript|length=3068bpRun BLAST on NCBI protein sequence of TCONS_00011015-protein >TCONS_00011015-protein ID=TCONS_00011015-protein|Name=TCONS_00011015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp YNHPESKRNLEIKTTIKTKGAVYKQTHFFTFLGTGDHPLLGFVMALPLLPRun BLAST on NCBI transcript from alignment at sc0000119:572127..599021+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011015 ID=TCONS_00011015|Name=TCONS_00011015|organism=Clytia hemisphaerica|type=transcript|length=26895bp|location=Sequence derived from alignment at sc0000119:572127..599021+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000119:572127..599021+ >TCONS_00011015 ID=TCONS_00011015|Name=TCONS_00011015|organism=Clytia hemisphaerica|type=CDS|length=33372bp|location=Sequence derived from alignment at sc0000119:572127..599021+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011015 vs. Swiss-Prot (Human)
Match: EFHC2 (EF-hand domain-containing family member C2 OS=Homo sapiens GN=EFHC2 PE=1 SV=2) HSP 1 Score: 514.998 bits (1325), Expect = 7.468e-168 Identity = 279/633 (44.08%), Postives = 391/633 (61.77%), Query Frame = 2
Query: 806 DRRVLRFYCYWD----DTDSMFGDPRECVLHYFLADDTVEIREIIQPNSGRDAVPLFLRRAKLXPAPQDEEFYTVDHFNVGREIKMYSRVYHLTGCDQFTHNFLKKLGVRVKPPLNTPNDPYSSHRHELAESMQPLRPYEKEDTLRQFLENDRRVLRFYCYWDDTDSMFGDPRECVLHYFLADDTVEIREIIQPNSGRDAVPLFLRRAKLPKES-TEMHQPGKVTKRTVLNVFGP--TGQGGRYILDSLKTGAVHTEYYHDSDLVVGAIINVWGRKFTICGCDEFTQEYYRSKYGYDNFDAVDYKSQKDGPAT-RVMPPYNGFGSEEDSLCNCLSLIPKPPRRDFIKFMEKDRHGLESNVLRFVAKMDTQKPIEVDRRFTISYFLSDDTILVFEPPQRNSGIIGGKFLERGRVKKPD--------GGHYTAQDLFIGGNVQFCKHPFILIDADEYAINYMESHADEFPHANPQLVSNKIRRLLTDNASEVRLMLDSADRKKTGSMSFETFKKIVKKIGGENISAHEILTIARHFGDFHLRDEDFETLVASVQEQLRKVNYENFSLMNDACIYVDERKTGFIPLGELKNISKSFKLPIQDHLLEKLLYHTKSNGDGHLDYQHFISFLNWRDQPI 2656
D++VL F Y + D R ++++ DDT+++ E NSG R P P +++FYTV HFNVG E+ Y R + + CD FT NFL+K+GV+V PP+ P DPY R E+ E ++PLRPYE DTL+QFL+ ++L F+C WDD+ SMFGD RE +LHYFL DDT+EI+E++ +SGRDA+ +FLRR+KLPK ++QPG++T R VLN +G Q Y+ D K G V E+Y DSDL +G INVWGRK + CDEFT+ YY+SKYG +NF +V K P R PPYNGFGSEEDSL NC+ L P P RR+F KFMEKD +G +SN+LRF AK+ T K +++DR F ISY+L DDTI VFEP +RNSGI GG FL+R RVKKP + A++L+IG V + F L++ADEY +NYME + D++P +N +L K+++ + E++ + +AD K T + + TF+ I+ + N++ E +TIARH+ D + L+A E+ +K +ENF +C+Y D K +P ++K + KS +LP+ D LLE LL + + + +DY+ F S LNWR P+
Sbjct: 75 DKQVLSFDAYLEEEVLDKSQTNYRIRYYKIYFYPEDDTIQVNEPEVKNSGLLQGTSIRRHRITLPPPDEDQFYTVYHFNVGTEVVFYGRTFKIYDCDAFTRNFLRKIGVKVNPPVQCPEDPYMKIRREVVEHVEPLRPYESLDTLKQFLQYHGKILCFFCLWDDSVSMFGDRRELILHYFLCDDTIEIKELLPHSSGRDALKMFLRRSKLPKNCPPRVYQPGQITDRAVLNSYGDFIKNQADGYLFDRYKLGKVDQEFYKDSDLSLGVTINVWGRKVLLYDCDEFTKSYYKSKYGIENFTSVSCKPPSPPPKIERKFPPYNGFGSEEDSLRNCIDLKPTPHRRNFKKFMEKDSYGSKSNILRFFAKLVTDKCVDLDRMFVISYYLGDDTISVFEPIERNSGIAGGMFLKRSRVKKPGQEVFKSELSEYIKAEELYIGVTVNVNGYLFRLLNADEYTLNYMEQNTDKYPFSNLKLALQKLKQ-EEGKSRELKQVFKAADSKHTNMVDYNTFRDILMSLTVGNLAEQEFVTIARHYRVPEGTCSDMDFLIALAHEKFKKNMFENFDTFIYSCVYEDREKKNVLPTKDIKRLCKSSRLPLSDDLLESLLSRFE-DSEKQIDYKSFFSALNWRKNPV 705 HSP 2 Score: 384.03 bits (985), Expect = 3.394e-118 Identity = 234/616 (37.99%), Postives = 329/616 (53.41%), Query Frame = 2
Query: 131 MALPLLPGLNFDRRLGKDKFHKSQCFDYRNDVAVHVAEHKSGIGGELMPGSKAKPRNSSYPKGSGKQAPAWVAFDRQVLCFDAYFQETVHEKREEKNRIRKCKIYFYLEDDTIQVIERKVENSGIPQGTLIRRHRIPLPAPQDEEFYTVDHFNVGREIKMYSRVYHLTGCDQFTHNFLKKLGVRVKPPLNTPNDPYSSHRHELAESMQPLRPYEKEDTLRQFLENDRRVLRFYCYWDDTDSMFGDPRECVLHYFLADDTVEIREIIQPNSGRDAVPLFLRRAKLXP---------------------------------------APQDEEFYTVDHFNVGREIKMYSRVYHLTGCDQFTHNFLK-KLGV------------------RVKPPLNTPNDPYSSHRHELAESMQPLRPYEKEDTLRQFLEND-----RRVLRFYCYWDDTDSMFGDPRECVLHYFLADDTVEIREIIQPNSGRDAVPLFLRRAKLPKESTEMHQPGKVTKRTVLNVFGPTGQGGRYILDSLKTGAVHTEYYHDSDLVVGAIINVWGRKFTICGCDEFTQEYYRS---KYGYDNFD-AVDYKSQKDGPATRVMPPYNGFGSEEDSLCN 1777
MALPLLPG +F+R +GK+KFHKSQ + + N+V + V++ K GIGGE + G K KP+ S YPKG G P+WVAFD+QVL FDAY +E V +K + RIR KIYFY EDDTIQV E +V+NSG+ QGT IRRHRI LP P +++FYTV HFNVG E+ Y R + + CD FT NFL+K+GV+V PP+ P DPY R E+ E ++PLRPYE DTL+QFL+ ++L F+C WDD+ SMFGD RE +LHYFL DDT+EI+E++ +SGRDA+ +FLRR+KL D+EFY ++G I ++ R L CD+FT ++ K K G+ R PP N + S L + L+P ++F+E D +LRF+ TD R V+ Y+L DDT+ + E I+ NSG A +FL+R+++ K PG+ ++ L +EY +L +G +NV G F + DE+T Y KY + N A+ Q++G + + + S+ ++ +
Sbjct: 1 MALPLLPGNSFNRNVGKEKFHKSQHWGFCNNVMMLVSDEKPGIGGEPLLGQKIKPKCSIYPKGDGSDVPSWVAFDKQVLSFDAYLEEEVLDKSQTNYRIRYYKIYFYPEDDTIQVNEPEVKNSGLLQGTSIRRHRITLPPPDEDQFYTVYHFNVGTEVVFYGRTFKIYDCDAFTRNFLRKIGVKVNPPVQCPEDPYMKIRREVVEHVEPLRPYESLDTLKQFLQYHGKILCFFCLWDDSVSMFGDRRELILHYFLCDDTIEIKELLPHSSGRDALKMFLRRSKLPKNCPPRVYQPGQITDRAVLNSYGDFIKNQADGYLFDRYKLGKVDQEFYKDSDLSLGVTINVWGRKVLLYDCDEFTKSYYKSKYGIENFTSVSCKPPSPPPKIERKFPPYNG----FGSEEDSLRNCID-LKPTPHRRNFKKFMEKDSYGSKSNILRFFAKL-VTDKCVDLDRMFVISYYLGDDTISVFEPIERNSGI-AGGMFLKRSRVKK-------PGQEVFKSEL-----------------------SEYIKAEELYIGVTVNVNGYLFRLLNADEYTLNYMEQNTDKYPFSNLKLALQKLKQEEGKSRELKQVFKAADSKHTNMVD 579 The following BLAST results are available for this feature:
BLAST of TCONS_00011015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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