TCONS_00011013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011013
Unique NameTCONS_00011013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011013 ID=TCONS_00011013|Name=TCONS_00011013|organism=Clytia hemisphaerica|type=transcript|length=445bp
tgcgtacgtactatatggatgaccCCTAATGTTTATCAAAAtctcttttt
cactttttaggtatctggaactaaagaaaatttaaatataaataaataat
aaccggtgattataaaaacaaaaatgatatttaaaatttctttggtggta
TTCTTGTTTTCTTTACACAATGTTGGATGTGATGTGTTACATGAAGTCAA
GCAATACGAAGAATTGAAAGCACTTTTAAGCTTGGATGANTTACACAATG
TTGGATGTGATATGTTACATGAAGTCAAGCAATACGAAGAATTGAAAGCA
CTTTTAAGCTTGGATGACGCAGTTGGTGTATTTTTTTATACTCACAATGC
CGCCTCAGAATTCAAAAGCAGAACACTTCAAATTATGGATAAAGTACAAG
ACAGGATGAAGAAATCAGGCAAATATTGGATCAGGCTTATCAAGG
Run BLAST on NCBI

protein sequence of TCONS_00011013-protein

>TCONS_00011013-protein ID=TCONS_00011013-protein|Name=TCONS_00011013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MIFKISLVVFLFSLHNVGCDVLHEVKQYEELKALLSLDXLHNVGCDMLHE
VKQYEELKALLSLDDAVGVFFYTHNAASEFKSRTLQIMDKVQDRMKKSGK
YWIRLIK
Run BLAST on NCBI

transcript from alignment at sc0000119:533277..534837+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011013 ID=TCONS_00011013|Name=TCONS_00011013|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at sc0000119:533277..534837+ (Clytia hemisphaerica)
tgcgtacgtactatatggatgaccCCTAATGTTTATCAAAAtctcttttt
cactttttaggtatctggaactaaagaaaatttaaatataaataaataat
aaccggtgattataaaaacaaaaatgatatttaaaatttctttggtggta
TTCTTGTTTTCTTTACACAATGTTGGATGTGATGTGTTACATGAAGTCAA
GCAATACGAAGAATTGAAAGCACTTTTAAGCTTGGATGANTTACACAATG
TTGGATGTGATATGTTACATGAAGTCAAGCAATACGAAGAATTGAAAGCA
CTTTTAAGCTTGGATGACGCAGTTGGTGTATTTTTTTATACTCACAATGC
CGCCTCAGAATTCAAAAGTAAGTATTATTGATGTTTTTAAGACTTTCCTG
GCATCcctttgaaataagtttttctgtgtcttaaaactttttatttctaa
ccgagttgtttttcctcgatttacagataactgaaaaaatcacatttaaa
tttactttttcatcgatatttttacagaattaaGGATTTAACGAGTTAAA
CTCAAtccgaaaaaaaatcccaagacaatttttcagttcaatctattggg
aacatagtatcgaaattattttttcaaaattcaaaagctatgggtgactt
taacttctttgaagtaggtaaggttaagattcttaagattttaattatat
cctgcccagttttttaaattcagccgaaacttttaccattagaaagagaa
tattattggctttcagaaaatatatacttttgatatataaaaatttgttg
ttctaaaNtggctttcagaaaatatatacttttgatatataaaaatttgt
tgttctaaaaaatatgatcaattaaagagaatgtgtcaagaaaggtgaac
acataccttaacgACTTTAAATGCTCTTGCACATCTCTGActtacttaaa
attttcttatgtCAGCTGCACAGAAAGAGGAGTTAATCTTGTTTACTTGA
AAGAACATAGAAAACATATAACATAAGCtacgtcataaattttgaaaaaa
agggaTTTTTAAATGGccatagaaagtgattgaaaaaaaatctcttgaag
TGAGATAGCTCATTTTAATCTCCCTGGagtaatttttccaaaaactctaa
aaaaacaATACCTAAAATCAGACCAGACGTCCCCTTTAGACATTAAAGTC
CGTGATTGTAGTCCTGCCATCttgcttttaatttttaatattcccaatgg
ggatagaaaatctattgttcccGAGCTTGGAATATCCCACCGGGGccgaa
attgtagggtattttgtccaccggggacgacattttggtaacatttttca
gtggggctaaAGTTCCAGCttgtctgtgacacaggggtgtcatcGTTTTC
AAGGAGATCACAGCCAGTTGGATGGACTATGTATTGGTGAATATTATATT
TCTAATTGCTCATCATGTCCCTATTTTTTATAGGCAGAACACTTCAAATT
ATGGATAAAGTACAAGACAGGATGAAGAAATCAGGCAAATATTGGATCAG
GCTTATCAAGG

Coding sequence (CDS) from alignment at sc0000119:533277..534837+

>TCONS_00011013 ID=TCONS_00011013|Name=TCONS_00011013|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0000119:533277..534837+ (Clytia hemisphaerica)
atgatatttaaaatttctttggtggtaTTCTTGTTTTCTTTACACAATGT
TGGATGTGATGTGTTACATGAAGTCAAGCAATACGAAGAATTGAAAGCAC
TTTTAAGCTTGGATGANTTACACAATGTTGGATGTGATATGTTACATGAA
GTCAAGCAATACGAAGAATTGAAAGCACTTTTAAGCTTGGATGACGCAGT
TGGTGTATTTTTTTATACTCACAATGCCGCCTCAGAATTCAAAAGCAGAA
CACTTCAAATTATGGATAAAGTACAAGACAGGATGAAGAAATCAGGCAAA
TATTGGATCAGGCTTATCAAGatgatatttaaaatttctttggtggtaTT
CTTGTTTTCTTTACACAATGTTGGATGTGATGTGTTACATGAAGTCAAGC
AATACGAAGAATTGAAAGCACTTTTAAGCTTGGATGANTTACACAATGTT
GGATGTGATATGTTACATGAAGTCAAGCAATACGAAGAATTGAAAGCACT
TTTAAGCTTGGATGACGCAGTTGGTGTATTTTTTTATACTCACAATGCCG
CCTCAGAATTCAAAAGCAGAACACTTCAAATTATGGATAAAGTACAAGAC
AGGATGAAGAAATCAGGCAAATATTGGATCAGGCTTATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006172XLOC_006172Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011013-proteinTCONS_00011013-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011013-exon-sc0000119-1491911889:533277..533643TCONS_00011013-exon-sc0000119-1491911889:533277..533643Clytia hemisphaericaexon
TCONS_00011013-exon-sc0000119-1510915933:533277..533643TCONS_00011013-exon-sc0000119-1510915933:533277..533643Clytia hemisphaericaexon
TCONS_00011013-exon-sc0000119-1575043694:533277..533643TCONS_00011013-exon-sc0000119-1575043694:533277..533643Clytia hemisphaericaexon
TCONS_00011013-exon-sc0000119-1491911889:534760..534837TCONS_00011013-exon-sc0000119-1491911889:534760..534837Clytia hemisphaericaexon
TCONS_00011013-exon-sc0000119-1510915933:534760..534837TCONS_00011013-exon-sc0000119-1510915933:534760..534837Clytia hemisphaericaexon
TCONS_00011013-exon-sc0000119-1575043694:534760..534837TCONS_00011013-exon-sc0000119-1575043694:534760..534837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:533277..534837 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.67785	7.84288	2.12855	1.43173	2.62131	0.675244	2.19151	1.54376	6.48604	3.40093	3.9795	4.69941	6.23464	7.19556	6.81368	6.11854	3.40756	5.46583	7.079	12.9982	14.0222	16.4383	5.94117	9.47692	1.01049	1.23753	8.5808	10.2741	5.34283	7.64887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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