TCONS_00011011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011011
Unique NameTCONS_00011011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011011 ID=TCONS_00011011|Name=TCONS_00011011|organism=Clytia hemisphaerica|type=transcript|length=2351bp
CGCAAAATAAGTTCGCAAGTACCAAGACATTAACAAAATATCTATCTATA
AAAGTACTTTTGTTAGAAAATGCTAACAGCCATTCAAATTCTTAAACATG
GAAGAGGGATGAAGTTTTATTGTTGGAAGCAAAATAATTCTAATGTTGTC
ATATCATCGAGTCTAAAAAACTTTAGTAGAGACGAAAACTATAAAATTAC
ATAGACTATTTTCCAAAGTAGAAATAATTATACAAAAAATGCAGTAATCG
TAACAAAACATAAATAAATTAATAAGGAACGTAAGAAGATATTGTCCCTT
GACGCCATTTTAAAATTCACTACTGCAAAGGTGCAACAGCCTTAAGAAGA
TTGAGAAAATCTTTCTATGCTTTTAAAACATGTGTGAATTATGTTCGAAT
CTTTTTGCAATGCAACATCTTTTACAGCACGAATTGAGAATTGTACAACA
AATTAAATCGCGATTTTCATTATAAACATTTACacataaagaaaacaaaa
ttaccATAAAGTTAATATCAAATCTCTGCTACCAAATTAAGACAAAGTTT
CACCTTTTGTTACTCTAGCTTCAATGAATTCAATTTTCTGTTCAAGTCCA
GTTAATTTAGTGTCCAAATCTGCAAGTTTCGATTTACAAGCAATGtcaaa
gttattcaagaaagtTGCCATCTTTTTTATTGCTGACGTAATAGCTTCAA
TATATTCTCGATTCTCCCAATCTTGCTGGATCTGTTTTTGAATATCCATG
AtggtaatttatgaaaatggtATTCAGCAcaagatttcaaaaacaaagtc
CTTATCCACTGTGTATTGCAAAGTtacttgatgaattttttgttgttgat
atATTATTGTTgctgaaaataacgaaaaaaatgTATGAAATACATAATCA
AAATAATTGTATCCAAAACACATCAAAATACTTTCTCAGTCGTTTTAGAG
TATAAACACAATTATTCAGCCAAGATTCAAGAACAAGAAGGATTGAGTTT
CCACACTGCTAAAAACCttagtttttaataaaaatacaagaaatgttttc
aagaaaaacctGCACCTAAAATCATAGATACaagaaaatagtaaaaatat
taCACACCTCTATTATAAACAACTTTAAAAATATCACACAAAATATAtat
tatgaactttaaaaaatattacacaaaaatatatattatgaactttaaaa
aatattaactaTGGAACAGAAATCACTCCACGAGAATTAAAATTTAGGAG
TATGCATATTTTAAGTTATAGACCTGGTTGGACCCCCTCCCTTTTGAAAC
ATTTCCGTCGGGGAGGTATACTGCCTGTAACTGAAAGTAATTACCTAGTA
ATGTTTTTTTTGACGTagcataaattttatttttcaaagaccTTAGCTGT
CTTTACTGAATAGTATTATGATTAATCCAAAAGGTTTTCAAATAGTGTTA
AGAATAGATACGTATATTTATGTATCAAAGTATAAAAAGTAATTCTTGGG
TAACACATAAGAATAACACATAAGAATTTTAGGGCTGAAGCACTATCGCA
actaaaaacaatcaaatacgAAATCCCCACCTAAATAttaaaagggaaat
atttttatcatcCCCATTGGTTCATTCAATTAAACTAACAAGTGATCAGG
TCATTGGCActaaggtacacgtttttttttataagaacgtcaaaaatttt
cgaagccttcggatgttcttagttttttggatttgaagcctaaaaatgtt
cttaaaatgttcttattttcagcattgtttgagcattttgatgtaatttc
ttaagaaattgcatgtttttaagtttccaaagccttagtatgttcttaaa
tttttgggcctcgaagcttatgttcttatatagtttgttcttataaaaaa
acgtgtattacggTTGGAAGCAAGAGGTTAAACTTATATCAGAGCCCCTT
GAAATAATTAACAAGTTTACGAGAACAAAATTAAAAGAGCAACTTGAAAA
TCATTCAGAAGTGTTCAGTCTGTGTTAACGTTCAATGACTTTGGGTCAAT
ATACACTCATTCTATTGCTTTTTTACTTGTTGAACAGAATCAATTGGATT
CACAGAATTGGCGGTGGAAGGAGCGCTTATGATACTTGGCAAAACGTGTC
TACGAACNAAAATATTacacaaaaatatatattatgaactttaaaaaata
ttaactaTGGAACAGAAATCACTCCACGAGAATTAAAATTTAGGAGTATG
TATATTTTAAGTTATAGACCTGGTTGGACCCCCTCTCTTTTGAAACATTT
CCGTCGGGGAGGTATACTTCCTGTAACTGAAAGTAATTACCTAGTAATGT
T
Run BLAST on NCBI

transcript from alignment at sc0000119:473765..476115+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011011 ID=TCONS_00011011|Name=TCONS_00011011|organism=Clytia hemisphaerica|type=transcript|length=2351bp|location=Sequence derived from alignment at sc0000119:473765..476115+ (Clytia hemisphaerica)
CGCAAAATAAGTTCGCAAGTACCAAGACATTAACAAAATATCTATCTATA
AAAGTACTTTTGTTAGAAAATGCTAACAGCCATTCAAATTCTTAAACATG
GAAGAGGGATGAAGTTTTATTGTTGGAAGCAAAATAATTCTAATGTTGTC
ATATCATCGAGTCTAAAAAACTTTAGTAGAGACGAAAACTATAAAATTAC
ATAGACTATTTTCCAAAGTAGAAATAATTATACAAAAAATGCAGTAATCG
TAACAAAACATAAATAAATTAATAAGGAACGTAAGAAGATATTGTCCCTT
GACGCCATTTTAAAATTCACTACTGCAAAGGTGCAACAGCCTTAAGAAGA
TTGAGAAAATCTTTCTATGCTTTTAAAACATGTGTGAATTATGTTCGAAT
CTTTTTGCAATGCAACATCTTTTACAGCACGAATTGAGAATTGTACAACA
AATTAAATCGCGATTTTCATTATAAACATTTACacataaagaaaacaaaa
ttaccATAAAGTTAATATCAAATCTCTGCTACCAAATTAAGACAAAGTTT
CACCTTTTGTTACTCTAGCTTCAATGAATTCAATTTTCTGTTCAAGTCCA
GTTAATTTAGTGTCCAAATCTGCAAGTTTCGATTTACAAGCAATGtcaaa
gttattcaagaaagtTGCCATCTTTTTTATTGCTGACGTAATAGCTTCAA
TATATTCTCGATTCTCCCAATCTTGCTGGATCTGTTTTTGAATATCCATG
AtggtaatttatgaaaatggtATTCAGCAcaagatttcaaaaacaaagtc
CTTATCCACTGTGTATTGCAAAGTtacttgatgaattttttgttgttgat
atATTATTGTTgctgaaaataacgaaaaaaatgTATGAAATACATAATCA
AAATAATTGTATCCAAAACACATCAAAATACTTTCTCAGTCGTTTTAGAG
TATAAACACAATTATTCAGCCAAGATTCAAGAACAAGAAGGATTGAGTTT
CCACACTGCTAAAAACCttagtttttaataaaaatacaagaaatgttttc
aagaaaaacctGCACCTAAAATCATAGATACaagaaaatagtaaaaatat
taCACACCTCTATTATAAACAACTTTAAAAATATCACACAAAATATAtat
tatgaactttaaaaaatattacacaaaaatatatattatgaactttaaaa
aatattaactaTGGAACAGAAATCACTCCACGAGAATTAAAATTTAGGAG
TATGCATATTTTAAGTTATAGACCTGGTTGGACCCCCTCCCTTTTGAAAC
ATTTCCGTCGGGGAGGTATACTGCCTGTAACTGAAAGTAATTACCTAGTA
ATGTTTTTTTTGACGTagcataaattttatttttcaaagaccTTAGCTGT
CTTTACTGAATAGTATTATGATTAATCCAAAAGGTTTTCAAATAGTGTTA
AGAATAGATACGTATATTTATGTATCAAAGTATAAAAAGTAATTCTTGGG
TAACACATAAGAATAACACATAAGAATTTTAGGGCTGAAGCACTATCGCA
actaaaaacaatcaaatacgAAATCCCCACCTAAATAttaaaagggaaat
atttttatcatcCCCATTGGTTCATTCAATTAAACTAACAAGTGATCAGG
TCATTGGCActaaggtacacgtttttttttataagaacgtcaaaaatttt
cgaagccttcggatgttcttagttttttggatttgaagcctaaaaatgtt
cttaaaatgttcttattttcagcattgtttgagcattttgatgtaatttc
ttaagaaattgcatgtttttaagtttccaaagccttagtatgttcttaaa
tttttgggcctcgaagcttatgttcttatatagtttgttcttataaaaaa
acgtgtattacggTTGGAAGCAAGAGGTTAAACTTATATCAGAGCCCCTT
GAAATAATTAACAAGTTTACGAGAACAAAATTAAAAGAGCAACTTGAAAA
TCATTCAGAAGTGTTCAGTCTGTGTTAACGTTCAATGACTTTGGGTCAAT
ATACACTCATTCTATTGCTTTTTTACTTGTTGAACAGAATCAATTGGATT
CACAGAATTGGCGGTGGAAGGAGCGCTTATGATACTTGGCAAAACGTGTC
TACGAACNAAAATATTacacaaaaatatatattatgaactttaaaaaata
ttaactaTGGAACAGAAATCACTCCACGAGAATTAAAATTTAGGAGTATG
TATATTTTAAGTTATAGACCTGGTTGGACCCCCTCTCTTTTGAAACATTT
CCGTCGGGGAGGTATACTTCCTGTAACTGAAAGTAATTACCTAGTAATGT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006171XLOC_006171Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011011-exon-sc0000119-1491911889:473765..476115TCONS_00011011-exon-sc0000119-1491911889:473765..476115Clytia hemisphaericaexon
TCONS_00011011-exon-sc0000119-1510915933:473765..476115TCONS_00011011-exon-sc0000119-1510915933:473765..476115Clytia hemisphaericaexon
TCONS_00011011-exon-sc0000119-1575043694:473765..476115TCONS_00011011-exon-sc0000119-1575043694:473765..476115Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:473765..476115 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13748	1.32036	0.980395	1.46038	12.1616	8.02269	14.2063	13.6831	5.9308	5.47189	3.59642	3.9591	1.38957	1.2521	1.09396	1.1349	1.89117	1.50553	1.30886	1.81057	3.05121	2.90797	1.46995	1.82461	7.01329	9.37783	3.91911	2.54432	2.52877	2.86237
Blast
[Close]
BLAST of TCONS_00011011 vs. Swiss-Prot (Human)
Match: BRK1 (Protein BRICK1 OS=Homo sapiens GN=BRK1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.942e-26
Identity = 46/68 (67.65%), Postives = 61/68 (89.71%), Query Frame = -1 
Query:  540 IQKQIQQDWENREYIEAITSAIKKMATFLNNFDIACKSKLADLDTKLTGLEQKIEFIEARVTKGETLS 743
            +Q++I QDW NREYIE ITS+IKK+A FLN+FD++C+S+LA L+ KLT LE++IE+IEARVTKGETL+
Sbjct:    8 VQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTKGETLT 75
The following BLAST results are available for this feature:
BLAST of TCONS_00011011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRK13.942e-2667.65Protein BRICK1 OS=Homo sapiens GN=BRK1 PE=1 SV=1[more]
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