TCONS_00011008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011008
Unique NameTCONS_00011008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011008 ID=TCONS_00011008|Name=TCONS_00011008|organism=Clytia hemisphaerica|type=transcript|length=551bp
ccaGCCTTGAATTTGTCACCATCAGGAAACGATTAGAAAATTACTTTGAA
AGActaaaatttaagaagaaaGTCCTTCGATTGCTAGACTAAATATGAAA
CATGTCTTTCATAGGTGATTAAATACGTgtaaaaagaatataaaaacTTT
CCTACACCCTACCTAGCCTAGAATAATAAAAATGGCTGCTTATTCAGTCA
ATAATTTGTACATAATATCATAAAATTCTCCAATATACAAAATCATTACC
GAACCAAATATAAATGCAAGAAACATCTTATTTTACCAAAGACATTTTAT
ACTAAGATtgtcggtaaaataaaaattaagtttttaaaagtttttaatgt
CGAGGGCTCGGCCAGATACTTAGAAGAATAAATAGTTTGTTTTCTCTACT
AAACCATGACCATGTGGCAGACTTTTCTTAATTTGCTTTGAACTGACTTA
CAAATCATTAGTCACGTAGAGTTTTTCCATTTTAATATCATATCAATGAA
ATAACTTACTTTAGGAGCTGTAACATTAAAACGAGTGTTGAACAATTTGT
A
Run BLAST on NCBI

transcript from alignment at sc0000119:393308..393921+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011008 ID=TCONS_00011008|Name=TCONS_00011008|organism=Clytia hemisphaerica|type=transcript|length=614bp|location=Sequence derived from alignment at sc0000119:393308..393921+ (Clytia hemisphaerica)
ccaGCCTTGAATTTGTCACCATCAGGAAACGATTAGAAAATTACTTTGAA
AGActaaaatttaagaagaaaGTCCTTCGATTGCTAGACTAAATATGAAA
CATGTCTTTCATAGGTGATTAAATACGTgtaaaaagaatataaaaacTTT
CCTACACCCTACCTAGCCTAGAATAATAAAAATGGCTGCTTATTCAGTCA
ATAATTTGTACATAATATCATAAAATTCTCCAATATACAAAATCATTACC
GAACCAAATATAAATGCAAGAAACATCTTATTTTACCAAAGACATTTTAT
ACTAAGATtgtcggtaaaataaaaattaagtttttaaaagtttttaatgt
cGAGGNTTTTTATACTAAGACtgtcggtaaaataaaaattaagtttttaa
aagtttttaaggtCGAGGGCTCGGCCAGATACTTAGAAGAATAAATAGTT
TGTTTTCTCTACTAAACCATGACCATGTGGCAGACTTTTCTTAATTTGCT
TTGAACTGACTTACAAATCATTAGTCACGTAGAGTTTTTCCATTTTAATA
TCATATCAATGAAATAACTTACTTTAGGAGCTGTAACATTAAAACGAGTG
TTGAACAATTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006169XLOC_006169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011008-exon-sc0000119-1491911889:393308..393655TCONS_00011008-exon-sc0000119-1491911889:393308..393655Clytia hemisphaericaexon
TCONS_00011008-exon-sc0000119-1510915933:393308..393655TCONS_00011008-exon-sc0000119-1510915933:393308..393655Clytia hemisphaericaexon
TCONS_00011008-exon-sc0000119-1575043694:393308..393655TCONS_00011008-exon-sc0000119-1575043694:393308..393655Clytia hemisphaericaexon
TCONS_00011008-exon-sc0000119-1491911889:393719..393921TCONS_00011008-exon-sc0000119-1491911889:393719..393921Clytia hemisphaericaexon
TCONS_00011008-exon-sc0000119-1510915933:393719..393921TCONS_00011008-exon-sc0000119-1510915933:393719..393921Clytia hemisphaericaexon
TCONS_00011008-exon-sc0000119-1575043694:393719..393921TCONS_00011008-exon-sc0000119-1575043694:393719..393921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:393308..393921 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.141946	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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