|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010984 ID=TCONS_00010984|Name=TCONS_00010984|organism=Clytia hemisphaerica|type=transcript|length=809bp
CAAGACATCAAAAAACAACTCGTTGCACACAGCAGACCGAACAGGCATTA
TCAAGTTGAAAAAGTTCTTGAACTTTCAAGTATTTCTACATCAACAAGAG
AGACGATAGAAAAATGGCTTCTTTGAAAATCGTTTGTATCATGTCATCTG
TTCGTGATGGACGAATGGCTGAGCGAATGAGAAATCTgattcaaaaacaa
ttcaacGAAGTCTTGACACCCAAAGGACACACCATTCATTTTGTCGatcC
TGAGGAATACGATCTACCGGTTTTAAAAACACCTCTTCACTTCTACCCTG
ATCAATCGAAAGCACCAGAAAAATTACGACAATTGAACGACATTGTCATT
TCTGCTGATGCATACATTATTTTGACCGCTGAATACAATCGAAGCATGCC
ACCTGCTTTGACCAACTTGATCAACCACTTGCCACCACCGAGCTTCGAAT
TCAAAGTTAGCGGTATGGTTGGTTATTCGCAAGGAAATCTTGGAGGAGTA
ATGGCCATGACAGCTGCACGACCATTCTTGTCTGAAATGGGATGTCTACC
AGTCAAACATTTTGTTGTCATCCCCTATGTTCAAAACGAAGTGAAAGAAG
ATGGGACAACAGCAAACACGCACATTCACGAAAGTATCAAGAAATTACTC
AATCAAGTCGAATGGTGGGCCCAAGCTGCCAAAACCCAACGAGCTACTGG
AACACCCGAATTAACTTTCAAAATGTATCGCTAATTTCATACTACTTAAT
CATTTGTAAATATTagaataaaatgaatttgaagacGAGAAGATATCTTA
AAGTTACAA Run BLAST on NCBI transcript from alignment at sc0000119:288647..290591+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010984 ID=TCONS_00010984|Name=TCONS_00010984|organism=Clytia hemisphaerica|type=transcript|length=1945bp|location=Sequence derived from alignment at sc0000119:288647..290591+ (Clytia hemisphaerica)
CAAGACATCAAAAAACAACTCGTTGCACACAGCAGACCGAACAGGCATTA
TCAAGTTGAAAAAGTTCTTGAACTTTCAAGTATTTCTACATCAACAAGAG
AGACGATAGAAAAATGGCTTCTTTGAAAATCGTTTGTATCATGTCATCTG
TTCGTGATGGACGAATGGCTGAGCGAATGAGAAATCTgattcaaaaacaa
ttcaacGAAGTCTTGACACCCAAAGGACACACCATTCATTTTGTCGGTAA
GTGTGTGCTTCATTTACTAGTTTTTAGATCTAATTTCCTAACTTGAGCCA
TTTAGTACGAATATCTCCTCTAAGTTAAGACAGAGACAGAGACACAAAAA
ATTGGATTTAGAGTTTAGATTCATCATTGTTAATTTGTCACAAGAATTGT
CAACTACCTTTAGCGATATAAGGTTATCCTGCTCTCAACAGCTAGCTGTC
TCTAACTAGATGTATCTTATGATTCCtgcaaaatttagattttaaaagga
gttttttttttctttagatcCTGAGGAATACGATCTACCGGTTTTAAAAA
CACCTCTTCACTTCTACCCTGATCAATCGAAAGCACCAGAAAAATTACGA
CAATTGAACGACATTGTCATTTCTGCTGATGCATACATTATTTTGACCGC
TGAATACAATCGAAGCATGCCACCTGCTTTGACCAACTTGATCAACCACT
TGCCACCACCGAGGTAAACCGTTTTGGATTTGTCTGCCTATACTCCAAAA
CAACAGCGAGGCCTTCAAAATTTTGGGATACAAATAAGTTTAATACCTCA
GGATTCTAAGCAATGCCAAAAATATTGTAGACACAAATGATTGGGGAAAT
TTTTTACTACATGTTGAAAGTTAAAACAACAGTTTGTCTTCATACAACGC
AAGAATGGTATTATTGACcaattatgaaaaagaaaaatctcacCTAAACC
TATGAATCTGATGTACAGTGGATTTTTTTCAAGACGTTATTTTTGCTTCG
AATCTAGGTCATTCCAACTCAACAAGTTGATTCAcggcccattcacgcat
tcgtGCGCAACCACCGGGAGCCTAGGAACGAATGATGACAAAATTTCTAA
TTAATTATCACTCTTTTCTATTTCAGCTTCGAATTCAAAGTTAGCGGTAT
GGTTGGTTATTCGCAAGGAAATCTTGGAGGAGTAATGGCCATGACAGCTG
CACGACCATTCTTGTCTGAAATGGGATGTCTACCAGTCAAACATTTTGTT
GTCATCCCCTATGTAAATCGAANTCCATTCTTGTCTGAAATGGGATGTCT
ACCAGTTAAACATTTTGTTGTTATCCCCTATGTAAGttgaaattaaactt
ttaacGTCTTTAAAACCATCCATTCTTGCCTTTGTGAACTATAAATGACT
AAAACCACCTAAGTGAATAGGGGCTTAAGCATACTTGAATTTAAGCAATT
TTTATCCTAATACAAGAGTATGGCAAAAAGGGAGGAAACTTTGTAGTAGA
TAGTTTTTAAATTTACGCGAGAGATTtggtttttttaataagaagttttc
aattttctgtCAAAGTTTTAACCATTTTGCATTACAAGGACTTGAGATTC
AAATTTCTATGGAAAAAATGTTAGCCTCATCTTGACCAACCTTGTTGATT
TTTGTCATTCAGAACGACTTTTTTGATATTCTCTAAACAAATATTCTCTT
TTCTTGGCCTTAAGGTTCAAAACGAAGTGAAAGAAGATGGGACAACAGCA
AACACGCACATTCACGAAAGTATCAAGAAATTACTCAATCAAGTCGAATG
GTGGGCCCAAGCTGCCAAAACCCAACGAGCTACTGGAACACCCGAATTAA
CTTTCAAAATGTATCGCTAATTTCATACTACTTAATCATTTGTAAATATT
agaataaaatgaatttgaagacGAGAAGATATCTTAAAGTTACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010984-exon-sc0000119-1491911889:288647..288892 | TCONS_00010984-exon-sc0000119-1491911889:288647..288892 | Clytia hemisphaerica | exon |
| TCONS_00010984-exon-sc0000119-1510915933:288647..288892 | TCONS_00010984-exon-sc0000119-1510915933:288647..288892 | Clytia hemisphaerica | exon |
| TCONS_00010984-exon-sc0000119-1575043694:288647..288892 | TCONS_00010984-exon-sc0000119-1575043694:288647..288892 | Clytia hemisphaerica | exon |
| TCONS_00010984-exon-sc0000119-1491911889:289164..289359 | TCONS_00010984-exon-sc0000119-1491911889:289164..289359 | Clytia hemisphaerica | exon |
| TCONS_00010984-exon-sc0000119-1510915933:289164..289359 | TCONS_00010984-exon-sc0000119-1510915933:289164..289359 | Clytia hemisphaerica | exon |
| TCONS_00010984-exon-sc0000119-1575043694:289164..289359 | TCONS_00010984-exon-sc0000119-1575043694:289164..289359 | Clytia hemisphaerica | exon |
| TCONS_00010984-exon-sc0000119-1491911889:289773..289908 | TCONS_00010984-exon-sc0000119-1491911889:289773..289908 | Clytia hemisphaerica | exon |
| TCONS_00010984-exon-sc0000119-1510915933:289773..289908 | TCONS_00010984-exon-sc0000119-1510915933:289773..289908 | Clytia hemisphaerica | exon |
| TCONS_00010984-exon-sc0000119-1575043694:289773..289908 | TCONS_00010984-exon-sc0000119-1575043694:289773..289908 | Clytia hemisphaerica | exon |
| TCONS_00010984-exon-sc0000119-1491911889:290361..290591 | TCONS_00010984-exon-sc0000119-1491911889:290361..290591 | Clytia hemisphaerica | exon |
| TCONS_00010984-exon-sc0000119-1510915933:290361..290591 | TCONS_00010984-exon-sc0000119-1510915933:290361..290591 | Clytia hemisphaerica | exon |
| TCONS_00010984-exon-sc0000119-1575043694:290361..290591 | TCONS_00010984-exon-sc0000119-1575043694:290361..290591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000119 | supercontig | sc0000119:288647..290591 + |
Blast
The following BLAST results are available for this feature:
|
