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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010961 ID=TCONS_00010961|Name=TCONS_00010961|organism=Clytia hemisphaerica|type=transcript|length=1422bp
GTCGTTTGTATCGCATtttctggtcattaaaatatctCTAGCGTTCCGTC
TTTTTGATGAAAAGTGTCGAAAATTATGTTGGTTATGGAATTAACAAATT
GATGTAATAGTACTGCACAAGAGTTTCACTTAAAGAATTTCATGAAACCA
TATCTGATTGATGATTTCGAAAAAATGAGTATGAAATGGATGTTGGTTTT
TCTTGTGCTGTTTTCTTTGTGGAATTTTAGGCCAGCAAATGCTAAAAGtt
ACAACACATCATCTGCAAAACCGACAAAAGCAAAATGCTGGATACTGGTG
AAGCGATATCGACCTGGGACAAAGACAACAACATCAATCAGAAACTTGTT
AATATATTGTTGGCGAGCATACAAAATACGTCTCCCTACCACAACAAGAA
AGCCAGCCACTACAATTGTGAAGCCTACATCAAAGCTACCTGCTAGAAAC
TCAACTACGCCTCCAAAGAAAACAACCAATATTAGAACCACCAAGAGAAA
ACTGAGACGAACGCCGATAAAACGAAGAACTACATCGTTCCCAGTGCGTC
AAAGACAGAACGTCGATGACAATGAAGACCAATCAAAAACAGTTCTTTAC
ATTGGACTTGGAGTTGCATGTGGAGTCATCATTCTCCTTTGCACGATCCT
tctcataatattttgcaaaatCAAGAAATTATGTTGCTGGAAAGTCACTC
CaccaaaaaataaacaaatcccaACTATCCAACATCAGAAACCAAGTATC
aaacaaaataataattatgCGGAACTCGATATATCCGGTGGGACTATAGA
TCGGTCGTACGCAACACTGAATGTAGACCGGGATAGGCTTTACACGGAAA
TCAACAACGGGCCTCCTGCTCAAAAAGGCAGTAAAGACAAGAGTTTGAAC
CATTACGAAATCATGTCTGATTCTAtgaaaaattccaataaaaCTTCTCA
AGAGAGTCATTATGAGATCCCGAACGACAGTATCAAAGTTGTGACAAAGG
AGGGACAGAAAATAGCGATACGTTCGACGTCTCATCAACCAAACATGTTG
GATAATGGTGTCGAATATGCTGAATATGATGACAAAGACTATGACAATGA
TTATATAGATTTGAccaataaatgattttttaccGGACAATGTCCGAAAA
TTGGCATCAGAAATTGACACATTGAATAAACAACTCGTTTCATATAGATT
TGTGATCAGAAGGTTATATTCATGATAAGTCtgtaaaattaaatattata
gAAAATATTGCCATTCTTTCTTATGGAATGAAACAGAAATTCGACAATTG
ACCTGtatttattaaattaaaattttgaaatttatagtATAGTATTGtaa
gcattattttttgaaGTTATGTCTTTGTACAAAGTTTTCCTTAATTAATA
ACATGCTAATTATTTCTCGCCA Run BLAST on NCBI protein sequence of TCONS_00010961-protein >TCONS_00010961-protein ID=TCONS_00010961-protein|Name=TCONS_00010961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MKPYLIDDFEKMSMKWMLVFLVLFSLWNFRPANAKSYNTSSAKPTKAKCW
ILVKRYRPGTKTTTSIRNLLIYCWRAYKIRLPTTTRKPATTIVKPTSKLP
ARNSTTPPKKTTNIRTTKRKLRRTPIKRRTTSFPVRQRQNVDDNEDQSKT
VLYIGLGVACGVIILLCTILLIIFCKIKKLCCWKVTPPKNKQIPTIQHQK
PSIKQNNNYAELDISGGTIDRSYATLNVDRDRLYTEINNGPPAQKGSKDK
SLNHYEIMSDSMKNSNKTSQESHYEIPNDSIKVVTKEGQKIAIRSTSHQP
NMLDNGVEYAEYDDKDYDNDYIDLTNK Run BLAST on NCBI transcript from alignment at sc0000119:204207..207067+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010961 ID=TCONS_00010961|Name=TCONS_00010961|organism=Clytia hemisphaerica|type=transcript|length=2861bp|location=Sequence derived from alignment at sc0000119:204207..207067+ (Clytia hemisphaerica)
GTCGTTTGTATCGCATtttctggtcattaaaatatctCTAGCGTTCCGTC
TTTTTGATGAAAAGTGTCGAAAATTATGTTGGTTATGGAATTAACAAATT
GATGTAATAGTACTGCACAAGAGTTTCACTTAAAGAATTTCATGAAACCA
TATCTGATTGATGATTTCGAAAAAATGAGTATGAAATGGATGTTGGTTTT
TCTTGTGCTGTTTTCTTTGTGGAATTTTAGGCCAGCAAATGCTAAAAGGT
aaagttcattttttacttcattcGAAACGCCATTAAATTTTATGTTCACT
CTTAGAAAAAGTTGAACCGAATTCTCGCATAaattttaacaaacttttac
TGTCTTTTACAATTTCTCAGAATCTAAGAATTCTACTGACCTATGATATT
TTGACGTActgatatctttttttttattagttACAACACATCATCTGCAA
AACCGACAAAAGCAAAATGCTGGATACTGGTGAAGCGATATCGACCTGGG
TAAGCACAAGATACAATTTTACACGCAATATTACATGATCATTTGCCGCA
TATTCCGAGTAATACTTTGTTAAATAAGAAATCATTAGTCATCAAATTTG
GGTTAAAGTGGGTTTTCTACCCATTTTAAGGGGTTAAAGTCATGTCAGGA
AATGTACGGTCTTATATGTTCTCAAAATGATAAATCTTAACAAAGCCAGC
TGTGTCAAAACAGCTAGGAAAAGCATTGCATTTTTTGTAGTATATAGTGG
CTTTAAAAAGGGTGTTTGCTAATATAAGtacaaaaaaagtttcatttttt
tttctcccaACATTCAGGACAAAGACAACAACATCAATCAGAAACTTGTT
AATATATTGTTGGCGAGCATACAAAATACGTCTCCCTACCACAACAAGAA
AGCCAGCCACTACAATTGTGAAGCCTACATCAAAGCTACCTGCTAGAAAC
TCAACTACGCCTCCAAAGAAAACAACCAATATTAGAACCACCAAGAGAAA
ACTGAGACGAACGCCGATAAAACGTATGTATACCCTATTCTAGATAGATA
GAATCGACATTtgacgtggatagcccagtaatctaggacttaaAGGCAGT
ATTTCGATTGTTCTCACAGGGTCTAAGGCCAGCCGCCTCGGCTGTCAGTG
AACTGAGCGGACCATTTGAAGGAGCGGGAATTCGAACAGTAGATCCCTAG
TTTGTAACCCATCCTCTTTTGACCACTTGGATTTTACGCCCTTAGCTTTT
ATAACAAATTTCCAAATGCGGAACATGGAGTGGTTTATTAGTTGAAGTTG
TGTATATAACCCTATGGAGCTCCGAGGCAGATTCTTCTAATGGGCCTATT
TGAAGAGATGCATGTTTCGTTTCTggagaaaatcatttttgagtACTCGT
TATGTTTGTCATGCTTTGGGTGTCCCTTCTGTCACTAAATCATTTTAAGC
CTTCAGTGTTTTCTCACAAATTCTAAGCTAAGTAAAGCACCTTGAGAAAA
GAATATAAGGGGGAAAGTAAATGTCAGAAATTTCTGACAACTAACTTTCT
AAATGGAGGGTTCTCCAGTAATTTTGAACCGAGACTTTGAACACGCTTGA
ATAAAGTATTTGCGTAATTTTTTCCAAGCAGAATAATAATTGAAAAGTGC
AGATATTAGTGGCGGGTCTGAGGCGGGCTCAAGATTTATGGCGGGGAGTG
TTTGTTTCATCCATATTCCTATATGGAAAGCAGCACTCTTCCTCACAAAT
TTTGAACCTGTTTCAGATCTGCCACTTTCATGCAAATGTCTCAGATCTGC
CATCAGATCAGCAAGCACAATCATGACAATAATATTAAATCAACCACTTA
TATTCAAACACTAGTAAACACTATGTCCTGTCAACGTACATAGCACGTCC
ATCCAGCATGCCGGTTCGCCCATAATGTAGCATATTATTCTATAGCACTA
TATTTTTTACAGGAAGAACTACATCGTTCCCAGTGCGTCAAAGACAGAAC
GTCGATGACAATGAAGACCAATCAAAAACAGTTCTTTACATTGGACTTGG
AGTTGCATGTGGAGTCATCATTCTCCTTTGCACGATCCTtctcataatat
tttgcaaaatCAAGAAATTATGTTGCTGGAAAGTCACTCCaccaaaaaat
aaacaaatcccaACTATCCAACATCAGAAACCAAGTATCaaacaaaataa
taattatgCGGAACTCGATATATCCGGTGGGACTATAGATCGGTCGTACG
CAACACTGAATGTAGACCGGGATAGGCTTTACACGGAAATCAACAACGGG
CCTCCTGCTCAAAAAGGCAGTAAAGACAAGAGTTTGAACCATTACGAAAT
CATGTCTGATTCTAtgaaaaattccaataaaaCTTCTCAAGAGAGTCATT
ATGAGATCCCGAACGACAGTATCAAAGTTGTGACAAAGGAGGGACAGAAA
ATAGCGATACGTTCGACGTCTCATCAACCAAACATGTTGGATAATGGTGT
CGAATATGCTGAATATGATGACAAAGACTATGACAATGATTATATAGATT
TGAccaataaatgattttttaccGGACAATGTCCGAAAATTGGCATCAGA
AATTGACACATTGAATAAACAACTCGTTTCATATAGATTTGTGATCAGAA
GGTTATATTCATGATAAGTCtgtaaaattaaatattatagAAAATATTGC
CATTCTTTCTTATGGAATGAAACAGAAATTCGACAATTGACCTGtattta
ttaaattaaaattttgaaatttatagtATAGTATTGtaagcattattttt
tgaaGTTATGTCTTTGTACAAAGTTTTCCTTAATTAATAACATGCTAATT
ATTTCTCGCCA Coding sequence (CDS) from alignment at sc0000119:204207..207067+ >TCONS_00010961 ID=TCONS_00010961|Name=TCONS_00010961|organism=Clytia hemisphaerica|type=CDS|length=3936bp|location=Sequence derived from alignment at sc0000119:204207..207067+ (Clytia hemisphaerica)
ATGAAACCATATCTGATTGATGATTTCGAAAAAATGAGTATGAAATGGAT
GTTGGTTTTTCTTGTGCTGTTTTCTTTGTGGAATTTTAGGCCAGCAAATG
CTAAAAGttACAACACATCATCTGCAAAACCGACAAAAGCAAAATGCTGG
ATACTGGTGAAGCGATATCGACCTGGGACAAAGACAACAACATCAATCAG
AAACTTGTTAATATATTGTTGGCGAGCATACAAAATACGTCTCCCTACCA
CAACAAGAAAGCCAGCCACTACAATTGTGAAGCCTACATCAAAGCTACCT
GCTAGAAACTCAACTACGCCTCCAAAGAAAACAACCAATATTAGAACCAC
CAAGAGAAAACTGAGACGAACGCCGATAAAACGAAGAACTACATCGTTCC
CAGTGCGTCAAAGACAGAACGTCGATGACAATGAAGACCAATCAAAAACA
GTTCTTTACATTGGACTTGGAGTTGCATGTGGAGTCATCATTCTCCTTTG
CACGATCCTtctcataatattttgcaaaatCAAGAAATTATGTTGCTGGA
AAGTCACTCCaccaaaaaataaacaaatcccaACTATCCAACATCAGAAA
CCAAGTATCaaacaaaataataattatgCGGAACTCGATATATCCGGTGG
GACTATAGATCGGTCGTACGCAACACTGAATGTAGACCGGGATAGGCTTT
ACACGGAAATCAACAACGGGCCTCCTGCTCAAAAAGGCAGTAAAGACAAG
AGTTTGAACCATTACGAAATCATGTCTGATTCTAtgaaaaattccaataa
aaCTTCTCAAGAGAGTCATTATGAGATCCCGAACGACAGTATCAAAGTTG
TGACAAAGGAGGGACAGAAAATAGCGATACGTTCGACGTCTCATCAACCA
AACATGTTGGATAATGGTGTCGAATATGCTGAATATGATGACAAAGACTA
TGACAATGATTATATAGATTTGAccaataaatgaATGAAACCATATCTGA
TTGATGATTTCGAAAAAATGAGTATGAAATGGATGTTGGTTTTTCTTGTG
CTGTTTTCTTTGTGGAATTTTAGGCCAGCAAATGCTAAAAGttACAACAC
ATCATCTGCAAAACCGACAAAAGCAAAATGCTGGATACTGGTGAAGCGAT
ATCGACCTGGGACAAAGACAACAACATCAATCAGAAACTTGTTAATATAT
TGTTGGCGAGCATACAAAATACGTCTCCCTACCACAACAAGAAAGCCAGC
CACTACAATTGTGAAGCCTACATCAAAGCTACCTGCTAGAAACTCAACTA
CGCCTCCAAAGAAAACAACCAATATTAGAACCACCAAGAGAAAACTGAGA
CGAACGCCGATAAAACGAAGAACTACATCGTTCCCAGTGCGTCAAAGACA
GAACGTCGATGACAATGAAGACCAATCAAAAACAGTTCTTTACATTGGAC
TTGGAGTTGCATGTGGAGTCATCATTCTCCTTTGCACGATCCTtctcata
atattttgcaaaatCAAGAAATTATGTTGCTGGAAAGTCACTCCaccaaa
aaataaacaaatcccaACTATCCAACATCAGAAACCAAGTATCaaacaaa
ataataattatgCGGAACTCGATATATCCGGTGGGACTATAGATCGGTCG
TACGCAACACTGAATGTAGACCGGGATAGGCTTTACACGGAAATCAACAA
CGGGCCTCCTGCTCAAAAAGGCAGTAAAGACAAGAGTTTGAACCATTACG
AAATCATGTCTGATTCTAtgaaaaattccaataaaaCTTCTCAAGAGAGT
CATTATGAGATCCCGAACGACAGTATCAAAGTTGTGACAAAGGAGGGACA
GAAAATAGCGATACGTTCGACGTCTCATCAACCAAACATGTTGGATAATG
GTGTCGAATATGCTGAATATGATGACAAAGACTATGACAATGATTATATA
GATTTGAccaataaatgaATGAAACCATATCTGATTGATGATTTCGAAAA
AATGAGTATGAAATGGATGTTGGTTTTTCTTGTGCTGTTTTCTTTGTGGA
ATTTTAGGCCAGCAAATGCTAAAAGttACAACACATCATCTGCAAAACCG
ACAAAAGCAAAATGCTGGATACTGGTGAAGCGATATCGACCTGGGACAAA
GACAACAACATCAATCAGAAACTTGTTAATATATTGTTGGCGAGCATACA
AAATACGTCTCCCTACCACAACAAGAAAGCCAGCCACTACAATTGTGAAG
CCTACATCAAAGCTACCTGCTAGAAACTCAACTACGCCTCCAAAGAAAAC
AACCAATATTAGAACCACCAAGAGAAAACTGAGACGAACGCCGATAAAAC
GAAGAACTACATCGTTCCCAGTGCGTCAAAGACAGAACGTCGATGACAAT
GAAGACCAATCAAAAACAGTTCTTTACATTGGACTTGGAGTTGCATGTGG
AGTCATCATTCTCCTTTGCACGATCCTtctcataatattttgcaaaatCA
AGAAATTATGTTGCTGGAAAGTCACTCCaccaaaaaataaacaaatccca
ACTATCCAACATCAGAAACCAAGTATCaaacaaaataataattatgCGGA
ACTCGATATATCCGGTGGGACTATAGATCGGTCGTACGCAACACTGAATG
TAGACCGGGATAGGCTTTACACGGAAATCAACAACGGGCCTCCTGCTCAA
AAAGGCAGTAAAGACAAGAGTTTGAACCATTACGAAATCATGTCTGATTC
TAtgaaaaattccaataaaaCTTCTCAAGAGAGTCATTATGAGATCCCGA
ACGACAGTATCAAAGTTGTGACAAAGGAGGGACAGAAAATAGCGATACGT
TCGACGTCTCATCAACCAAACATGTTGGATAATGGTGTCGAATATGCTGA
ATATGATGACAAAGACTATGACAATGATTATATAGATTTGAccaataaat
gaATGAAACCATATCTGATTGATGATTTCGAAAAAATGAGTATGAAATGG
ATGTTGGTTTTTCTTGTGCTGTTTTCTTTGTGGAATTTTAGGCCAGCAAA
TGCTAAAAGttACAACACATCATCTGCAAAACCGACAAAAGCAAAATGCT
GGATACTGGTGAAGCGATATCGACCTGGGACAAAGACAACAACATCAATC
AGAAACTTGTTAATATATTGTTGGCGAGCATACAAAATACGTCTCCCTAC
CACAACAAGAAAGCCAGCCACTACAATTGTGAAGCCTACATCAAAGCTAC
CTGCTAGAAACTCAACTACGCCTCCAAAGAAAACAACCAATATTAGAACC
ACCAAGAGAAAACTGAGACGAACGCCGATAAAACGAAGAACTACATCGTT
CCCAGTGCGTCAAAGACAGAACGTCGATGACAATGAAGACCAATCAAAAA
CAGTTCTTTACATTGGACTTGGAGTTGCATGTGGAGTCATCATTCTCCTT
TGCACGATCCTtctcataatattttgcaaaatCAAGAAATTATGTTGCTG
GAAAGTCACTCCaccaaaaaataaacaaatcccaACTATCCAACATCAGA
AACCAAGTATCaaacaaaataataattatgCGGAACTCGATATATCCGGT
GGGACTATAGATCGGTCGTACGCAACACTGAATGTAGACCGGGATAGGCT
TTACACGGAAATCAACAACGGGCCTCCTGCTCAAAAAGGCAGTAAAGACA
AGAGTTTGAACCATTACGAAATCATGTCTGATTCTAtgaaaaattccaat
aaaaCTTCTCAAGAGAGTCATTATGAGATCCCGAACGACAGTATCAAAGT
TGTGACAAAGGAGGGACAGAAAATAGCGATACGTTCGACGTCTCATCAAC
CAAACATGTTGGATAATGGTGTCGAATATGCTGAATATGATGACAAAGAC
TATGACAATGATTATATAGATTTGAccaataaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010961-exon-sc0000119-1491911889:204207..204454 | TCONS_00010961-exon-sc0000119-1491911889:204207..204454 | Clytia hemisphaerica | exon |
| TCONS_00010961-exon-sc0000119-1510915933:204207..204454 | TCONS_00010961-exon-sc0000119-1510915933:204207..204454 | Clytia hemisphaerica | exon |
| TCONS_00010961-exon-sc0000119-1575043694:204207..204454 | TCONS_00010961-exon-sc0000119-1575043694:204207..204454 | Clytia hemisphaerica | exon |
| TCONS_00010961-exon-sc0000119-1491911889:204637..204705 | TCONS_00010961-exon-sc0000119-1491911889:204637..204705 | Clytia hemisphaerica | exon |
| TCONS_00010961-exon-sc0000119-1510915933:204637..204705 | TCONS_00010961-exon-sc0000119-1510915933:204637..204705 | Clytia hemisphaerica | exon |
| TCONS_00010961-exon-sc0000119-1575043694:204637..204705 | TCONS_00010961-exon-sc0000119-1575043694:204637..204705 | Clytia hemisphaerica | exon |
| TCONS_00010961-exon-sc0000119-1491911889:205024..205229 | TCONS_00010961-exon-sc0000119-1491911889:205024..205229 | Clytia hemisphaerica | exon |
| TCONS_00010961-exon-sc0000119-1510915933:205024..205229 | TCONS_00010961-exon-sc0000119-1510915933:205024..205229 | Clytia hemisphaerica | exon |
| TCONS_00010961-exon-sc0000119-1575043694:205024..205229 | TCONS_00010961-exon-sc0000119-1575043694:205024..205229 | Clytia hemisphaerica | exon |
| TCONS_00010961-exon-sc0000119-1491911889:206169..207067 | TCONS_00010961-exon-sc0000119-1491911889:206169..207067 | Clytia hemisphaerica | exon |
| TCONS_00010961-exon-sc0000119-1510915933:206169..207067 | TCONS_00010961-exon-sc0000119-1510915933:206169..207067 | Clytia hemisphaerica | exon |
| TCONS_00010961-exon-sc0000119-1575043694:206169..207067 | TCONS_00010961-exon-sc0000119-1575043694:206169..207067 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000119 | supercontig | sc0000119:204207..207067 + |
Blast
The following BLAST results are available for this feature:
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