TCONS_00010960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010960
Unique NameTCONS_00010960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010960 ID=TCONS_00010960|Name=TCONS_00010960|organism=Clytia hemisphaerica|type=transcript|length=913bp
CTTATAACTCTCATTTTGCGGTTATCTTAAGAAGAGTTACCTGGCATACC
TTTTAATATTGCTCAAGTAATGTGTAAGGCAACGCCTCACCAGAGTTGGC
AGatgtcgggtatgtgcggccCAGATCTTCGAAACTCCGGCCCTTTGAGG
TATTTTTCTTAGATTCCTCGATTCCCGACACCCATTTTTGCCTGAATGGT
AGGAAATCAACTGCTTTCAATTTTTAGGACGCTTTCACACTTTTCGACAA
GAAGGGAGATGACAAAGTCGAGAGTGTACAAATCATCGACATTTTACGAT
CACTTAAACTAAACCCGCTGACCTGCGATGTTGAAAAAGTCATCAAAGAT
TCCGGCTTAGAAGGCAATCGTGTCGATTTCCCAACTTTCGCTAGCATTTA
CGAACAATTCAAGAAACGACCTTCGATTGCAAACTATGATGACATGATTG
AAATGTTCAAATGTTTTGATCGTGAAGGAAGTAAAATGGTTTTCGGAGGT
GAATTTCGAATGGTTTTGGTCAACATGGGTGATAATATGAACCAGGAACA
GATTGAAAAAATGATCGCACCCAATGAAAATGCTGATGGGTATATCCCAT
ACGAATCACTATTGGACTTTGTTTTGGCAAAGTAAATGAAGCACCAAAAT
TCCGTGCTCAAAAACCTTTAATCTGAAATGCCTAAAATAAGAGCCCTGTG
GCTGAAAAATTGTAATTTATATGGAACTATGAGAATTTTCTTTGTACACG
CTGTAAAGGGAGTCATTAATACATGATTGAGTCAATGCATATCTGGCCCT
TGTATTGACCATTTGGTGTATCAATTTCTACCCGATAAAAAGTTATTATA
TTCTTAGTATTTAACGCACGCATATATGTCTTAAAATGATTTGATCAAAA
TATAGATAATGGT
Run BLAST on NCBI

transcript from alignment at sc0000119:199758..200670+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010960 ID=TCONS_00010960|Name=TCONS_00010960|organism=Clytia hemisphaerica|type=transcript|length=913bp|location=Sequence derived from alignment at sc0000119:199758..200670+ (Clytia hemisphaerica)
CTTATAACTCTCATTTTGCGGTTATCTTAAGAAGAGTTACCTGGCATACC
TTTTAATATTGCTCAAGTAATGTGTAAGGCAACGCCTCACCAGAGTTGGC
AGatgtcgggtatgtgcggccCAGATCTTCGAAACTCCGGCCCTTTGAGG
TATTTTTCTTAGATTCCTCGATTCCCGACACCCATTTTTGCCTGAATGGT
AGGAAATCAACTGCTTTCAATTTTTAGGACGCTTTCACACTTTTCGACAA
GAAGGGAGATGACAAAGTCGAGAGTGTACAAATCATCGACATTTTACGAT
CACTTAAACTAAACCCGCTGACCTGCGATGTTGAAAAAGTCATCAAAGAT
TCCGGCTTAGAAGGCAATCGTGTCGATTTCCCAACTTTCGCTAGCATTTA
CGAACAATTCAAGAAACGACCTTCGATTGCAAACTATGATGACATGATTG
AAATGTTCAAATGTTTTGATCGTGAAGGAAGTAAAATGGTTTTCGGAGGT
GAATTTCGAATGGTTTTGGTCAACATGGGTGATAATATGAACCAGGAACA
GATTGAAAAAATGATCGCACCCAATGAAAATGCTGATGGGTATATCCCAT
ACGAATCACTATTGGACTTTGTTTTGGCAAAGTAAATGAAGCACCAAAAT
TCCGTGCTCAAAAACCTTTAATCTGAAATGCCTAAAATAAGAGCCCTGTG
GCTGAAAAATTGTAATTTATATGGAACTATGAGAATTTTCTTTGTACACG
CTGTAAAGGGAGTCATTAATACATGATTGAGTCAATGCATATCTGGCCCT
TGTATTGACCATTTGGTGTATCAATTTCTACCCGATAAAAAGTTATTATA
TTCTTAGTATTTAACGCACGCATATATGTCTTAAAATGATTTGATCAAAA
TATAGATAATGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006160XLOC_006160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010960-exon-sc0000119-1491911889:199758..200670TCONS_00010960-exon-sc0000119-1491911889:199758..200670Clytia hemisphaericaexon
TCONS_00010960-exon-sc0000119-1510915933:199758..200670TCONS_00010960-exon-sc0000119-1510915933:199758..200670Clytia hemisphaericaexon
TCONS_00010960-exon-sc0000119-1575043694:199758..200670TCONS_00010960-exon-sc0000119-1575043694:199758..200670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:199758..200670 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0503945	0	0	0.0558236	0.0679598	0.0537028	0	0	0	0	0	0	0.0335158	0	0	0	0	0.131579	0	0	0.37174	0	0	0	1.57652	3.92127	0.0691009	0	0	0
Blast
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BLAST of TCONS_00010960 vs. Swiss-Prot (Human)
Match: MYL6B (Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.157e-25
Identity = 53/139 (38.13%), Postives = 83/139 (59.71%), Query Frame = 3 
Query:  222 F*DAFTLFDKKGDDKVESVQIIDILRSLKLNPLTCDVEKVI---KDSGLEGNRVDFPTFASIYEQFKKRPSIANYDDMIEMFKCFDREGSKMVFGGEFRMVLVNMGDNMNQEQIEKMIAPNENADGYIPYESLLDFVLA 629
            F +AF LFD+ GD K+   Q  D++R+L  NP   +V KV+   K   L+  RVDF TF  + +   K      Y+D +E F+ FD+EG+  V G E R VL  +G+ M +E++E ++A +E+++G I YE+ L  +L+
Sbjct:   69 FKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHILS 207
The following BLAST results are available for this feature:
BLAST of TCONS_00010960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL6B1.157e-2538.13Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=... [more]
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