TCONS_00010955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010955
Unique NameTCONS_00010955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length979

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010955 ID=TCONS_00010955|Name=TCONS_00010955|organism=Clytia hemisphaerica|type=transcript|length=979bp
taatttttttttcgcaaaagaacgattgttttttatttctgaatTATCTT
TATTTGTAGAAAATTCGATTGTGCGAATTTTCGAGATTCTGTCAAAGCTA
GGAAATTAATTGGCTACCATACCGCTGAAGTGGGTTTTGCCCTCCTCGTG
CGAAAAATGAAGCTCCTCTAACGTCGTTTTTCCTTTACAATACAGCGACA
TCTTTTAGTAACGTCTCAAATTCTAGAAATCACTGGTGCAAAGTTGAAGA
GGCCGTGGATTCATGTAGATTTCTTCAAAGataatgtttttctttgttca
CTATGGAGacACTGATGCTTTACTGTTGAATTCAAATTGCCAATGCAAGA
TTCTTTtggaaagaataaaaaaagcgtgtgctCTTAGAAGAGAAGAATTA
ATCGATATTGCGGACATGCAGGCTGTAGTTCAGAAGTTGAGTGATGCACC
AAAAAGTTCTTACGCAAGTAGCTACCTTCAATATCGTGCAAACTATGTAC
TCATCAAAATCATTAGTAAGTAACACATGTATCCCGAGAGACCCTTTTAG
ACCGACGACCGACGTTCGAAAAGCTATTCCAGTGGGACTGAAATATTTCT
ATGATTGCACTCTTCCCgaaaaaaatccgttcatggaccggtggaggatg
aattgtccagggatGCCCAAAAAAAGTCCTAAAAATTgcattgtccaggg
gtaaatctgcgatgtccaggggtaattcattgaaaaaataatatatccta
cACTCCCGATGAACGGATTtattctggaagagcccattaaaaCAAACACT
TCTGCTACAAAGGGATAATAATTTAGCGTTTCTTTCGTTCATCACCCTTG
AAGAGTACACTagtaacaaacttttttcattctTGTTTGGGTGATAAGAA
ATTAcctacagcacctgaccccgagaatgcagtaaaccccgagaatatag
gtttctcattttttagcgttgtagcccta
Run BLAST on NCBI

transcript from alignment at sc0000119:176458..178249+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010955 ID=TCONS_00010955|Name=TCONS_00010955|organism=Clytia hemisphaerica|type=transcript|length=1792bp|location=Sequence derived from alignment at sc0000119:176458..178249+ (Clytia hemisphaerica)
taatttttttttcgcaaaagaacgattgttttttatttctgaatTATCTT
TATTTGTAGAAAATTCGATTGTGCGAATTTTCGAGATTCTGTCAAAGCTA
GGAAATTAATTGGCTACCATACCGCTGAAGTGGGTTTTGCCCTCCTCGTG
CGAAAAATGAAGCTCCTCTAACGTCGTTTTTCCTTTACAATACAGCGACA
TCTTTTAGTAACGTCTCAAATTCTAGAAATCACTGGTGCAAAGTTGAAGA
GGCCGTGGATTCATGTAGATTTCTTCAAAGataatgtttttctttgttca
CTATGGAGGTTAGTATATTGACAGTCTACTATAGAATTTTTGATCTATAC
AACACAGATTTCATGAAATCTGAAATTGGGCTTTTcgcaattttgtattt
tattttatagacACTGATGCTTTACTGTTGAATTCAAATTGCCAATGCAA
GATTCTTTtggaaagaataaaaaaagcgtgtgctCTTAGAAGAGAAGGTA
CTGATTTTGTTCTTGTACACCAACTGAATGAGTTTGATGCACCGCATTGA
GTTTATAAGTGGAATCTTCAACCCTTCCCTAGcaagaaaaagtttaagtc
tCAACAAAGAATTTGGTCTCAAGATTTGCGCCGCGTTTAGAAAATGGATT
ATTGCGCTTTCTTTGTTCACGtggcatatttttcgaaatccacCGATATA
TTTCACTTATTTCTACGGCAATAGCAACACATTTCGTATTTTTTTCTTCG
TCTTATATTCCCAAAGttgaattattttgataaatgcaGGTTCGAATAAC
CGGCAGTCTACTGTAtttgtgtttacaagttttagttttttaggTAAGGT
AAAGATTTCAAATTGTGATTTATTGACACAAAGCGGTTTGGATGTTTTCA
AAATCACCTCTATTGATAAtacatatacacgttttttttttaagaaacta
gttttaccaagcagcctcaatgtttcttaagaaatcggccttttgagcct
taaatgtttcttacatgtttataaactttttaacataatcagcctcatgg
aaggctgggttggaaggttcttaaaaaaaccgaattaaaaaaagttattt
tctcattcccagcctcagcatgtttcttagatgtttcttagtttttaggc
attctgagccttatgtttcttaaaaaaaaaacgtgtaatacgTCCTGTTA
CATTGTAGAATTAATCGATATTGCGGACATGCAGGCTGTAGTTCAGAAGT
TGAGTGATGCACCAAAAAGTTCTTACGCAAGTAGCTACCTTCAATATCGT
GCAAACTATGTACTCATCAAAATCATTAGTAAGTAACACATGTATCCCGA
GAGACCCTTTTAGACCGACGACCGACGTTCGAAAAGCTATTCCAGTGGGA
CTGAAATATTTCTATGATTGCACTCTTCCCgaaaaaaatccgttcatgga
ccggtggaggatgaattgtccagggatGCCCAAAAAAAGTCCTAAAAATT
gcattgtccaggggtaaatctgcgatgtccaggggtaattcattgaaaaa
ataatatatcctacACTCCCGATGAACGGATTtattctggaagagcccat
taaaaCAAACACTTCTGCTACAAAGGGATAATAATTTAGCGTTTCTTTCG
TTCATCACCCTTGAAGAGTACACTagtaacaaacttttttcattctTGTT
TGGGTGATAAGAAATTAcctacagcacctgaccccgagaatgcagtaaac
cccgagaatataggtttctcattttttagcgttgtagcccta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006158XLOC_006158Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010955-exon-sc0000119-1491911889:176458..176765TCONS_00010955-exon-sc0000119-1491911889:176458..176765Clytia hemisphaericaexon
TCONS_00010955-exon-sc0000119-1510915933:176458..176765TCONS_00010955-exon-sc0000119-1510915933:176458..176765Clytia hemisphaericaexon
TCONS_00010955-exon-sc0000119-1575043694:176458..176765TCONS_00010955-exon-sc0000119-1575043694:176458..176765Clytia hemisphaericaexon
TCONS_00010955-exon-sc0000119-1491911889:176868..176954TCONS_00010955-exon-sc0000119-1491911889:176868..176954Clytia hemisphaericaexon
TCONS_00010955-exon-sc0000119-1510915933:176868..176954TCONS_00010955-exon-sc0000119-1510915933:176868..176954Clytia hemisphaericaexon
TCONS_00010955-exon-sc0000119-1575043694:176868..176954TCONS_00010955-exon-sc0000119-1575043694:176868..176954Clytia hemisphaericaexon
TCONS_00010955-exon-sc0000119-1491911889:177666..178249TCONS_00010955-exon-sc0000119-1491911889:177666..178249Clytia hemisphaericaexon
TCONS_00010955-exon-sc0000119-1510915933:177666..178249TCONS_00010955-exon-sc0000119-1510915933:177666..178249Clytia hemisphaericaexon
TCONS_00010955-exon-sc0000119-1575043694:177666..178249TCONS_00010955-exon-sc0000119-1575043694:177666..178249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:176458..178249 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.200879	0	0.421452	0.578286	1.01566	0.750865	0.92222	2.40187	1.23323	1.30595	0.717511	0	0.0978628	0	0.236666	0	0	0.763312	0.66601	0.481402	0	0.103816	0.358711	34.099	19.0074	2.55018	2.21315	0.835073	0.699408
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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