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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010949 ID=TCONS_00010949|Name=TCONS_00010949|organism=Clytia hemisphaerica|type=transcript|length=698bp
AATAACAGTGATTGCATGATAAAGCTGGTACTTACGAAAATCTGATCTCG
ACTTAAATCGCTACGATTTATCCCGCTTCGCCTCATGTGCCCAAACTTAT
TCATCACGTGCTCCACTAAAGCCCCTACAAATTGTTGGTACATCGAGTCC
AAATCATCTGCAAACTCGTTTTCCCAACAATACGCAATAAAATGACGTGA
TCTCTCAGCTTCAAACGTGTTTGCATCAATGTGGGTCACTTTACTGATAT
GAAGAGTGAAGTCAGCGTCAACCAGCGGATCACGTTCTAAATAGAATAAT
GTTTGCGAGCGTATCCTTGACGACGAGGTCGTAGCGTTTTGTGAGTTTCG
GCGCGCCATGGAGAACGTTctagttttttcttcttcgatgAATTTACTGC
GATACTTGATTTTCTTGCTGAGCATTTCCAAGACTTGAGATTGAAGTGCG
TGAAGTTTGGGGTTGGTTCTGCTCCATTCTTGATACGATTGTACTGTGTA
ATCTACCGGACATGATTCGTCCCCATTCTCCTTGCTGATCACGTGGTCAA
GTTTCTTGAGGATCGAAGTAACCTTTTAAGGGAAAGAAGAACATAGAATC
GTGGTAGACAACTCTCCAATGCAGGGCCCTCAGCGGTTGCTTTAATACTT
GAATAGGTTACGTTTGTATTTCCGTCGCGTGAATATAGAAGAAAAATA Run BLAST on NCBI transcript from alignment at sc0000119:77167..79323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010949 ID=TCONS_00010949|Name=TCONS_00010949|organism=Clytia hemisphaerica|type=transcript|length=2157bp|location=Sequence derived from alignment at sc0000119:77167..79323+ (Clytia hemisphaerica)
AATAACAGTGATTGCATGATAAAGCTGGTACTTACGAAAATCTGATCTCG
ACTTAAATCGCTACGATTTATCCCGCTTCGCCTCATGTGCCCAAACTTAT
TCATCACGTGCTCCACTAAAGCCCCTACAAATTGTTGGTACATCGAGTCC
AAATCATCTGCAAACTCGTTTTCCCAACAATACGCAATAAAATGACGTGA
TCTCTCAGCTTCAAACGTGTTTGCATCAATGTGGGTCACTTTACTGATAT
GAAGAGTGAAGTCAGCGTCAACCAGCGGATCACGTTCTAAATAGAATAAT
GTTTGCGAGCGTATCCTTGACGACGAGGTCGTAGCGTTTTGTGAGTTTCG
GCGCGCCATGGAGAACGTTctagttttttcttcttcgatgAATTTACTGC
GATACCTGGGAAAATGTGAAGGAAgatggaattttcaaattttcattttt
tatggagCGCCTcttttttcctaagaaaatatgACCAGTGGTGTACTTTT
TGGGTCACATTTTGTGAGGCTTGACCCaatgaaactttttttaaggaaCC
ACTTCGACCCACTTGATTTCAAGCCCCGAAGAGGCTAGATCAGAAACTCC
TGGGTGAGAAATGGAGCCACTtttttcccatccaaaacacgtgacccgtg
tttttcacgtaaaaaaaaaaatatatgtaggcAAACTTaagacttcactt
tttcttgcttgagaaaggttaaaaaggCAACTCTCTAGCTCCTTCGGGGT
TTCAAACACATTCCTTTGACCCCATCAAGACATCATGTTTAAAACTAGGG
CAAGAAAGGGCAAGAAATACGACCTTGTATACGTCAAAAAGTTATCAATC
ACACGAGAATAACAACAAGATGGAACAAAATGACGACCAAAATATCACCG
GCTGGTGTCTAGCGAACatgcgaaaaagaaaaataacattttcaaaataa
ttacttttccaGGAAACGTGAAATTTCCGAGTGAATGTTATATTCATTCC
AGTAGGCAAAGCGAAACTTCACTAAACCTACGCAGGTGTATTCCCGAATT
GAAGTGATCAACTTCAACACACGACTAATGAAACGTGAATTTAAGTTTAA
ATAGTGAAACTTCAAATTAAACTATAGATCTAAAACTAGATTTTTGAAGT
CACAGTCACTGCCTTATTGGTGACTAAATTCTTCCTCAATTAAGAAAGAT
TTGTTCTCTTCTGTCAAATAAATTCAGTGCAATCGTCCTGGTTGAAAAAA
AGACCGCTGAATCTAATCTGCATTGGAAAAGACATCTAACATATCCCCCT
AAACAatggaaataaataaaaataaaaataatttgtctcGGTTCTTCATT
TAATTCCCACTGGGGAAAAAATTCTCACTAGCCAGCGAGACAAGAGGaag
tatcttttcaacaaataaAATTGAGCTAGGGAAAAGAGTATGTTGTTAAC
TGTTAACAGGACTCAAATCTCCATTTAACATATACCAATCAAAGCTATCT
AGTATTACGTTACCCGATTTTAAAGTCTTTAACTTTAGTTAGAAAGTATC
AACACCCAACAGGGTATATCTGATAGCTAGAGTCGAAACTCCTAAGTAGG
TTTTTGCCATTTATTTTCTACATAAGCACGGTCCAAGTGGCTTTCAAATA
AACGCAGGATTGAAAGTAACATTTATTGccacaatttgaaaaaaaggtgC
TAGATTGAATCCGTCATCCGAAATCTTCACATTTTCTTGTTttggaaagg
ttgaagattgGCCACTACATAGCCTTGAAACTCAACGGTGAAACTCCACT
TAAACACAAGTCACATATCTGAATTTGCATTAAAGAATTTCTAAGAGAGA
CGAGCATTACATACTTGATTTTCTTGCTGAGCATTTCCAAGACTTGAGAT
TGAAGTGCGTGAAGTTTGGGGTTGGTTCTGCTCCATTCTTGATACGATTG
TACTGTGTAATCTACCGGACATGATTCGTCCCCATTCTCCTTGCTGATCA
CGTGGTCAAGTTTCTTGAGGATCGAAGTAACCTTTTAAGGGAAAGAAGAA
CATAGAATCGTGGTAGACAACTCTCCAATGCAGGGCCCTCAGCGGTTGCT
TTAATACTTGAATAGGTTACGTTTGTATTTCCGTCGCGTGAATATAGAAG
AAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010949-exon-sc0000119-1491911889:77167..77567 | TCONS_00010949-exon-sc0000119-1491911889:77167..77567 | Clytia hemisphaerica | exon |
| TCONS_00010949-exon-sc0000119-1510915933:77167..77567 | TCONS_00010949-exon-sc0000119-1510915933:77167..77567 | Clytia hemisphaerica | exon |
| TCONS_00010949-exon-sc0000119-1575043694:77167..77567 | TCONS_00010949-exon-sc0000119-1575043694:77167..77567 | Clytia hemisphaerica | exon |
| TCONS_00010949-exon-sc0000119-1491911889:79027..79323 | TCONS_00010949-exon-sc0000119-1491911889:79027..79323 | Clytia hemisphaerica | exon |
| TCONS_00010949-exon-sc0000119-1510915933:79027..79323 | TCONS_00010949-exon-sc0000119-1510915933:79027..79323 | Clytia hemisphaerica | exon |
| TCONS_00010949-exon-sc0000119-1575043694:79027..79323 | TCONS_00010949-exon-sc0000119-1575043694:79027..79323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000119 | supercontig | sc0000119:77167..79323 + |
Blast
The following BLAST results are available for this feature:
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