TCONS_00010948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010948
Unique NameTCONS_00010948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1960

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010948 ID=TCONS_00010948|Name=TCONS_00010948|organism=Clytia hemisphaerica|type=transcript|length=1960bp
atttttttaaccatgtgcttttgtCTATTTTAGAAATTTCTCGCTCATTT
GTACCCTTTGTGCTCAGCTGccttttttgtcgtttttcatcGTAGTAACG
AGAATTACTCAACCGTGAAACCGAGAATTTGAGAACAATAACATTCGCTA
TGAATGGAATGTTGAGAGAAAGAAATCGGCCAATCATATTGCGGTTTGAA
TTGATGAACCAATCAGGTTTTATTATTATGATGTAATGATTGTTCTTTTG
TTATGAAAATATGACGAGAAAGAGAGAAGGGGAGAACATATATAAATGCG
AGAATCTCAATTGAGTTCAGTTATAGAAAAAAGTCTGAATATcaacaaca
caaaaagttaCTTGAGCTAGTGAAACTACAGACAGCAAACATGATCTCCA
AATGCAATTGCCTCGAGATTACCGCCGAACTCGTTATCGAGAGTACACAT
ACATCAAGAATCATCTTGGACATTAGAGAACCAATGTTATTTGAAAAATC
GCACATCAAAGACTCTATCAATTTATTAACTTCAAGTTTATTATTGAGAA
GGTTACAACGTGGTTCGCTTACGATCTCTTGTTTACTACCAGAAAATGTT
GTTTTGCGATTGGAAAACGATTCATGCGACTCGATTGTATTATGCGACGA
AAATTCATCTACACAAGAAATGGGTCGTAATTTATCAATCATCGTCAACG
CTATGAAGAAATCATACCCACACAAGAACATCTATTTCTTAGAGAaaGGC
TTCGATCATTTCTGTGAAGAATATCCACAAGCTTGCTCATTCGATTATCC
AGTTTTGGAATCCAACCCACTCTCTATCAATTTGGTTCCAGACCTTTCAA
CAGACCCAACGGACAAAAACGTGTTTTCACCACACACCGACTTGTGCCCA
GTCTCCATCCTTCCCTACTTATACCTCGGTAGCGCAAACCATGCTTCTCA
ACAAGAACTCCTCGACAAGCTCGGTATCACAGCTATCTTAAACGTTTCAA
AAACAATCCCTTCAGCTTTCGCACACAGCTACAATTACAGAAACATCGCC
ATCGAAGATAACGCTCGTGAAAATATCTCTTCACATTTCGACGACGCCAT
CAACTTTATCGAAGATGTCAACAACCGTGGTGGCCGCGTGCTCGTTCACT
GTCACGCTGGCATCTCACGCTCAGCAACCATCTGCATCGCTTACTTGATG
AGACAAAAAGGTTTCTCACTTGACGAAGCTTACGAATACACCAAAAAACG
CAGATCagctatttcaccaaattttAATTTCCTTGGACAATTACTCGCTT
TTGAACGCGAATTGAAAGAACAACACcaacaaaacaataatatcaccaCC
GCTCCATCAAAACGCCCAGCTACAGCTAAATGTTTCCCACCAAAGCTTAC
ATTAAACTTTAACACAAAACCACCAATGACATCGCAAGCTTTCgagaaaa
acactgaattttTCACTTATTCACCGATGCCCAAAAACTGCATCAGCTTT
TTCAACGGATCTGAAATGTCATCGCCCTGTCTCCCTTTGATGACGCCTTC
ATGAAAAGGGAGCTTGGTACTTTTTATAACACTTATGTGTTGagtttttt
atatcttttgttTGTTAAAAGTTACATTATCTTGTATTTTAGCTCGCCTT
TCTTTTTATGTCATATATCTGAAGCTCTTCCGTTTTTTGTCGAAAGAGTC
GTGAGGCCGAGTTAAACTGAGttgcgtttttttcatttttgtgtttttta
ttggagtaaaaagagaaaatttattGATTTGTACATATATACGCCCTGAA
GTTTATATTTAGATAactatttattacatttttttgaaagaatttgttta
tattaaaaaaggaaccaacaacaaaaataacaaaaaaaattgaaagaaaa
atttctgaATCCGTATAAATGCACACGTGTACTTTTATTCTTCCGGAATT
CTCGACTTTT
Run BLAST on NCBI

protein sequence of TCONS_00010948-protein

>TCONS_00010948-protein ID=TCONS_00010948-protein|Name=TCONS_00010948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MISKCNCLEITAELVIESTHTSRIILDIREPMLFEKSHIKDSINLLTSSL
LLRRLQRGSLTISCLLPENVVLRLENDSCDSIVLCDENSSTQEMGRNLSI
IVNAMKKSYPHKNIYFLEKGFDHFCEEYPQACSFDYPVLESNPLSINLVP
DLSTDPTDKNVFSPHTDLCPVSILPYLYLGSANHASQQELLDKLGITAIL
NVSKTIPSAFAHSYNYRNIAIEDNARENISSHFDDAINFIEDVNNRGGRV
LVHCHAGISRSATICIAYLMRQKGFSLDEAYEYTKKRRSAISPNFNFLGQ
LLAFERELKEQHQQNNNITTAPSKRPATAKCFPPKLTLNFNTKPPMTSQA
FEKNTEFFTYSPMPKNCISFFNGSEMSSPCLPLMTPS
Run BLAST on NCBI

transcript from alignment at sc0000119:59984..62661+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010948 ID=TCONS_00010948|Name=TCONS_00010948|organism=Clytia hemisphaerica|type=transcript|length=2678bp|location=Sequence derived from alignment at sc0000119:59984..62661+ (Clytia hemisphaerica)
atttttttaaccatgtgcttttgtCTATTTTAGAAATTTCTCGCTCATTT
GTACCCTTTGTGCTCAGCTGccttttttgtcgtttttcatcGTAGTAACG
AGAATTACTCAACCGTGAAACCGAGAATTTGAGAACAATAACATTCGCTA
TGAATGGAATGTTGAGAGAAAGAAATCGGCCAATCATATTGCGGTTTGAA
TTGATGAACCAATCAGGTTTTATTATTATGATGTAATGATTGTTCTTTTG
TTATGAAAATATGACGAGAAAGAGAGAAGGGGAGAACATATATAAATGCG
AGAATCTCAATTGAGTTCAGTTATAGAAAAAAGTCTGAATATcaacaaca
caaaaagttaCTTGAGCTAGTGAAACTACAGACAGCAAACATGATCTCCA
AATGCAATTGCCTCGAGATTACCGCCGAACTCGTTATCGAGAGTACACAT
ACATCAAGAATCATCTTGGACATTAGAGAACCAATGTTATTTGAAAAATC
GCACATCAAAGACTCTATCAATTTATTAACTTCAAGTTTATTATTGAGAA
GGTTACAACGTGGTTCGCTTACGATCTCTTGTTTACTACCAGAAAATGTT
GTTTTGCGATTGGAAAACGATTCATGCGACTCGATTGTATTATGCGACGA
AAATTCATCTACACAAGAAATGGGTCGTAATTTATCAATCATCGTCAACG
CTATGAAGAAATCATACCCACACAAGAACATCTATTTCTTAGAGAGTAAG
TATTTTCTTATAAGATATGTTTTGATTCGGGTTTCTTGTTTCGTTTGAGT
AAAAAATTGGCAGATTgacaatttttctaattttaatcATGCGGTTTAAA
GAGCGTTGGCATATAATGTTTTTGTCATTAAAATACGTCATTCGAACACT
TTCACAATTCATTTCCTGTGGTCATTATTTTCTTAATGTCAATCGGAAGC
TCAAATGTCATCCGTTTAAACTGTCCgtattttatttaatttcattATAA
AAGTCGTTAAAGAAATTCCTTTACGACCGGTTAAGTCTAAATAGGGTCAT
AATAAGTGGTTGTCAAAAATGAAAGGCTTATTTTTTATGTTGCGCGCCCT
TtgggttttaaatattttataatTGAATTCTTGAtgctttttgatgaaaa
aaatgaattcccTCACAAGTTGACCATAGAAAAATCTCTTCATAATTCAT
GGTTTACAATTGTTTGAAAAACAATCACGCTTTttatgaatgaatgaaaa
actcgttaaaaattcatttttttcttcactttcattgAGCATGCgctttc
tttcattttgaagaaaaacatttcaTCATTCAGCATGTTAAAGCAAAAAA
TCTCGCgccaaaatcaaatatttttgtacACCCGCGCGCGAAATATTTCA
ACAAACTATTCCCAAAATGAGCATTGCATAACtaatcaaaatttcttttc
ttttcttttatagaaGGCTTCGATCATTTCTGTGAAGAATATCCACAAGC
TTGCTCATTCGATTATCCAGTTTTGGAATCCAACCCACTCTCTATCAATT
TGGTTCCAGACCTTTCAACAGACCCAACGGACAAAAACGTGTTTTCACCA
CACACCGACTTGTGCCCAGTCTCCATCCTTCCCTACTTATACCTCGGTAG
CGCAAACCATGCTTCTCAACAAGAACTCCTCGACAAGCTCGGTATCACAG
CTATCTTAAACGTTTCAAAAACAATCCCTTCAGCTTTCGCACACAGCTAC
AATTACAGAAACATCGCCATCGAAGATAACGCTCGTGAAAATATCTCTTC
ACATTTCGACGACGCCATCAACTTTATCGAAGATGTCAACAACCGTGGTG
GCCGCGTGCTCGTTCACTGTCACGCTGGCATCTCACGCTCAGCAACCATC
TGCATCGCTTACTTGATGAGACAAAAAGGTTTCTCACTTGACGAAGCTTA
CGAATACACCAAAAAACGCAGATCagctatttcaccaaattttAATTTCC
TTGGACAATTACTCGCTTTTGAACGCGAATTGAAAGAACAACACcaacaa
aacaataatatcaccaCCGCTCCATCAAAACGCCCAGCTACAGCTAAATG
TTTCCCACCAAAGCTTACATTAAACTTTAACACAAAACCACCAATGACAT
CGCAAGCTTTCgagaaaaacactgaattttTCACTTATTCACCGATGCCC
AAAAACTGCATCAGCTTTTTCAACGGATCTGAAATGTCATCGCCCTGTCT
CCCTTTGATGACGCCTTCATGAAAAGGGAGCTTGGTACTTTTTATAACAC
TTATGTGTTGagttttttatatcttttgttTGTTAAAAGTTACATTATCT
TGTATTTTAGCTCGCCTTTCTTTTTATGTCATATATCTGAAGCTCTTCCG
TTTTTTGTCGAAAGAGTCGTGAGGCCGAGTTAAACTGAGttgcgtttttt
tcatttttgtgttttttattggagtaaaaagagaaaatttattGATTTGT
ACATATATACGCCCTGAAGTTTATATTTAGATAactatttattacatttt
tttgaaagaatttgtttatattaaaaaaggaaccaacaacaaaaataaca
aaaaaaattgaaagaaaaatttctgaATCCGTATAAATGCACACGTGTAC
TTTTATTCTTCCGGAATTCTCGACTTTT

Coding sequence (CDS) from alignment at sc0000119:59984..62661+

>TCONS_00010948 ID=TCONS_00010948|Name=TCONS_00010948|organism=Clytia hemisphaerica|type=CDS|length=2328bp|location=Sequence derived from alignment at sc0000119:59984..62661+ (Clytia hemisphaerica)
ATGATCTCCAAATGCAATTGCCTCGAGATTACCGCCGAACTCGTTATCGA
GAGTACACATACATCAAGAATCATCTTGGACATTAGAGAACCAATGTTAT
TTGAAAAATCGCACATCAAAGACTCTATCAATTTATTAACTTCAAGTTTA
TTATTGAGAAGGTTACAACGTGGTTCGCTTACGATCTCTTGTTTACTACC
AGAAAATGTTGTTTTGCGATTGGAAAACGATTCATGCGACTCGATTGTAT
TATGCGACGAAAATTCATCTACACAAGAAATGGGTCGTAATTTATCAATC
ATCGTCAACGCTATGAAGAAATCATACCCACACAAGAACATCTATTTCTT
AGAGAaaGGCTTCGATCATTTCTGTGAAGAATATCCACAAGCTTGCTCAT
TCGATTATCCAGTTTTGGAATCCAACCCACTCTCTATCAATTTGGTTCCA
GACCTTTCAACAGACCCAACGGACAAAAACGTGTTTTCACCACACACCGA
CTTGTGCCCAGTCTCCATCCTTCCCTACTTATACCTCGGTAGCGCAAACC
ATGCTTCTCAACAAGAACTCCTCGACAAGCTCGGTATCACAGCTATCTTA
AACGTTTCAAAAACAATCCCTTCAGCTTTCGCACACAGCTACAATTACAG
AAACATCGCCATCGAAGATAACGCTCGTGAAAATATCTCTTCACATTTCG
ACGACGCCATCAACTTTATCGAAGATGTCAACAACCGTGGTGGCCGCGTG
CTCGTTCACTGTCACGCTGGCATCTCACGCTCAGCAACCATCTGCATCGC
TTACTTGATGAGACAAAAAGGTTTCTCACTTGACGAAGCTTACGAATACA
CCAAAAAACGCAGATCagctatttcaccaaattttAATTTCCTTGGACAA
TTACTCGCTTTTGAACGCGAATTGAAAGAACAACACcaacaaaacaataa
tatcaccaCCGCTCCATCAAAACGCCCAGCTACAGCTAAATGTTTCCCAC
CAAAGCTTACATTAAACTTTAACACAAAACCACCAATGACATCGCAAGCT
TTCgagaaaaacactgaattttTCACTTATTCACCGATGCCCAAAAACTG
CATCAGCTTTTTCAACGGATCTGAAATGTCATCGCCCTGTCTCCCTTTGA
TGACGCCTTCATGAATGATCTCCAAATGCAATTGCCTCGAGATTACCGCC
GAACTCGTTATCGAGAGTACACATACATCAAGAATCATCTTGGACATTAG
AGAACCAATGTTATTTGAAAAATCGCACATCAAAGACTCTATCAATTTAT
TAACTTCAAGTTTATTATTGAGAAGGTTACAACGTGGTTCGCTTACGATC
TCTTGTTTACTACCAGAAAATGTTGTTTTGCGATTGGAAAACGATTCATG
CGACTCGATTGTATTATGCGACGAAAATTCATCTACACAAGAAATGGGTC
GTAATTTATCAATCATCGTCAACGCTATGAAGAAATCATACCCACACAAG
AACATCTATTTCTTAGAGAaaGGCTTCGATCATTTCTGTGAAGAATATCC
ACAAGCTTGCTCATTCGATTATCCAGTTTTGGAATCCAACCCACTCTCTA
TCAATTTGGTTCCAGACCTTTCAACAGACCCAACGGACAAAAACGTGTTT
TCACCACACACCGACTTGTGCCCAGTCTCCATCCTTCCCTACTTATACCT
CGGTAGCGCAAACCATGCTTCTCAACAAGAACTCCTCGACAAGCTCGGTA
TCACAGCTATCTTAAACGTTTCAAAAACAATCCCTTCAGCTTTCGCACAC
AGCTACAATTACAGAAACATCGCCATCGAAGATAACGCTCGTGAAAATAT
CTCTTCACATTTCGACGACGCCATCAACTTTATCGAAGATGTCAACAACC
GTGGTGGCCGCGTGCTCGTTCACTGTCACGCTGGCATCTCACGCTCAGCA
ACCATCTGCATCGCTTACTTGATGAGACAAAAAGGTTTCTCACTTGACGA
AGCTTACGAATACACCAAAAAACGCAGATCagctatttcaccaaattttA
ATTTCCTTGGACAATTACTCGCTTTTGAACGCGAATTGAAAGAACAACAC
caacaaaacaataatatcaccaCCGCTCCATCAAAACGCCCAGCTACAGC
TAAATGTTTCCCACCAAAGCTTACATTAAACTTTAACACAAAACCACCAA
TGACATCGCAAGCTTTCgagaaaaacactgaattttTCACTTATTCACCG
ATGCCCAAAAACTGCATCAGCTTTTTCAACGGATCTGAAATGTCATCGCC
CTGTCTCCCTTTGATGACGCCTTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006153XLOC_006153Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010948-proteinTCONS_00010948-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010948-exon-sc0000119-1491911889:59984..60728TCONS_00010948-exon-sc0000119-1491911889:59984..60728Clytia hemisphaericaexon
TCONS_00010948-exon-sc0000119-1510915933:59984..60728TCONS_00010948-exon-sc0000119-1510915933:59984..60728Clytia hemisphaericaexon
TCONS_00010948-exon-sc0000119-1575043694:59984..60728TCONS_00010948-exon-sc0000119-1575043694:59984..60728Clytia hemisphaericaexon
TCONS_00010948-exon-sc0000119-1491911889:61447..62661TCONS_00010948-exon-sc0000119-1491911889:61447..62661Clytia hemisphaericaexon
TCONS_00010948-exon-sc0000119-1510915933:61447..62661TCONS_00010948-exon-sc0000119-1510915933:61447..62661Clytia hemisphaericaexon
TCONS_00010948-exon-sc0000119-1575043694:61447..62661TCONS_00010948-exon-sc0000119-1575043694:61447..62661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:59984..62661 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.61829	6.32258	2.89057	1.79554	89.0478	69.1576	49.207	65.1377	81.6645	353.46	101.303	299.216	220.334	199.991	242.021	310.459	140.238	157.677	219.109	158.895	67.2913	101.649	28.3655	40.3405	98.1531	88.0652	501.501	578.475	423.843	336.719
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008343MKP
IPR020417Atypical_DUSP
IPR001763Rhodanese-like_dom
IPR003595Tyr_Pase_cat
IPR020422TYR_PHOSPHATASE_DUAL_dom
IPR029021Prot-tyrosine_phosphatase-like
IPR000340Dual-sp_phosphatase_cat-dom
IPR016130Tyr_Pase_AS
IPR000387TYR_PHOSPHATASE_dom
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
GO:0016311dephosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0017017MAP kinase tyrosine/serine/threonine phosphatase activity
GO:0008138protein tyrosine/serine/threonine phosphatase activity
GO:0004725protein tyrosine phosphatase activity
GO:0016791phosphatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016311 dephosphorylation
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity
molecular_function GO:0016791 phosphatase activity
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
Blast
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BLAST of TCONS_00010948 vs. Swiss-Prot (Human)
Match: DUS1 (Dual specificity protein phosphatase 1 OS=Homo sapiens GN=DUSP1 PE=1 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 2.974e-62
Identity = 123/294 (41.84%), Postives = 180/294 (61.22%), Query Frame = 1 
Query:  460 IILDIREPMLFEKSHIKDSINXXXXXXXXXXXXXXXXTISCLLPENVVLRLENDSCDSIVLCDENSSTQEMGR---NLSIIVNAMKKSYPHKNIYFLEKGFDHFCEEYPQACSF-DYPVLESNPLSINLVPDLSTDPTDKNVFSPHTDLC-PVSILPYLYLGSANHASQQELLDKLGITAILNVSKTIPSAFAHSYNYRNIAIEDNARENISSHFDDAINFIEDVNNRGGRVLVHCHAGISRSATICIAYLMRQKGFSLDEAYEYTKKRRSAISPNFNFLGQLLAFERELKEQH 1326
            ++LD R    F   HI  S+N+  S+++ RR +        +    +  RL   +  ++VL DE S+  +  +    L++   A+ +      ++FL+ G++ F    P+ CS    P+  S PLS + VPD S +    +  +P  D   PV ILP+LYLGSA HAS++++LD LGITA++NVS   P+ F   Y Y++I +EDN + +ISS F++AI+FI+ + N GGRV VHC AGISRSATIC+AYLMR     LDEA+E+ K+RRS ISPNF+F+GQLL FE ++   H
Sbjct:   25 LLLDCRSFFAFNAGHIAGSVNVRFSTIVRRRAKGAMGLEHIVPNAELRGRLLAGAYHAVVLLDERSAALDGAKRDGTLALAAGALCREARAAQVFFLKGGYEAFSASCPELCSKQSTPMGLSLPLSTS-VPD-SAESGCSSCSTPLYDQGGPVEILPFLYLGSAYHASRKDMLDALGITALINVSANCPNHFEGHYQYKSIPVEDNHKADISSWFNEAIDFIDSIKNAGGRVFVHCQAGISRSATICLAYLMRTNRVKLDEAFEFVKQRRSIISPNFSFMGQLLQFESQVLAPH 316
The following BLAST results are available for this feature:
BLAST of TCONS_00010948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS12.974e-6241.84Dual specificity protein phosphatase 1 OS=Homo sap... [more]
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