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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010946 ID=TCONS_00010946|Name=TCONS_00010946|organism=Clytia hemisphaerica|type=transcript|length=1498bp
gaGAAATGATTGTATGGTTAACTGGTTCAACTTCAGCCGGCAAGACATGG
TTAGGAGATTTTCTGAAACATTATCATAATTTCATTCATCTTGATGGTGA
TGTCAAGATTGTTTTGGAGGGGGAATCAGATGCTGTCAAAGGATTGATTG
ATGCTTTTTACAAGTACTGGTTTGATAGCAAAGAAGCTCCTTTAGAATTA
TGGGTTCCTTATTACCAAGAATTATGTGAGAGAGTTATCAAGCAGTATAA
AGAAACACCTGAGACAGATATTGTTTTATCTTTCTCCACTTATCCGCGCG
TCGTTCGCGATTACGTGCGAGCGGAGATTAAACGTGGTACAGGTCAAGAT
TTAGTAATGGTTTTGTTGGATATGTCAAAAGATGATTACGCGCGGCGACA
AAAAGATAAGCTCTTTGAATGGGCAAAAGCACATAATAAAACTGTACAGG
AAATTTGGGAAGATCACGAGAAATTAAAAGCAATGGGCGAATATGATATG
TCGAAATTAGAGGCTTACTATCGAGAGGCCAAAGAAATGAGGGGTGTGGA
GCCCATACAAGAAGACGAAGAAAATAGTTTTACCATCGATACAAATGGTT
TTCATGTGAAAGTTGTTCCAGAGATAACGAGAATCTTGAAATTGAAAGAA
TGTCCTGATCTggataatgacgtcattatgaAAATGCGTAGCGAGCGATT
GGAAGGGTATGCGCGTTTGAAAGAAGAGATGAAAAAGGGGAAATCCTAAA
CTGATTTGTGTGTTTTGTTGGAGAGTTTTATGATACTTatgatgatttca
atgacttctTATTATTCATAGATaaactattttgttttgttatttaGTTG
TTAGTTaatctttattctttttttggGATAgcttttacgttacaatagac
tctctcttattcgaacttcCAGTATTCGAAtccttctataattcgaatct
ttccatAATACGAACTTATTCCCAGTCCCCGTCAAAGAGAACCCTTGTAA
AAtgctttttataattcgaatatctttataattcgaataaaataagattc
cccgtaCTCGTTCCCCGAGTCAACTGTATACAATTTCGCGGTTTTGCGGA
TTTTATTTTTTcctaaaatgattttttggGTAAAAACTGCTGTCTTCCAT
TTTTCAGTCGATTTCACACTCATTTCGTGatgattattttttgaaaagta
attaCAAATTTCGTGCTTTAGTTATAAGGGATTCAGATTGGCTGTCATTT
ATCTtcttgtgtttttgtttttagaatctAAACAGCCAGATAATTAGGTT
TCATAATTAGGtttctttcaaatcaaaataaaagttttagCAATAAAAAA
CCTAAAATGAGGTTGTTGGGGGGGGGAGTTACTGTAGGTAGATTTGTAAA
ccgatttttattattttcatagatttttaaaaagatatattttttataac
acGCATTCTTATgatatttggaaaaatttatgataaaatCAGACACCA Run BLAST on NCBI protein sequence of TCONS_00010946-protein >TCONS_00010946-protein ID=TCONS_00010946-protein|Name=TCONS_00010946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
EMIVWLTGSTSAGKTWLGDFLKHYHNFIHLDGDVKIVLEGESDAVKGLID
AFYKYWFDSKEAPLELWVPYYQELCERVIKQYKETPETDIVLSFSTYPRV
VRDYVRAEIKRGTGQDLVMVLLDMSKDDYARRQKDKLFEWAKAHNKTVQE
IWEDHEKLKAMGEYDMSKLEAYYREAKEMRGVEPIQEDEENSFTIDTNGF
HVKVVPEITRILKLKECPDLDNDVIMKMRSERLEGYARLKEEMKKGKS Run BLAST on NCBI transcript from alignment at sc0000118:407629..409126 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010946 ID=TCONS_00010946|Name=TCONS_00010946|organism=Clytia hemisphaerica|type=transcript|length=1498bp|location=Sequence derived from alignment at sc0000118:407629..409126 (Clytia hemisphaerica)
TGGTGTCTGattttatcataaatttttccaaatatcATAAGAATGCgtgt
tataaaaaatatatctttttaaaaatctatgaaaataataaaaatcggTT
TACAAATCTACCTACAGTAACTCCCCCCCCCAACAACCTCATTTTAGGTT
TTTTATTGctaaaacttttattttgatttgaaagaaaCCTAATTATGAAA
CCTAATTATCTGGCTGTTTagattctaaaaacaaaaacacaagaAGATAA
ATGACAGCCAATCTGAATCCCTTATAACTAAAGCACGAAATTTGtaatta
cttttcaaaaaataatcatCACGAAATGAGTGTGAAATCGACTGAAAAAT
GGAAGACAGCAGTTTTTACccaaaaaatcattttaggAAAAAATAAAATC
CGCAAAACCGCGAAATTGTATACAGTTGACTCGGGGAACGAGtacgggga
atcttattttattcgaattataaagatattcgaattataaaaagcaTTTT
ACAAGGGTTCTCTTTGACGGGGACTGGGAATAAGTTCGTATTatggaaag
attcgaattatagaaggaTTCGAATACTGgaagttcgaataagagagagt
ctattgtaacgtaaaagcTATCccaaaaaaagaataaagattAACTAACA
ACtaaataacaaaacaaaatagtttATCTATGAATAATAagaagtcattg
aaatcatcatAAGTATCATAAAACTCTCCAACAAAACACACAAATCAGTT
TAGGATTTCCCCTTTTTCATCTCTTCTTTCAAACGCGCATACCCTTCCAA
TCGCTCGCTACGCATTTtcataatgacgtcattatccAGATCAGGACATT
CTTTCAATTTCAAGATTCTCGTTATCTCTGGAACAACTTTCACATGAAAA
CCATTTGTATCGATGGTAAAACTATTTTCTTCGTCTTCTTGTATGGGCTC
CACACCCCTCATTTCTTTGGCCTCTCGATAGTAAGCCTCTAATTTCGACA
TATCATATTCGCCCATTGCTTTTAATTTCTCGTGATCTTCCCAAATTTCC
TGTACAGTTTTATTATGTGCTTTTGCCCATTCAAAGAGCTTATCTTTTTG
TCGCCGCGCGTAATCATCTTTTGACATATCCAACAAAACCATTACTAAAT
CTTGACCTGTACCACGTTTAATCTCCGCTCGCACGTAATCGCGAACGACG
CGCGGATAAGTGGAGAAAGATAAAACAATATCTGTCTCAGGTGTTTCTTT
ATACTGCTTGATAACTCTCTCACATAATTCTTGGTAATAAGGAACCCATA
ATTCTAAAGGAGCTTCTTTGCTATCAAACCAGTACTTGTAAAAAGCATCA
ATCAATCCTTTGACAGCATCTGATTCCCCCTCCAAAACAATCTTGACATC
ACCATCAAGATGAATGAAATTATGATAATGTTTCAGAAAATCTCCTAACC
ATGTCTTGCCGGCTGAAGTTGAACCAGTTAACCATACAATCATTTCtc Coding sequence (CDS) from alignment at sc0000118:407629..409126 >TCONS_00010946 ID=TCONS_00010946|Name=TCONS_00010946|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0000118:407629..409126 (Clytia hemisphaerica)
TTAGGATTTCCCCTTTTTCATCTCTTCTTTCAAACGCGCATACCCTTCCA
ATCGCTCGCTACGCATTTtcataatgacgtcattatccAGATCAGGACAT
TCTTTCAATTTCAAGATTCTCGTTATCTCTGGAACAACTTTCACATGAAA
ACCATTTGTATCGATGGTAAAACTATTTTCTTCGTCTTCTTGTATGGGCT
CCACACCCCTCATTTCTTTGGCCTCTCGATAGTAAGCCTCTAATTTCGAC
ATATCATATTCGCCCATTGCTTTTAATTTCTCGTGATCTTCCCAAATTTC
CTGTACAGTTTTATTATGTGCTTTTGCCCATTCAAAGAGCTTATCTTTTT
GTCGCCGCGCGTAATCATCTTTTGACATATCCAACAAAACCATTACTAAA
TCTTGACCTGTACCACGTTTAATCTCCGCTCGCACGTAATCGCGAACGAC
GCGCGGATAAGTGGAGAAAGATAAAACAATATCTGTCTCAGGTGTTTCTT
TATACTGCTTGATAACTCTCTCACATAATTCTTGGTAATAAGGAACCCAT
AATTCTAAAGGAGCTTCTTTGCTATCAAACCAGTACTTGTAAAAAGCATC
AATCAATCCTTTGACAGCATCTGATTCCCCCTCCAAAACAATCTTGACAT
CACCATCAAGATGAATGAAATTATGATAATGTTTCAGAAAATCTCCTAAC
CATGTCTTGCCGGCTGAAGTTGAACCAGTTAACCATACAATCATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010946-exon-sc0000118-1491911889:407629..409126 | TCONS_00010946-exon-sc0000118-1491911889:407629..409126 | Clytia hemisphaerica | exon |
| TCONS_00010946-exon-sc0000118-1510915933:407629..409126 | TCONS_00010946-exon-sc0000118-1510915933:407629..409126 | Clytia hemisphaerica | exon |
| TCONS_00010946-exon-sc0000118-1575043694:407629..409126 | TCONS_00010946-exon-sc0000118-1575043694:407629..409126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:407629..409126 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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