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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010945 ID=TCONS_00010945|Name=TCONS_00010945|organism=Clytia hemisphaerica|type=transcript|length=1678bp
tttcaatttgaagaaGGGTGCATTATTAAAAGTCAAGGGAATGCTAAAAT
TTTTATGGGATGAATGACCAAAGACTTCGAAGCAAATTGATTCTTTTCTT
TCAATATCGTTTGAACCTGGAGgaggggagggggtactaggttttGCACT
GACGGGTATGTctgagccaaaaatcgaaaatcgaccctttgagagactga
atttcgacgCTTTTGCTACCTTTTGAGAGTCTTTTGCGTCAAAAACTAGA
GGAACTCGCAAAATTTGCTTCTCGCCAAAATACCCTGAAAAAGTAAGGGT
AAAATTTTCAAGCCGTTTAATGAAAGACCTAGTGAGTAGTTGAAATATTC
AAATCAGTATCCATAGTCACTCGTAGTGGCGAAATTAACTGTCCATGAGG
TTAATCTTGAAGGTAGACTGCACTATAATGTGTATTTTCAGTAAACAACG
ACCGCATATTTCTTCATAAGTTCTCTCTGTCGTTTCTTTCGTTCCATCCT
TTGCTTTAGCCTGTGTTTTTTCAACGTATAAACCCAAGGGTTGATGCAAG
AATTCACACAGGCTAAAAAGTCCGCCACGATAAAGAAAATTTGTAAACCC
GGGGGTCGTTTCAAATCCAGGcacaaataaaacaaattaaCGACAAGCAT
AACGGCTATCGGTGAAAAACAAACGATATAACAGATAATAAATCCGGCAA
CTTTCTGTCCAACTTTGAAACGGGCTTGAGATTTACGACATGTGTGATTC
GTCGATAACGTCTTTTTCACTTTATAAATCGCACGTATAATAATGACGTA
GGATACGCAAACAATACCCAACGTAAGAAGATAGACCAACGCTAACATGG
GTACGTAATAACGTAACGCGATTGAATACGTTGTGACGCAGAGTAACGGA
GGAATAACCCACCAGCAAATAATCAATGAGTTTACGCTAACGGTCTCCAA
ATATTGTTCGGCGTCACATTCTTTCATCAAGATACGGCATCGGTAGAACG
CGATGTACGCAATATTTATGGAAGCGACGAAATAAAAAGTACTTATCACC
ATAGCTTGAGCGTGGCATACGAAAAAATAATActcgaaaaattgttcaaa
gcCCATCATCGGGCACACAAAAAAACCAATTATCAAGTCATTTATCACTA
ATGATAACAAAATTTTATCCGATTTTAATTTCGCTTCTTTTTTAGGTGGT
TTGACCAGGTAATATAAAGCTAAGATATTTCCACAAATAGCGGTCACACC
GACGATGATGAATAAGACTCCGAACACATCACGAACAGGTTGCGGTGATC
TTCTAAAGTCTAGTTCACACTTGCGCCATGTATGGTTGAAATACAATAGG
TAGCGTTTCATCATATTGATATCAAGAAATCCTTCAAATAATTATCTCCT
GTTTTTATTGCTTTCGGATTGTCTCGAGGCCACAATTTATTCTAACATCA
GCTTCTAAATCACATTCAGAAAGGTTCAAATCTTAGTCTTGAAGCCaact
tatttttctcttctatTTCCTTTTCTTTCAATAGGAATTTCTGTTTCGAC
GATAATTTGTATGGTTGaccttttctatttttttcgtTGACAGTTTTTCA
GCACTCTGTCGATTACAGGGTGTCAAGATCTTTTGGGAGGTGATTCGTAA
GATTTTAACAGTGCATTTTGAATACTGA Run BLAST on NCBI protein sequence of TCONS_00010945-protein >TCONS_00010945-protein ID=TCONS_00010945-protein|Name=TCONS_00010945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MMKRYLLYFNHTWRKCELDFRRSPQPVRDVFGVLFIIVGVTAICGNILAL
YYLVKPPKKEAKLKSDKILLSLVINDLIIGFFVCPMMGFEQFFEYYFFVC
HAQAMVISTFYFVASINIAYIAFYRCRILMKECDAEQYLETVSVNSLIIC
WWVIPPLLCVTTYSIALRYYVPMLALVYLLTLGIVCVSYVIIIRAIYKVK
KTLSTNHTCRKSQARFKVGQKVAGFIICYIVCFSPIAVMLVVNLFYLCLD
LKRPPGLQIFFIVADFLACVNSCINPWVYTLKKHRLKQRMERKKRQRELM
KKYAVVVY Run BLAST on NCBI transcript from alignment at sc0000118:397560..399237 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010945 ID=TCONS_00010945|Name=TCONS_00010945|organism=Clytia hemisphaerica|type=transcript|length=1678bp|location=Sequence derived from alignment at sc0000118:397560..399237 (Clytia hemisphaerica)
TCAGTATTCAAAATGCACTGTTAAAATCTTACGAATCACCTCCCAAAAGA
TCTTGACACCCTGTAATCGACAGAGTGCTGAAAAACTGTCAacgaaaaaa
atagaaaaggtCAACCATACAAATTATCGTCGAAACAGAAATTCCTATTG
AAAGAAAAGGAAatagaagagaaaaataagttGGCTTCAAGACTAAGATT
TGAACCTTTCTGAATGTGATTTAGAAGCTGATGTTAGAATAAATTGTGGC
CTCGAGACAATCCGAAAGCAATAAAAACAGGAGATAATTATTTGAAGGAT
TTCTTGATATCAATATGATGAAACGCTACCTATTGTATTTCAACCATACA
TGGCGCAAGTGTGAACTAGACTTTAGAAGATCACCGCAACCTGTTCGTGA
TGTGTTCGGAGTCTTATTCATCATCGTCGGTGTGACCGCTATTTGTGGAA
ATATCTTAGCTTTATATTACCTGGTCAAACCACCTAAAAAAGAAGCGAAA
TTAAAATCGGATAAAATTTTGTTATCATTAGTGATAAATGACTTGATAAT
TGGTTTTTTTGTGTGCCCGATGATGGgctttgaacaatttttcgagTATT
ATTTTTTCGTATGCCACGCTCAAGCTATGGTGATAAGTACTTTTTATTTC
GTCGCTTCCATAAATATTGCGTACATCGCGTTCTACCGATGCCGTATCTT
GATGAAAGAATGTGACGCCGAACAATATTTGGAGACCGTTAGCGTAAACT
CATTGATTATTTGCTGGTGGGTTATTCCTCCGTTACTCTGCGTCACAACG
TATTCAATCGCGTTACGTTATTACGTACCCATGTTAGCGTTGGTCTATCT
TCTTACGTTGGGTATTGTTTGCGTATCCTACGTCATTATTATACGTGCGA
TTTATAAAGTGAAAAAGACGTTATCGACGAATCACACATGTCGTAAATCT
CAAGCCCGTTTCAAAGTTGGACAGAAAGTTGCCGGATTTATTATCTGTTA
TATCGTTTGTTTTTCACCGATAGCCGTTATGCTTGTCGttaatttgtttt
atttgtgCCTGGATTTGAAACGACCCCCGGGTTTACAAATTTTCTTTATC
GTGGCGGACTTTTTAGCCTGTGTGAATTCTTGCATCAACCCTTGGGTTTA
TACGTTGAAAAAACACAGGCTAAAGCAAAGGATGGAACGAAAGAAACGAC
AGAGAGAACTTATGAAGAAATATGCGGTCGTTGTTTACTGAAAATACACA
TTATAGTGCAGTCTACCTTCAAGATTAACCTCATGGACAGTTAATTTCGC
CACTACGAGTGACTATGGATACTGATTTGAATATTTCAACTACTCACTAG
GTCTTTCATTAAACGGCTTGAAAATTTTACCCTTACTTTTTCAGGGTATT
TTGGCGAGAAGCAAATTTTGCGAGTTCCTCTAGTTTTTGACGCAAAAGAC
TCTCAAAAGGTAGCAAAAGcgtcgaaattcagtctctcaaagggtcgatt
ttcgatttttggctcagACATACCCGTCAGTGCaaaacctagtaccccct
cccctcCTCCAGGTTCAAACGATATTGAAAGAAAAGAATCAATTTGCTTC
GAAGTCTTTGGTCATTCATCCCATAAAAATTTTAGCATTCCCTTGACTTT
TAATAATGCACCCttcttcaaattgaaa Coding sequence (CDS) from alignment at sc0000118:397560..399237 >TCONS_00010945 ID=TCONS_00010945|Name=TCONS_00010945|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0000118:397560..399237 (Clytia hemisphaerica)
ATGATGAAACGCTACCTATTGTATTTCAACCATACATGGCGCAAGTGTGA
ACTAGACTTTAGAAGATCACCGCAACCTGTTCGTGATGTGTTCGGAGTCT
TATTCATCATCGTCGGTGTGACCGCTATTTGTGGAAATATCTTAGCTTTA
TATTACCTGGTCAAACCACCTAAAAAAGAAGCGAAATTAAAATCGGATAA
AATTTTGTTATCATTAGTGATAAATGACTTGATAATTGGTTTTTTTGTGT
GCCCGATGATGGgctttgaacaatttttcgagTATTATTTTTTCGTATGC
CACGCTCAAGCTATGGTGATAAGTACTTTTTATTTCGTCGCTTCCATAAA
TATTGCGTACATCGCGTTCTACCGATGCCGTATCTTGATGAAAGAATGTG
ACGCCGAACAATATTTGGAGACCGTTAGCGTAAACTCATTGATTATTTGC
TGGTGGGTTATTCCTCCGTTACTCTGCGTCACAACGTATTCAATCGCGTT
ACGTTATTACGTACCCATGTTAGCGTTGGTCTATCTTCTTACGTTGGGTA
TTGTTTGCGTATCCTACGTCATTATTATACGTGCGATTTATAAAGTGAAA
AAGACGTTATCGACGAATCACACATGTCGTAAATCTCAAGCCCGTTTCAA
AGTTGGACAGAAAGTTGCCGGATTTATTATCTGTTATATCGTTTGTTTTT
CACCGATAGCCGTTATGCTTGTCGttaatttgttttatttgtgCCTGGAT
TTGAAACGACCCCCGGGTTTACAAATTTTCTTTATCGTGGCGGACTTTTT
AGCCTGTGTGAATTCTTGCATCAACCCTTGGGTTTATACGTTGAAAAAAC
ACAGGCTAAAGCAAAGGATGGAACGAAAGAAACGACAGAGAGAACTTATG
AAGAAATATGCGGTCGTTGTTTACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010945-exon-sc0000118-1491911889:397560..399237 | TCONS_00010945-exon-sc0000118-1491911889:397560..399237 | Clytia hemisphaerica | exon |
| TCONS_00010945-exon-sc0000118-1510915933:397560..399237 | TCONS_00010945-exon-sc0000118-1510915933:397560..399237 | Clytia hemisphaerica | exon |
| TCONS_00010945-exon-sc0000118-1575043694:397560..399237 | TCONS_00010945-exon-sc0000118-1575043694:397560..399237 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:397560..399237 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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