TCONS_00010942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010942
Unique NameTCONS_00010942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010942 ID=TCONS_00010942|Name=TCONS_00010942|organism=Clytia hemisphaerica|type=transcript|length=740bp
GAGCAGTATTCCAGATGTTGAAGTACCAATGTCTTCCAAAGAGTGATCAT
TACTGATTTATCTCTGGACTTGAAGGTTCTGTATATCCAGGCACTTATAC
CCTCGACTCTGTCAGTTATCGTTTGAATGTGCATTTCATATGACAGGTTG
TTTGAGAGCAGGATACCCAGGTCTTTCACTGCACTTTTTATTTCGACTGG
CTGCTGTACATCTGATTTGTAGACTGAGTGTACTTTCAgttgttcatttt
ttccgtatgcaatgtgttcaaacttttttccattgagCTCCATATTgttg
atggatgtccagtcataGACAACGTCTAGATCATCTTGAAGCAGACTCAC
ATCTGCAGCGCAAGATATTGACTTCATAAGTCTTGTGTCGTCAGCAAAAG
ATGAGAGGATGGAATGTTTAATCTTTTCGTTTATGTCACTGATCATTACC
AGAAACAAGAGGGGGCCCAGAACTGAGCCTTGTGGAACTCCGCTTGTAAC
TTTCGCTTCATCTGATTTTTCGTGTTTATGGAAACTTTTTGGTATCTCTC
AGTAAGGATAAGGATTGTATCCAGTTCAATAGTTGTCCTTTGATTCCATT
GATTTTTAGCTTGTGTAGCAAGATGTGATGGTCCACCTTGTCAAAGGCGT
TGCTGAAGTCAAGGTAGATtacatcaacattttcattgttttgtagGTGA
GATATCAGTCTTTCTACATGAGCCAATAGTTGACTCAAGC
Run BLAST on NCBI

protein sequence of TCONS_00010942-protein

>TCONS_00010942-protein ID=TCONS_00010942-protein|Name=TCONS_00010942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MISDINEKIKHSILSSFADDTRLMKSISCAADVSLLQDDLDVVYDWTSIN
NMELNGKKFEHIAYGKNEQLKVHSVYKSDVQQPVEIKSAVKDLGILLSNN
LSYEMHIQTITDRVEGISAWIYRTFKSRDKSVMITLWKTLVLQHLEYC
Run BLAST on NCBI

transcript from alignment at sc0000118:335586..336325

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010942 ID=TCONS_00010942|Name=TCONS_00010942|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at sc0000118:335586..336325 (Clytia hemisphaerica)
GCTTGAGTCAACTATTGGCTCATGTAGAAAGACTGATATCTCACctacaa
aacaatgaaaatgttgatgtaATCTACCTTGACTTCAGCAACGCCTTTGA
CAAGGTGGACCATCACATCTTGCTACACAAGCTAAAAATCAATGGAATCA
AAGGACAACTATTGAACTGGATACAATCCTTATCCTTACTGAGAGATACC
AAAAAGTTTCCATAAACACGAAAAATCAGATGAAGCGAAAGTTACAAGCG
GAGTTCCACAAGGCTCAGTTCTGGGCCCCCTCTTGTTTCTGGTAATGATC
AGTGACATAAACGAAAAGATTAAACATTCCATCCTCTCATCTTTTGCTGA
CGACACAAGACTTATGAAGTCAATATCTTGCGCTGCAGATGTGAGTCTGC
TTCAAGATGATCTAGACGTTGTCtatgactggacatccatcaacAATATG
GAGctcaatggaaaaaagtttgaacacattgcatacggaaaaaatgaaca
acTGAAAGTACACTCAGTCTACAAATCAGATGTACAGCAGCCAGTCGAAA
TAAAAAGTGCAGTGAAAGACCTGGGTATCCTGCTCTCAAACAACCTGTCA
TATGAAATGCACATTCAAACGATAACTGACAGAGTCGAGGGTATAAGTGC
CTGGATATACAGAACCTTCAAGTCCAGAGATAAATCAGTAATGATCACTC
TTTGGAAGACATTGGTACTTCAACATCTGGAATACTGCTC

Coding sequence (CDS) from alignment at sc0000118:335586..336325

>TCONS_00010942 ID=TCONS_00010942|Name=TCONS_00010942|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000118:335586..336325 (Clytia hemisphaerica)
ATGATCAGTGACATAAACGAAAAGATTAAACATTCCATCCTCTCATCTTT
TGCTGACGACACAAGACTTATGAAGTCAATATCTTGCGCTGCAGATGTGA
GTCTGCTTCAAGATGATCTAGACGTTGTCtatgactggacatccatcaac
AATATGGAGctcaatggaaaaaagtttgaacacattgcatacggaaaaaa
tgaacaacTGAAAGTACACTCAGTCTACAAATCAGATGTACAGCAGCCAG
TCGAAATAAAAAGTGCAGTGAAAGACCTGGGTATCCTGCTCTCAAACAAC
CTGTCATATGAAATGCACATTCAAACGATAACTGACAGAGTCGAGGGTAT
AAGTGCCTGGATATACAGAACCTTCAAGTCCAGAGATAAATCAGTAATGA
TCACTCTTTGGAAGACATTGGTACTTCAACATCTGGAATACTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006147XLOC_006147Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010942-proteinTCONS_00010942-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010942-exon-sc0000118-1491911889:335586..336325TCONS_00010942-exon-sc0000118-1491911889:335586..336325Clytia hemisphaericaexon
TCONS_00010942-exon-sc0000118-1510915933:335586..336325TCONS_00010942-exon-sc0000118-1510915933:335586..336325Clytia hemisphaericaexon
TCONS_00010942-exon-sc0000118-1575043694:335586..336325TCONS_00010942-exon-sc0000118-1575043694:335586..336325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:335586..336325 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.60049	1.88842	2.48783	3.30875	3.58529	2.13224	2.5266	3.46147	2.52627	2.13499	0.667336	2.26612	1.29303	2.05741	1.16313	1.53928	0.447514	0.786156	0.204109	1.78632	1.83875	2.50428	1.30362	0	2.39659	2.20327	4.2709	2.37776	2.98026	3.28733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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