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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010941 ID=TCONS_00010941|Name=TCONS_00010941|organism=Clytia hemisphaerica|type=transcript|length=822bp
ggaaaatcgggaaatcatcAATGGACGCTCTACGTCGAAATCGTCTTCGA
ATGGTGACTTTGATAGACCTTCATCACACTGTTAAACATCTCGCTAATAC
CAATTACCAAAACAAAGGTCTTTTAACAGAGGTTCCTACCAATCGAACGT
GTAGTACTGTCGAGTTATCGACTCCCAGTTATTGTATTTGTAAAGGTTGG
CGTAAAACTGAGcaaaataaaaccttattttGGCCTTTCGTTGAATTCGC
AGTTGGACAGTTGAATAATATTATTTCAGATGCGTCACCCAAGGGGCGCT
GTAAACGGTTAGTCCCGTCCGGTTTCGAGAGCTTAAGTACTATTTTAGCT
GGTTCGAATATAGACTTATCTTTCGATGTGTTAGCAAAACCTGGGCCTGG
ATCTAGTAATGCGGAAGATAAATTCTCCTTCCAAATCTTGTaccaaagaa
aaatgaaactgaAAACATTCAACACTAAACTCGTTTCTTACTCACGTATA
TCTCCTTACGGCGGATATAAAAAATGTAGTGATACTAAACCAAATGATCT
TAGGTTGTGTATATGTGATTTGAATTTACCGTCCAATAAAAGTGCACCTA
AATTATTAACACCTTACAATCTGTTACCAGCAAGGATAGACTATGTTCCC
ACAATCAAGCGTAAAGACTTCTTTTCAAATGAAAGCATTTCAATTATACA
AAAAGAATACTTGAGTCTCATAAAGAGGGATATTTACGAGAAACCGAACC
AGAAATCAAGGACTTCAACAACTTTCGAAGTTGTCAATTATTCGTCTCAC
AGAACCTATGAAGTTAGCATCA Run BLAST on NCBI protein sequence of TCONS_00010941-protein >TCONS_00010941-protein ID=TCONS_00010941-protein|Name=TCONS_00010941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
KIGKSSMDALRRNRLRMVTLIDLHHTVKHLANTNYQNKGLLTEVPTNRTC
STVELSTPSYCICKGWRKTEQNKTLFWPFVEFAVGQLNNIISDASPKGRC
KRLVPSGFESLSTILAGSNIDLSFDVLAKPGPGSSNAEDKFSFQILYQRK
MKLKTFNTKLVSYSRISPYGGYKKCSDTKPNDLRLCICDLNLPSNKSAPK
LLTPYNLLPARIDYVPTIKRKDFFSNESISIIQKEYLSLIKRDIYEKPNQ
KSRTSTTFEVVNYSSHRTYEVSI Run BLAST on NCBI transcript from alignment at sc0000118:307757..308578 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010941 ID=TCONS_00010941|Name=TCONS_00010941|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at sc0000118:307757..308578 (Clytia hemisphaerica)
TGATGCTAACTTCATAGGTTCTGTGAGACGAATAATTGACAACTTCGAAA
GTTGTTGAAGTCCTTGATTTCTGGTTCGGTTTCTCGTAAATATCCCTCTT
TATGAGACTCAAGTATTCTTTTTGTATAATTGAAATGCTTTCATTTGAAA
AGAAGTCTTTACGCTTGATTGTGGGAACATAGTCTATCCTTGCTGGTAAC
AGATTGTAAGGTGTTAATAATTTAGGTGCACTTTTATTGGACGGTAAATT
CAAATCACATATACACAACCTAAGATCATTTGGTTTAGTATCACTACATT
TTTTATATCCGCCGTAAGGAGATATACGTGAGTAAGAAACGAGTTTAGTG
TTGAATGTTTtcagtttcatttttctttggtACAAGATTTGGAAGGAGAA
TTTATCTTCCGCATTACTAGATCCAGGCCCAGGTTTTGCTAACACATCGA
AAGATAAGTCTATATTCGAACCAGCTAAAATAGTACTTAAGCTCTCGAAA
CCGGACGGGACTAACCGTTTACAGCGCCCCTTGGGTGACGCATCTGAAAT
AATATTATTCAACTGTCCAACTGCGAATTCAACGAAAGGCCaaaataagg
ttttattttgCTCAGTTTTACGCCAACCTTTACAAATACAATAACTGGGA
GTCGATAACTCGACAGTACTACACGTTCGATTGGTAGGAACCTCTGTTAA
AAGACCTTTGTTTTGGTAATTGGTATTAGCGAGATGTTTAACAGTGTGAT
GAAGGTCTATCAAAGTCACCATTCGAAGACGATTTCGACGTAGAGCGTCC
ATTgatgatttcccgattttcc Coding sequence (CDS) from alignment at sc0000118:307757..308578 >TCONS_00010941 ID=TCONS_00010941|Name=TCONS_00010941|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at sc0000118:307757..308578 (Clytia hemisphaerica)
GATGCTAACTTCATAGGTTCTGTGAGACGAATAATTGACAACTTCGAAAG
TTGTTGAAGTCCTTGATTTCTGGTTCGGTTTCTCGTAAATATCCCTCTTT
ATGAGACTCAAGTATTCTTTTTGTATAATTGAAATGCTTTCATTTGAAAA
GAAGTCTTTACGCTTGATTGTGGGAACATAGTCTATCCTTGCTGGTAACA
GATTGTAAGGTGTTAATAATTTAGGTGCACTTTTATTGGACGGTAAATTC
AAATCACATATACACAACCTAAGATCATTTGGTTTAGTATCACTACATTT
TTTATATCCGCCGTAAGGAGATATACGTGAGTAAGAAACGAGTTTAGTGT
TGAATGTTTtcagtttcatttttctttggtACAAGATTTGGAAGGAGAAT
TTATCTTCCGCATTACTAGATCCAGGCCCAGGTTTTGCTAACACATCGAA
AGATAAGTCTATATTCGAACCAGCTAAAATAGTACTTAAGCTCTCGAAAC
CGGACGGGACTAACCGTTTACAGCGCCCCTTGGGTGACGCATCTGAAATA
ATATTATTCAACTGTCCAACTGCGAATTCAACGAAAGGCCaaaataaggt
tttattttgCTCAGTTTTACGCCAACCTTTACAAATACAATAACTGGGAG
TCGATAACTCGACAGTACTACACGTTCGATTGGTAGGAACCTCTGTTAAA
AGACCTTTGTTTTGGTAATTGGTATTAGCGAGATGTTTAACAGTGTGATG
AAGGTCTATCAAAGTCACCATTCGAAGACGATTTCGACGTAGAGCGTCCA
TTgatgatttcccgatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010941-exon-sc0000118-1491911889:307757..308578 | TCONS_00010941-exon-sc0000118-1491911889:307757..308578 | Clytia hemisphaerica | exon |
| TCONS_00010941-exon-sc0000118-1510915933:307757..308578 | TCONS_00010941-exon-sc0000118-1510915933:307757..308578 | Clytia hemisphaerica | exon |
| TCONS_00010941-exon-sc0000118-1575043694:307757..308578 | TCONS_00010941-exon-sc0000118-1575043694:307757..308578 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:307757..308578 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004245 | DUF229 |
Blast
The following BLAST results are available for this feature:
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