TCONS_00010939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010939
Unique NameTCONS_00010939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010939 ID=TCONS_00010939|Name=TCONS_00010939|organism=Clytia hemisphaerica|type=transcript|length=284bp
GAATATGGGTACACCAAGCGACTTCAAACCTTCTAGAAATGTTTCTAGCG
ACTTGAAGACGACCCGTAAAGATTTTCAAGCCGTTTGAGCAGCTAGAGAA
GGTGGAATTGCTGTTTTACTAACGGGCGGGAAACAGGGCGTCCATGGGCG
aagcattaaaagcttaaaGGTAGGTAttttaaaacctaaaattttatgct
tattctttacttttatgaattgaaattttcagaggttGTTCCAGAGAAGT
TATACTTGactttaagccaaaaaaataaaaaacc
Run BLAST on NCBI

transcript from alignment at sc0000118:241259..241542

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010939 ID=TCONS_00010939|Name=TCONS_00010939|organism=Clytia hemisphaerica|type=transcript|length=284bp|location=Sequence derived from alignment at sc0000118:241259..241542 (Clytia hemisphaerica)
ggttttttatttttttggcttaaagtCAAGTATAACTTCTCTGGAACaac
ctctgaaaatttcaattcataaaagtaaagaataagcataaaattttagg
ttttaaaaTACCTACCtttaagcttttaatgcttCGCCCATGGACGCCCT
GTTTCCCGCCCGTTAGTAAAACAGCAATTCCACCTTCTCTAGCTGCTCAA
ACGGCTTGAAAATCTTTACGGGTCGTCTTCAAGTCGCTAGAAACATTTCT
AGAAGGTTTGAAGTCGCTTGGTGTACCCATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006144XLOC_006144Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010939-exon-sc0000118-1491911889:241259..241542TCONS_00010939-exon-sc0000118-1491911889:241259..241542Clytia hemisphaericaexon
TCONS_00010939-exon-sc0000118-1510915933:241259..241542TCONS_00010939-exon-sc0000118-1510915933:241259..241542Clytia hemisphaericaexon
TCONS_00010939-exon-sc0000118-1575043694:241259..241542TCONS_00010939-exon-sc0000118-1575043694:241259..241542Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:241259..241542 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40875	1.83167	0.61653	0.60498	1.75309	0	0	1.05947	2.59096	1.41675	1.91905	4.09322	4.16235	5.62349	0.582899	1.78829	0.371429	0	1.61537	7.69393	0.908039	0.664364	0.538415	0	1.59275	1.04991	2.42053	1.37436	1.65664	0.646036
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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