TCONS_00010935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010935
Unique NameTCONS_00010935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010935 ID=TCONS_00010935|Name=TCONS_00010935|organism=Clytia hemisphaerica|type=transcript|length=366bp
GGCATGTTGGAAGTTATAATTGACAGAAGAATTCTCTCATTACGACGTAT
TTACATAACAAAATGAGGTAaattaaaatacttttttgtaatttttccaa
TTCGTTAGAAAACGGCCTCGCGGAGGTTGTGAAGATTTGTTCACTTTATA
GGTTTTCTATGTTTcattaagttacgtaatttccgccattatgaaagcAA
GTTATCGCCTCTGCATATTCGAACGCTTCCGTAATGgtgtaaattacgta
acttagtaAAACATGGAAAACCCACTAAGGTCAGTATTACTTTGACCAAG
CTATATCGgcaatctttgatcgaagtttttttaaaagtggtaccctaatg
gtagcgcTACTCGATG
Run BLAST on NCBI

transcript from alignment at sc0000118:75129..75494

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010935 ID=TCONS_00010935|Name=TCONS_00010935|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at sc0000118:75129..75494 (Clytia hemisphaerica)
CATCGAGTAgcgctaccattagggtaccacttttaaaaaaacttcgatca
aagattgcCGATATAGCTTGGTCAAAGTAATACTGACCTTAGTGGGTTTT
CCATGTTTtactaagttacgtaatttacacCATTACGGAAGCGTTCGAAT
ATGCAGAGGCGATAACTTgctttcataatggcggaaattacgtaacttaa
tgAAACATAGAAAACCTATAAAGTGAACAAATCTTCACAACCTCCGCGAG
GCCGTTTTCTAACGAAttggaaaaattacaaaaaagtattttaattTACC
TCATTTTGTTATGTAAATACGTCGTAATGAGAGAATTCTTCTGTCAATTA
TAACTTCCAACATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006140XLOC_006140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010935-exon-sc0000118-1491911889:75129..75494TCONS_00010935-exon-sc0000118-1491911889:75129..75494Clytia hemisphaericaexon
TCONS_00010935-exon-sc0000118-1510915933:75129..75494TCONS_00010935-exon-sc0000118-1510915933:75129..75494Clytia hemisphaericaexon
TCONS_00010935-exon-sc0000118-1575043694:75129..75494TCONS_00010935-exon-sc0000118-1575043694:75129..75494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:75129..75494 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225973	0	0.511716	1.00127	1.52369	0.722422	7.55362	9.79145	1.71381	0.943478	6.41034	3.61192	2.85546	3.27758	1.02652	5.09496	1.01782	2.08647	0	0.7541	1.09242	0.959117	0.777288	0.942224	3.63926	4.98019	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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