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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010930 ID=TCONS_00010930|Name=TCONS_00010930|organism=Clytia hemisphaerica|type=transcript|length=3311bpRun BLAST on NCBI protein sequence of TCONS_00010930-protein >TCONS_00010930-protein ID=TCONS_00010930-protein|Name=TCONS_00010930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=958bp IVPGIVEVLDFEPIFFHSQEPFRNKDKQKKIVMDEVENAEVLLQGSNNVERun BLAST on NCBI transcript from alignment at sc0000118:518801..527129- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010930 ID=TCONS_00010930|Name=TCONS_00010930|organism=Clytia hemisphaerica|type=transcript|length=8329bp|location=Sequence derived from alignment at sc0000118:518801..527129- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000118:518801..527129- >TCONS_00010930 ID=TCONS_00010930|Name=TCONS_00010930|organism=Clytia hemisphaerica|type=CDS|length=28770bp|location=Sequence derived from alignment at sc0000118:518801..527129- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010930 vs. Swiss-Prot (Human)
Match: NAF1 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Homo sapiens GN=NAF1 PE=1 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 1.484e-29 Identity = 58/133 (43.61%), Postives = 93/133 (69.92%), Query Frame = 3
Query: 747 LVSIGVVSGVVEKMIVLEAKKDAPALDADTALFLSKDKYLGKVFDTFGPVKTPFYSIRAPSK--LDCTQIAKGTKVFFVPFNQNLTRYIFVEELKKLKGSDASWKNDCEPPPELLDYSDDEQEREAKKKGKNR 1139
L +G+VS ++E+++++E+ + P ++ +T +F S + GK+F+ FGPV PFY +R S ++ I ++F P ++ T+YIF E+LK+ KGSDASWKND EPPPE LD+SDDE+E+EAK++ K++
Sbjct: 198 LKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFAPSMKDFTQYIFTEKLKQDKGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQ 330 The following BLAST results are available for this feature:
BLAST of TCONS_00010930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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