TCONS_00010928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010928
Unique NameTCONS_00010928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010928 ID=TCONS_00010928|Name=TCONS_00010928|organism=Clytia hemisphaerica|type=transcript|length=847bp
tagtgccttaaaaataataataaaaactaCAAAGAAAAATTCATAGAATG
GTCAAATTAAAGATAGGAATCATCGGAGGAACTGGATTGGACAATCCAGA
AATTTTCACCAACAAAAATGAAGTAAGTGTAACCACACCTTACGGTGCTC
CATCATCAAGCCTGATCACTGGCCAACTTCACGGTGTTGACGTGGTCTTA
CTTGCGCGACATGGACGTCAACACGAGACAAATCCTTCCTCCATCAACTA
TCGCGCGAACATCCATGCGCTTAAAGAGATCGGTTGTACACACGTGCTGG
CAACCAACGCGTGCGGTTCGTTGCGCGATGAATATCGTGTTGGAGACCTC
ATTATTTTGGATCAGTTCATTGATAAAACCTTCAAGCGTGAATGTACATT
TTATTCAGGGTACGAGGGCGGACCGAAGGGCGTTATGCATATCCCAATGG
GACACCCTTTCTGTGAAGACACACGAAAATGTATGATTGAGGCANAATTA
AAGATAGGAATCATCGGAGGAACTGGATTGGACAATCCAGAAATTTTCAC
CAACAAAAATGAAGTAAGTGTAACCACACCTTACGGTGCTCCATCATCAA
GCCTGATCACTGGCCAACTTCACGGTGTTGACGTGGTCTTACTTGCGCGA
CATGGACGTCAACACGAGACAAATCCTTCCTCCATCAACTATCGCGCGAA
CATCCATGCGCTTAAAGAGATCGGTTGTACACACGTGCTGGCAACCAACG
CGTGCGGTTCGTTGCGCGAGGAATATCGTGTTGGAGACCTCATTATTTTG
GATCAGTTCATTGATAAAACCTTCAAGCGTGAATGTACATTTTATTC
Run BLAST on NCBI

transcript from alignment at sc0000118:514964..515810-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010928 ID=TCONS_00010928|Name=TCONS_00010928|organism=Clytia hemisphaerica|type=transcript|length=847bp|location=Sequence derived from alignment at sc0000118:514964..515810- (Clytia hemisphaerica)
TAGTGCCTTAAAAATAATAATAAAAACTACAAAGAAAAATTCATAGAATG
GTCAAATTAAAGATAGGAATCATCGGAGGAACTGGATTGGACAATCCAGA
AATTTTCACCAACAAAAATGAAGTAAGTGTAACCACACCTTACGGTGCTC
CATCATCAAGCCTGATCACTGGCCAACTTCACGGTGTTGACGTGGTCTTA
CTTGCGCGACATGGACGTCAACACGAGACAAATCCTTCCTCCATCAACTA
TCGCGCGAACATCCATGCGCTTAAAGAGATCGGTTGTACACACGTGCTGG
CAACCAACGCGTGCGGTTCGTTGCGCGATGAATATCGTGTTGGAGACCTC
ATTATTTTGGATCAGTTCATTGATAAAACCTTCAAGCGTGAATGTACATT
TTATTCAGGGTACGAGGGCGGACCGAAGGGCGTTATGCATATCCCAATGG
GACACCCTTTCTGTGAAGACACACGAAAATGTATGATTGAGGCANAATTA
AAGATAGGAATCATCGGAGGAACTGGATTGGACAATCCAGAAATTTTCAC
CAACAAAAATGAAGTAAGTGTAACCACACCTTACGGTGCTCCATCATCAA
GCCTGATCACTGGCCAACTTCACGGTGTTGACGTGGTCTTACTTGCGCGA
CATGGACGTCAACACGAGACAAATCCTTCCTCCATCAACTATCGCGCGAA
CATCCATGCGCTTAAAGAGATCGGTTGTACACACGTGCTGGCAACCAACG
CGTGCGGTTCGTTGCGCGAGGAATATCGTGTTGGAGACCTCATTATTTTG
GATCAGTTCATTGATAAAACCTTCAAGCGTGAATGTACATTTTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006135XLOC_006135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010928-exon-sc0000118-1575043694:514964..515810TCONS_00010928-exon-sc0000118-1575043694:514964..515810Clytia hemisphaericaexon
TCONS_00010928-exon-sc0000118-1510915933:514964..515810TCONS_00010928-exon-sc0000118-1510915933:514964..515810Clytia hemisphaericaexon
TCONS_00010928-exon-sc0000118-1491911889:514964..515810TCONS_00010928-exon-sc0000118-1491911889:514964..515810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:514964..515810 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.97938	8.56282	8.25158	6.80792	3.32291	4.52772	5.0839	5.70369	11.5497	12.8532	9.47254	6.90029	12.5413	11.1258	18.7067	20.2825	17.5249	13.5306	8.45321	9.27406	4.33575	5.75126	5.99773	4.75729	5.46202	3.81246	1.80351	2.15129	3.5699	4.10165
Blast
[Close]
BLAST of TCONS_00010928 vs. Swiss-Prot (Human)
Match: MTAP (S-methyl-5'-thioadenosine phosphorylase OS=Homo sapiens GN=MTAP PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.151e-51
Identity = 80/141 (56.74%), Postives = 99/141 (70.21%), Query Frame = 3 
Query:   81 TGLDNPEIFTNKNEVSVTTPYGAPSSSLITGQLHGVDVVLLARHGRQHETNPSSINYRANIHALKEIGCTHVLATNACGSLRDEYRVGDLIILDQFIDKTFKRECTFYSGYEGGPKGVMHIPMGHPFCEDTRKCMIEAXLK 503
            TGLD+PEI   + E  V TP+G PS +LI G++  VD VLLARHGRQH   PS +NY+ANI ALKE GCTHV+ T ACGSLR+E + GD++I+DQFID+T  R  +FY G     +GV HIPM  PFC  TR+ +IE   K
Sbjct:   18 TGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKK 158

HSP 2 Score: 144.05 bits (362), Expect = 2.205e-40
Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = 3 
Query:  522 TGLDNPEIFTNKNEVSVTTPYGAPSSSLITGQLHGVDVVLLARHGRQHETNPSSINYRANIHALKEIGCTHVLATNACGSLREEYRVGDLIILDQFIDKTFKRECTFY 845
            TGLD+PEI   + E  V TP+G PS +LI G++  VD VLLARHGRQH   PS +NY+ANI ALKE GCTHV+ T ACGSLREE + GD++I+DQFID+T  R  +FY
Sbjct:   18 TGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFY 125
The following BLAST results are available for this feature:
BLAST of TCONS_00010928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTAP1.151e-5156.74S-methyl-5'-thioadenosine phosphorylase OS=Homo sa... [more]
back to top