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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010927 ID=TCONS_00010927|Name=TCONS_00010927|organism=Clytia hemisphaerica|type=transcript|length=1891bp
GAAAttcaaggtcttaagtaaaattttacgtacatgtgaaaaaagcttca
gagaaaaatttttgaaattcttttgagaccctttgagagattatttttaa
attttaggtgATTTCTCTACTGATTTCAGTCTAACATGtgtttttatttc
acttttagtgccttaaaaataataataaaaactaCAAAGAAAAATTCATA
GAATGGTCAAATTAAAGATAGGAATCATCGGAGGAACTGGATTGGACAAT
CCAGAAATTTTCACCAACAAAAATGAAGTAAGTGTAACCACACCTTACGG
TGCTCCATCATCAAGCCTGATCACTGGCCAACTTCACGGTGTTGACGTGG
TCTTACTTGCGCGACATGGACGTCAACACGAGACAAATCCTTCCTCCATC
AACTATCGCGCGAACATCCATGCGCTTAAAGAGATCGGTTGTACACACGT
GCTGGCAACCAACGCGTGCGGTTCGTTGCGCGATGAATATCGTGTTGGAG
ACCTCATTATTTTGGATCAGTTCATTGATAAAACCTTCAAGCGTGAATGT
ACATTTTATTCAGGGTACGAGGGCGGACCGAAGGGCGTTATGCATATCCC
AATGGGACACCCTTTCTGTGAAGACACACGAAAATGTATGATTGAGGCGA
GCAAAGGATTCGGTTTCTCTTTCCACGAGAAAGGCACTATTGTGATTATC
GAAGGTCCGCGTTTTTCTACGGTAGCCGAAAGTAAGATGTTCCGTTTATG
GGGCGCCGATTTAATCGGAATGACGACAGTTCCGGAAGTCTGTTTAGCCA
AAGAAGCTGGACTTTGTTATTCTGCAGTTGCCATGGTTACTGATTATGAT
TCTTGGAAAGAAGATGAGCCTCATGTCAGTGTGGAAATCGTGGGCCAGAG
GCTACGTGATAACGCTGAGAAAGCGACGAAAGTTTTATTGAAAGCTGTCG
AGTTGATAGCGCAACGTGATTGGGATGACGTCATTAAACGTCATAAAGAT
GTCGTTGACGGTTCAGTTATGTGAATCGCGAAGAACATTTCTTCTATAAA
GGTTTCGGCAATTTTTAATACCGAAATTTTCTTTATGTGGGCACTAGGAT
ATATTTTTTGTACGTCAATTGTAGAATGATTCAAATTTAGTCAAATATCG
TTTAAATTATCGAAAGTCCCTATGAAAAATAGGGCAGAGAGGCACAAGTG
TTTATAATGAGATACACTTTTTTATGTACCATGTACACAAGGTTTCGAAT
ACCAAACAATTAAGAACAAGCTGAGAACATTTTAGGGCTTAATGGACTTC
AAAACACTCAGTTTTTtaagttttcacaaaaatacccgcaaattggtaaa
aattaAGAACACTTTTACGCTTAACTCAAAAAGTCGAGAATAAGCAATTT
CGAAAAGAACGCCTTGTATTATTCTGTACTGTGCTGTGATCCATATctga
ttgggcttttccagaaaaaaattttacccccactgttgaggatattgatt
tttcgaagtatcgaaccccctagatatccactcttaaatatatgcaaccc
cctggatatcctctcttataaagatgttTACCCCTcgatatcgtattttt
ttacttgaaaagacactttaccccctggatatccacttttaaacaaaaat
tgttaaccctttggatatccgatatccacggactatttctggaaaagccc
attactcaataacaataacaataacacTAACGGTTTCTTTGAGGTCTTTG
AGGTCGTTACTGTTCTTTTCTGTCCGCATAGTTTGATAAAAGATGATGCA
AGAAAGTTCGAAGAtcagatacacgtttttatttaagaaactagttttac
caagaagcctcaatgtttcttaagaaatcggccttttgagc Run BLAST on NCBI protein sequence of TCONS_00010927-protein >TCONS_00010927-protein ID=TCONS_00010927-protein|Name=TCONS_00010927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MVKLKIGIIGGTGLDNPEIFTNKNEVSVTTPYGAPSSSLITGQLHGVDVV
LLARHGRQHETNPSSINYRANIHALKEIGCTHVLATNACGSLRDEYRVGD
LIILDQFIDKTFKRECTFYSGYEGGPKGVMHIPMGHPFCEDTRKCMIEAS
KGFGFSFHEKGTIVIIEGPRFSTVAESKMFRLWGADLIGMTTVPEVCLAK
EAGLCYSAVAMVTDYDSWKEDEPHVSVEIVGQRLRDNAEKATKVLLKAVE
LIAQRDWDDVIKRHKDVVDGSVM Run BLAST on NCBI transcript from alignment at sc0000118:513634..515965- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010927 ID=TCONS_00010927|Name=TCONS_00010927|organism=Clytia hemisphaerica|type=transcript|length=2332bp|location=Sequence derived from alignment at sc0000118:513634..515965- (Clytia hemisphaerica)
GAAATTCAAGGTCTTAAGTAAAATTTTACGTACATGTGAAAAAAGCTTCA
GAGAAAAATTTTTGAAATTCTTTTGAGACCCTTTGAGAGATTATTTTTAA
ATTTTAGGTGATTTCTCTACTGATTTCAGTCTAACATGTGTTTTTATTTC
ACTTTTAGTGCCTTAAAAATAATAATAAAAACTACAAAGAAAAATTCATA
GAATGGTCAAATTAAAGATAGGAATCATCGGAGGAACTGGATTGGACAAT
CCAGAAATTTTCACCAACAAAAATGAAGTAAGTGTAACCACACCTTACGG
TGCTCCATCATCAAGCCTGATCACTGGCCAACTTCACGGTGTTGACGTGG
TCTTACTTGCGCGACATGGACGTCAACACGAGACAAATCCTTCCTCCATC
AACTATCGCGCGAACATCCATGCGCTTAAAGAGATCGGTTGTACACACGT
GCTGGCAACCAACGCGTGCGGTTCGTTGCGCGATGAATATCGTGTTGGAG
ACCTCATTATTTTGGATCAGTTCATTGATAAAACCTTCAAGCGTGAATGT
ACATTTTATTCAGGGTACGAGGGCGGACCGAAGGGCGTTATGCATATCCC
AATGGGACACCCTTTCTGTGAAGACACACGAAAATGTATGATTGAGGCAN
AATTAAAGATAGGAATCATCGGAGGAACTGGATTGGACAATCCAGAAATT
TTCACCAACAAAAATGAAGTAAGTGTAACCACACCTTACGGTGCTCCATC
ATCAAGCCTGATCACTGGCCAACTTCACGGTGTTGACGTGGTCTTACTTG
CGCGACATGGACGTCAACACGAGACAAATCCTTCCTCCATCAACTATCGC
GCGAACATCCATGCGCTTAAAGAGATCGGTTGTACACACGTGCTGGCAAC
CAACGCGTGCGGTTCGTTGCGCGAGGAATATCGTGTTGGAGACCTCATTA
TTTTGGATCAGTTCATTGATAAAACCTTCAAGCGTGAATGTACATTTTAT
TCCGGATACGAGGGCGGACCGAAGGGCGTTATGCATATCCCAATGGGACA
CCCCTTCTGTGAAGACACACGAAATTGTATGATTGAGGCGAGCAAAGGAT
TCGGTTTCTCTTTCCACGAGAAAGGCACTATTGTGATTATCGAAGGTCCG
CGTTTTTCTACGGTAGCCGAAAGTAAGATGTTCCGTTTATGGGGCGCCGA
TTTAATCGGAATGACGACAGTTCCGGAAGTCTGTTTAGCCAAAGAAGCTG
GACTTTGTTATTCTGCAGTTGCCATGGTTACTGATTATGATTCTTGGAAA
GAAGATGAGCCTCATGTCAGTGTGGAAATCGTGGGCCAGAGGCTACGTGA
TAACGCTGAGAAAGCGACGAAAGTTTTATTGAAAGCTGTCGAGTTGATAG
CGCAACGTGATTGGGATGACGTCATTAAACGTCATAAAGATGTCGTTGAC
GGTTCAGTTATGTGAATCGCGAAGAACATTTCTTCTATAAAGGTTTCGGC
AATTTTTAATACCGAAATTTTCTTTATGTGGGCACTAGGATATATTTTTT
GTACGTCAATTGTAGAATGATTCAAATTTAGTCAAATATCGTTTAAATTA
TCGAAAGTCCCTATGAAAAATAGGGCAGAGAGGCACAAGTGTTTATAATG
AGATACACTTTTTTATGTACCATGTACACAAGGTTTCGAATACCAAACAA
TTAAGAACAAGCTGAGAACATTTTAGGGCTTAATGGACTTCAAAACACTC
AGTTTTTTAAGTTTTCACAAAAATACCCGCAAATTGGTAAAAATTAAGAA
CACTTTTACGCTTAACTCAAAAAGTCGAGAATAAGCAATTTCGAAAAGAA
CGCCTTGTATTATTCTGTACTGTGCTGTGATCCATATCTGATTGGGCTTT
TCCAGAAAAAAATTTTACCCCCACTGTTGAGGATATTGATTTTTCGAAGT
ATCGAACCCCCTAGATATCCACTCTTAAATATATGCAACCCCCTGGATAT
CCTCTCTTATAAAGATGTTTACCCCTCGATATCGTATTTTTTTACTTGAA
AAGACACTTTACCCCCTGGATATCCACTTTTAAACAAAAATTGTTAACCC
TTTGGATATCCGATATCCACGGACTATTTCTGGAAAAGCCCATTACTCAA
TAACAATAACAATAACACTAACGGTTTCTTTGAGGTCTTTGAGGTCGTTA
CTGTTCTTTTCTGTCCGCATAGTTTGATAAAAGATGATGCAAGAAAGTTC
GAAGATCAGATACACGTTTTTATTTAAGAAACTAGTTTTACCAAGAAGCC
TCAATGTTTCTTAAGAAATCGGCCTTTTGAGC Coding sequence (CDS) from alignment at sc0000118:513634..515965- >TCONS_00010927 ID=TCONS_00010927|Name=TCONS_00010927|organism=Clytia hemisphaerica|type=CDS|length=1644bp|location=Sequence derived from alignment at sc0000118:513634..515965- (Clytia hemisphaerica)
GCGAGCAAAGGATTCGGTTTCTCTTTCCACGAGAAAGGCACTATTGTGAT
TATCGAAGGTCCGCGTTTTTCTACGGTAGCCGAAAGTAAGATGTTCCGTT
TATGGGGCGCCGATTTAATCGGAATGACGACAGTTCCGGAAGTCTGTTTA
GCCAAAGAAGCTGGACTTTGTTATTCTGCAGTTGCCATGGTTACTGATTA
TGATTCTTGGAAAGAAGATGAGCCTCATGTCAGTGTGGAAATCGTGGGCC
AGAGGCTACGTGATAACGCTGAGAAAGCGACGAAAGTTTTATTGAAAGCT
GTCGAGTTGATAGCGCAACGTGATTGGGATGACGTCATTAAACGTCATAA
AGATGTCGTTGACGGTTCAGTTATGTGAATGGTCAAATTAAAGATAGGAA
TCATCGGAGGAACTGGATTGGACAATCCAGAAATTTTCACCAACAAAAAT
GAAGTAAGTGTAACCACACCTTACGGTGCTCCATCATCAAGCCTGATCAC
TGGCCAACTTCACGGTGTTGACGTGGTCTTACTTGCGCGACATGGACGTC
AACACGAGACAAATCCTTCCTCCATCAACTATCGCGCGAACATCCATGCG
CTTAAAGAGATCGGTTGTACACACGTGCTGGCAACCAACGCGTGCGGTTC
GTTGCGCGATGAATATCGTGTTGGAGACCTCATTATTTTGGATCAGTTCA
TTGATAAAACCTTCAAGCGTGAATGTACATTTTATTCAGGGTACGAGGGC
GGACCGAAGGGCGTTATGCATATCCCAATGGGACACCCTTTCTGTGAAGA
CACACGAAAATGTATGATTGAGGCGAGCAAAGGATTCGGTTTCTCTTTCC
ACGAGAAAGGCACTATTGTGATTATCGAAGGTCCGCGTTTTTCTACGGTA
GCCGAAAGTAAGATGTTCCGTTTATGGGGCGCCGATTTAATCGGAATGAC
GACAGTTCCGGAAGTCTGTTTAGCCAAAGAAGCTGGACTTTGTTATTCTG
CAGTTGCCATGGTTACTGATTATGATTCTTGGAAAGAAGATGAGCCTCAT
GTCAGTGTGGAAATCGTGGGCCAGAGGCTACGTGATAACGCTGAGAAAGC
GACGAAAGTTTTATTGAAAGCTGTCGAGTTGATAGCGCAACGTGATTGGG
ATGACGTCATTAAACGTCATAAAGATGTCGTTGACGGTTCAGTTATGTGA
ATGGTCAAATTAAAGATAGGAATCATCGGAGGAACTGGATTGGACAATCC
AGAAATTTTCACCAACAAAAATGAAGTAAGTGTAACCACACCTTACGGTG
CTCCATCATCAAGCCTGATCACTGGCCAACTTCACGGTGTTGACGTGGTC
TTACTTGCGCGACATGGACGTCAACACGAGACAAATCCTTCCTCCATCAA
CTATCGCGCGAACATCCATGCGCTTAAAGAGATCGGTTGTACACACGTGC
TGGCAACCAACGCGTGCGGTTCGTTGCGCGATGAATATCGTGTTGGAGAC
CTCATTATTTTGGATCAGTTCATTGATAAAACCTTCAAGCGTGAATGTAC
ATTTTATTCAGGGTACGAGGGCGGACCGAAGGGCGTTATGCATATCCCAA
TGGGACACCCTTTCTGTGAAGACACACGAAAATGTATGATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010927-exon-sc0000118-1575043694:515320..515965 | TCONS_00010927-exon-sc0000118-1575043694:515320..515965 | Clytia hemisphaerica | exon |
| TCONS_00010927-exon-sc0000118-1575043694:513634..514878 | TCONS_00010927-exon-sc0000118-1575043694:513634..514878 | Clytia hemisphaerica | exon |
| TCONS_00010927-exon-sc0000118-1510915933:515320..515965 | TCONS_00010927-exon-sc0000118-1510915933:515320..515965 | Clytia hemisphaerica | exon |
| TCONS_00010927-exon-sc0000118-1510915933:513634..514878 | TCONS_00010927-exon-sc0000118-1510915933:513634..514878 | Clytia hemisphaerica | exon |
| TCONS_00010927-exon-sc0000118-1491911889:515320..515965 | TCONS_00010927-exon-sc0000118-1491911889:515320..515965 | Clytia hemisphaerica | exon |
| TCONS_00010927-exon-sc0000118-1491911889:513634..514878 | TCONS_00010927-exon-sc0000118-1491911889:513634..514878 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:513634..515965 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0017061 | S-methyl-5-thioadenosine phosphorylase activity |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009116 | nucleoside metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009116 |
nucleoside metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0017061 |
S-methyl-5-thioadenosine phosphorylase activity |
Blast
BLAST of TCONS_00010927 vs. Swiss-Prot (Human)
Match: MTAP (S-methyl-5'-thioadenosine phosphorylase OS=Homo sapiens GN=MTAP PE=1 SV=2) HSP 1 Score: 306.99 bits (785), Expect = 8.506e-99 Identity = 145/262 (55.34%), Postives = 184/262 (70.23%), Query Frame = 2
Query: 236 TGLDNPEIFTNKNEVSVTTPYGAPSSSLITGQLHGVDVVLLARHGRQHETNPSSINYRANIHALKEIGCTHVLATNACGSLRDEYRVGDLIILDQFIDKTFKRECTFYSGYEGGPKGVMHIPMGHPFCEDTRKCMIEASKGFGFSFHEKGTIVIIEGPRFSTVAESKMFRLWGADLIGMTTVPEVCLAKEAGLCYSAVAMVTDYDSWKEDEPHVSVEIVGQRLRDNAEKATKVLLKAVELIAQRDWDDVIKRHKDVVDGSVM 1021
TGLD+PEI + E V TP+G PS +LI G++ VD VLLARHGRQH PS +NY+ANI ALKE GCTHV+ T ACGSLR+E + GD++I+DQFID+T R +FY G +GV HIPM PFC TR+ +IE +K G H KGT+V IEGPRFS+ AES MFR WGAD+I MTTVPEV LAKEAG+CY+++AM TDYD WKE E VSV+ V + L++NA KA +LL + I +W + + K++ SV+
Sbjct: 18 TGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLKNMAQFSVL 279
The following BLAST results are available for this feature:
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