TCONS_00010924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010924
Unique NameTCONS_00010924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010924 ID=TCONS_00010924|Name=TCONS_00010924|organism=Clytia hemisphaerica|type=transcript|length=2225bp
ctttcaGTGGTGCACTTGAAACTATTGGTGAACTTGCTGCAGGTTGTGTa
aaagatgatgaaaatgatgtgTTTTGTTTATGATGTGATGGTTGCATAAA
AGTATTGATGGGTGGCGgctttattttcatctgattATCGATAACTCTTT
GAAGACGAGGTGgtaaattgtttgttttttctttattcataaaTGTGTTA
AAAGTCTTTGTAGGAGGCCTATTTGCTATAGCAGGACTTTTTGAAAAGAA
TGGTTTTGATGAGCCTACTGCACTTTGTTGAAAGTTCCTGTTGAATGTAA
AACCTCCTCGACCACCACGAGTAGAAGGACGAGCAACACGAGGCCCTGAA
AATCTTCGGACTGGAAAAACAactgcttttctttttttcttttttgtctt
tttcttctgaccagccactaGTCTATGAATGTGGGCTGTTTCATCTGTTG
GTATAGCCTTTACATATAAATGTCCACCCATTCCTGGGCTCATCGTAAAA
ACATTTGAATAGTCTGTTATAAATTGTTGAATGGTTCCATATCCCATCTC
CTTGATTTTTAGCTTCTCAAATACAGTCTCTTCATATTCATATGCGAGAG
AATGCAAAGGTATTCCAACTTTTGCTTGAGCCGTTAAAATAGAACTTAAC
AAGCTAACAGTGCTTTTACGAAGCTTTTCAACATCAGGTGTTACTCCAGC
CATTTTTAGCTTTGATGAAAGCGAAAGTTCTGTTCAACAGTCCAAGCCCA
CACACAAAGGTCAGGCAAATGCAATCCAATGCCAATCTCAAATCAAATCT
CAAGGAACAAACGTCTTATAATATCTTCCcagttcttattaaaaaacaaa
cgAAAGGATGGAATGAAAGAAAACAACTTACTAACGATGCTTGACAGTTA
AATAACCCCTACAAAAACTTTTGATCTTTTAAACAATGCAGACAATGcaa
ggaattttctttcgtGTTCGCCATCGCAGAATTTCTTTCCGTCTAAACTT
TTTTCATGCACGTTGGTCGGCTCCatctgaaattttaaagctgaCGCCTG
CAGaaaaacactttcgatttcaaagtTCACCAAAAGTTCGaacagaaaaa
atttaaaaaacatgaGTTCCAAAGAAGGGCTCACAAGATTCTACAGAGAC
TTTCAAAGAATTTGTAAACAATGGCCTGTAGATGCATCAAAGACTGGAAG
AGACTTCGGGGAACATTTGAGGAATTCATTTGATCCTAAATTCAAACAAG
GTGCTTTTGAGgagCTTCAAGCTGAACGAACGTTGAATGCTTTGATGAAA
ATCAGTACAAACTATTATAGAAACAAGTATCCTAGAAAAAGAGAGATTGC
ATATTCAGGAGAAAATCCAGATGCATACAAAGACACCCTCTCCAGCAAAT
ATCAGTCAAATGTGGAGCCAAAGAAAACTTTATTGGAACGGTTGTTAGGA
GCAAAGAAGATAGCTGAACGTGGACGAGACCAGTgaaatacagtgtgtcc
caaaatttcttctttgtAACTTAGAAAGATGGTTTTCATGGCACAATATG
TATTTATATGAGTTTGGTTTGCTGTGTGAATTAAATGAATGAGTTGTTCG
TTGGCTTGAGGCATGATATTTGAATATGGCACCATGTCGGAAGAATATTT
TCATTCATAAAGATGTATATATAATGGATCTTTTATTGTCTTGGATAGAA
CGGTCTAAACATATGCACAATATTGCATATGGTGGACTGAGGATGATCAC
GTGTCCAAAAAAGATTatgttatttttataaattttatacaaTATAGTTT
ATGAAACTGAGCTGAACTGAGATGTATTTTgtattatgttttcattttcc
cctCATAAAAtcaactactttaggcgtacaaactttcgcgagcagaaact
ttcgcgattttcgcgaattttggcccttttcgcgaaagtaaatgtcttaa
aaaattctagaaagggccattcgcgaaagtttatgctcgcaaaaaattct
tgacaaaataaaaaatctgtaaaacttcaaactttgaataaaatgtaact
tttttggcactttttagcctgctaaaagactaataaggcgagaccaatta
aatttgttgttctacgggcagatcgttagcaaaatatgagtcggtcggtc
ggtaaaataaaaataagattttcattaatcaagaaaGATTGTAAGTAATA
CTTTCAAATAATCTTGGtcgaaaat
Run BLAST on NCBI

transcript from alignment at sc0000118:409964..416036-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010924 ID=TCONS_00010924|Name=TCONS_00010924|organism=Clytia hemisphaerica|type=transcript|length=6073bp|location=Sequence derived from alignment at sc0000118:409964..416036- (Clytia hemisphaerica)
CTTTCAGTGGTGCACTTGAAACTATTGGTGAACTTGCTGCAGGTTGTGTA
AAAGATGATGAAAATGATGTGTTTTGTTTATGATGTGATGGTTGCATAAA
AGTATTGATGGGTGGCGGCTTTATTTTCATCTGATTATCGATAACTCTTT
GAAGACGAGGTGGTAAATTGTTTGTTTTTTCTTTATTCATAAATGTGTTA
AAAGTCTTTGTAGGAGGCCTATTTGCTATAGCAGGACTTTTTGAAAAGAA
TGGTTTTGATGAGCCTACTGCACTTTGTTGAAAGTTCCTGTTGAATGTAA
AACCTCCTCGACCACCACGAGTAGAAGGACGAGCAACACGAGGCCCTGAA
AATCTTCGGACTGGAAAAACAACTGCTTTTCTTTTTTTCTTTTTTGTCTT
TTTCTTCTGACCAGCCACTAGTCTATGAATGTGGGCTGTTTCATCTGTTG
GTATAGCCTTTACATATAAATGTCCACCCATTCCTGGGCTCATCGTAAAA
ACATTTGAATAGTCTGTTATAAATTGTTGAATGGTTCCATATCCCATCTC
CTTGATTTTTAGCTTCTCAAATACAGTCTCTTCATATTCATATGCGAGAG
AATGCAAAGGTATTCCAACTTTTGCTTGAGCCGTTAAAATAGAACTTAAC
AAGCTAACAGTGCTTTTACGAAGCTTTTCAACATCAGGTGTTACTCCAGC
CATTTTTAGCTTTGATGAAAGCGAAAGTTCTGTTCAACAGTCCAAGCCCA
CACACAAAGGTCAGGCAAATGCAATCCAATGCCAATCTCAAATCAAATCT
CAAGGAACAAACGTCTTATAATATCTTCCCAGTTCTTATTAAAAAACAAA
CGAAAGGATGGAATGAAAGAAAACAACTTACTAACGATGCTTGACAGTTA
AATAACCCCTACAAAAACTTTTGATCTTTTAAACAATGCAGACAATGCAA
GGAATTTTCTTTCGTGTTCGCCATCGCAGAATTTCTTTCCGTCTAAACTT
TTTTCATGCACGTTGGTCGGCTCCATCTGGTCTGTAATTTATTTACAAGT
TTTTGGCTCATTATTTTCTTCTTCGTATGCCAAAAAGATTTTATAATTTA
GGGGATAAAGTGTTTTAATCATATATAACATGTTATCCATCCTTAAAACA
AGGTTTACTCTCATACTTTACATGCCTTTAAAGTTTAATAAGATTAAGTA
TAAAGGTTTATTCTCAAATAATTGGTCTGTGTTTTATCCTTTTTTGTTTA
CAGAAATTTTAAAGCTGACGCCTGCAGAAAAACACTTTCGATTTCAAAGT
TCACCAAAAGTTCGAACAGAAAAAATTTAAAAAACATGAGTTCCAAAGAA
GGGCTCACAAGATTCTACAGAGACTTTCAAAGAATTTGTAAACAATGGCC
TGTAGATGCATCAAAGACTGGAAGAGACTTCGGGGAACATTTGAGGAATT
CATTTGATCCTAAATTCAAACAAGGTGCTTTTGAGGTAGATTACGTTGGT
TTTATACCAGACGATCTCAATCGAACGGAATCGACGATCGAACCAGTTGA
ACCAAATCGAACGCAATCGACCGATTGAAATTCGATTGTCGAACGCAATC
GAATCACAATCGAATGTCAAAATTCTGGGTAATATTTGATTGGTTCGATT
GTTGTTCGACTGCTGGTTTGATCGTCGATTTCGTTCGATTGAAATCGTCT
GGCTTTATTCTTGCAGCTTCCCAACATCCAAGCTCTCAAACATCACAAGC
CAAATGAAATTACTTTCGATTTCCAGTAGAAATTATGCGATGAACAATCT
CAGAGTCAATGAATCGACGGTCGAACGCAATCGAACATAAATCGAACGCA
ATTGAATATCAATCGAATCTGAAAATTGCGGTAATATTCGGAGATTGAGA
TTTGATTGCGTTCGACAATCGAATTTCAATCGGTCGATTGCATTTGATTT
GGTTCGACCGGTTCGATCATCGATTCCGTTCGATTGAGATCGTCTGGTTT
ATACTATTATGATATGCTTCACCAGCTAAAAATATTTTGCACAGTTGAGG
CTGATATTTTTTTGGGCATAAAGAGAGGGTTAAACTCAGTGGATTGTTTC
GGATTGAAATGGCAAGTATCAAATTTCTTAGCAATAAAATGTTAGTAAAT
CAGCTGCTTGGAAAAATCTAGCTGAGTCCCATCTTTCTTTTTCTAGCCAT
GACCCTGCCAACGCAATAGACTTTACGAACACCAGACTCACAAAGTCCGG
TGTTGGATGAGGATACTTGACGAGACTTGAGTCCCGTGTGTCCGGTGTGC
ATTATTTTTGTTTTGAAGCAAACTTTGTCCGGTGCCCAGACACAGAACGT
AAAAAAATTATCACCGGAACTATAACACCGGACAAAACGGTGGACGCGGT
GTGGCTGAGGGATATCTTTTGGCCCCAGCAGTTTGGCTGATAGTATAAAC
ATCATACCGTGAGTGGTCCTAAATCCGACAGCCCTGCCTAAATCCGATGG
GGTCTTTCAAAGATACAAACTAAAATAAAAATAAACTTTTTGCTATAACG
CAATGAAGATACCAAAGTGTCAACTAAACTGAGAGATTTGATACACTGAA
CCAATTGAACCAAAACATTAATTGCTTCTTATACAAAGGATAATTTTTAT
TACAAAATTGTCAACGTTTTAAACACGAGCAACGGATTCAGAATAATAGT
TTTAATTATTTTTACAACTCATACTTTTTCTATCACATTAATTGACATCT
GACATTTTAGTCATCTTGTTAGATGTTTTGTTTCAAGAGTTCTTGCAATA
TAGTTTATTGTTCAACTTGGAGAGGGAATGTTTGTAAACATAGAATTTTT
TTTCATAGCAGTTATTTGGGGGGTCGGATTTAGGCAGGGCTGTCGGATTT
AGGACCACTCATGGTATTGGGAACAAAGTTGTACAACTTTAAAAAGATCA
TTAGGCGAAGGGAAGCTAGGTATTAGTTTATTGTTACAATGAATTCAAAA
TTGGATGCGGCAAAATTTCATTATTCATTATTTTACCATAAACTCTCCCA
CGCAAACGATTGAATGTAAACAACAGTAGAACGTCTTCATTCTGTACCAG
CGTGCGCTTGTATCCTTTATTTCACATTGGGCGCGCAAGTTGCAATGATA
ATCGTATCTTTTGTTTCACATTGGGCGCTTGAGTGGCGATGATACAAAGT
GTGTGGATGAAATCAGTTGCGTGAAGGCTTCGGGAGACGATAACGTCACA
GCTTCATGCTGTTCAGAGCCATTGGTAAGTCATGTATTGATGTTTTTCAT
ATTTGAACTGAAAAAAATAGAAATAATGAAAAATTTTAAGCGGTAGCTCT
AACACACGCGGGCGGGTAACGGTAAACTAATACCTGACTTCCCTTCGCCT
TATGAAAAAAATATATATTTTGAAATTTTGCTGACGTCAACACTTTATTG
CAAAATTTCGTATTTTGCTGATTTCTGTTGACGTTAGCAAGATTTGAAAA
AACATTTGATTCAAAAATGATCTATTTAATGATATGCAACTTTGGTCCAG
ATTTCATGTTTATACCATCAGCCAAACCGGTGTTATTCAAAAAACAAGTC
AGCATTTTTTAATTTTTCTTAATATCTTTTTTTGGGTGTAAAAATTAATA
TGACACAGCCAGTTAAGTGATCTCCACTCCAATATGCTTCTTTCAGTGTA
CAGGCTATCTCTAAAGCTCTAACAGCATCTAATAACATGAAAACCAGAAT
ATGAAAGATGTTTTGGCGGATGCAACAGTCTTTTGAATAACTAATTACTC
CACATACATTACTTTCCCTCAGCCAATAAAAACACAATAAATTATCTTGT
CTCTAGGTAACTGCTGTGGAGTAATTAGTTATCAAAAGACCTTTGCATTT
GCCAAAACAACCATTCTTCAATGGGAATCAAAGTGCACTTTAAAAACATC
AATATGTCAGATCCAACAAAATTTAAAATGGCACTGTCATCATTGACTTG
ACAATAAAACGAAGGATTTTCTGTCAAGAGAGCCTTGCAAACATTCCAAC
AACTTCCATCAAAATGATCTGCCACAGCTAAGTCTACCACTTTAGCGCGG
TCTTAGAATTGAGCCGAGAACGCTTGCATTTTCTAAAGCGNCACTTTAGC
GCGGTCTTAGAATTGAGTCGAAAACGCTTGCATTTTTTAAAGCAAAGTGT
ACACAAAGTGATTCTAGCTTTACGATAGTGCCATCTATTCAAAATTTGCT
TTTTTTAAATAAGTGAGTGCCTTGTTTTTATTTTAGGAGCTTCAAGCTGA
ACGAACGTTGAATGCTTTGATGAAAATCAGTACAAACTATTATAGAAACA
AGGTAACTTTCTGAGAAGATAATTTATGGATGGCATATTCTTTAGATTAA
ATTCTAGTTCGGATTGTTAGTAGGCTGTTTCTTGGCTTTTCTTATTTTTT
CAATGAATAGCAATCATAACAACTTACTGATATTATCAGGCTGTTTATAT
TTAATGTAGGAGAAGATTTAAAGTGATAAGTTGATAAAACCTTCATATAT
TTTTTAGACAAATGAAAAATATAATCTTAAATATTTCTTTAGTATCCTAG
AAAAAGAGAGATTGCATATTCAGGAGAAAATCCAGATGCATACAAAGACA
CCCTCTCCAGCAGTAAGAGCAATATGAATAATTTTTTTTAGTGAAAATTA
GCTCCCTTTTAAAACAAAGCACAAACATCCCTGTCTCAGTGATTGTATGA
GAATATCTTTTGTTTTGGTAGGTAATGAAATTTCAATCACTGGGTCTGTG
ATACAGGGATGTTTATAAAACTAACCTTGGTTTTATGGAAGAACTATCTT
GTTCACAGATTCTAATCAATCATGTCAGTCATGTTTTTTTGCCAAAGATC
CATTTTATTCTTATCTTGATTTATACTGAACTAGGGAGAACAGTCAGACG
TGTAAAATAAATAGTCGATTTGTTTAATTGCCTTGTGAGAAACAGATACT
TAATATTTTTAAAGATGGTGTCAGCGCCTCAAAACAGTGGTTTCAAATTC
CTGATTATAAAGTGCCTTCAACAAAGGGGGTTAATGTGTTATATCGTTTT
GTTTTTTTCTAAGACCCTGTGAAAATAATTGAAGGACTATCTGAAACCCT
AGATTGGGCTATCCACATATAAAATACCGTCTCTATTTTTGCTTGAGTGT
CATCATCAGTAAAAGTGGAATTACCGTTGATAATATTTATTATAGAATAT
CAGTCAAATGTGGAGCCAAAGAAAACTTTATTGGAACGGTTGTTAGGAGC
AAAGAAGATAGCTGAACGTGGACGAGACCAGTGAAATACAGTGTGTCCCA
AAATTTCTTCTTTGTAACTTAGAAAGATGGTTTTCATGGCACAATATGTA
TTTATATGAGTTTGGTTTGCTGTGTGAATTAAATGAATGAGTTGTTCGTT
GGCTTGAGGCATGATATTTGAATATGGCACCATGTCGGAAGAATATTTTC
ATTCATAAAGATGTATATATAATGGATCTTTTATTGTCTTGGATAGAACG
GTCTAAACATATGCACAATATTGCATATGGTGGACTGAGGATGATCACGT
GTCCAAAAAAGATTATGTTATTTTTATAAATTTTATACAATATAGTTTAT
GAAACTGAGCTGAACTGAGATGTATTTTGTATTATGTTTTCATTTTCCCC
TCATAAAATCAACTACTTTAGGCGTACAAACTTTCGCGAGCAGAAACTTT
CGCGATTTTCGCGAATTTTGGCCCTTTTCGCGAAAGTAAATGTCTTAAAA
AATTCTAGAAAGGGCCATTCGCGAAAGTTTATGCTCGCAAAAAATTCTTG
ACAAAATAAAAAATCTGTAAAACTTCAAACTTTGAATAAAATGTAACTTT
TTTGGCACTTTTTAGCCTGCTAAAAGACTAATAAGGCGAGACCAATTAAA
TTTGTTGTTCTACGGGCAGATCGTTAGCAAAATATGAGTCGGTCGGTCGG
TAAAATAAAAATAAGATTTTCATTAATCAAGAAAGATTGTAAGTAATACT
TTCAAATAATCTTGGTCGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006133XLOC_006133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010924-exon-sc0000118-1575043694:415008..416036TCONS_00010924-exon-sc0000118-1575043694:415008..416036Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1575043694:414552..414783TCONS_00010924-exon-sc0000118-1575043694:414552..414783Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1575043694:411685..411750TCONS_00010924-exon-sc0000118-1575043694:411685..411750Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1575043694:411375..411444TCONS_00010924-exon-sc0000118-1575043694:411375..411444Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1575043694:409964..410791TCONS_00010924-exon-sc0000118-1575043694:409964..410791Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1510915933:415008..416036TCONS_00010924-exon-sc0000118-1510915933:415008..416036Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1510915933:414552..414783TCONS_00010924-exon-sc0000118-1510915933:414552..414783Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1510915933:411685..411750TCONS_00010924-exon-sc0000118-1510915933:411685..411750Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1510915933:411375..411444TCONS_00010924-exon-sc0000118-1510915933:411375..411444Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1510915933:409964..410791TCONS_00010924-exon-sc0000118-1510915933:409964..410791Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1491911889:415008..416036TCONS_00010924-exon-sc0000118-1491911889:415008..416036Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1491911889:414552..414783TCONS_00010924-exon-sc0000118-1491911889:414552..414783Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1491911889:411685..411750TCONS_00010924-exon-sc0000118-1491911889:411685..411750Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1491911889:411375..411444TCONS_00010924-exon-sc0000118-1491911889:411375..411444Clytia hemisphaericaexon
TCONS_00010924-exon-sc0000118-1491911889:409964..410791TCONS_00010924-exon-sc0000118-1491911889:409964..410791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:409964..416036 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.2265	33.7603	22.4429	17.6125	19.4263	13.1067	20.1879	21.1223	21.1734	18.0392	16.7247	14.2332	11.691	11.4864	14.2234	12.7146	38.3119	35.6393	8.8513	11.251	40.0394	35.4031	34.6353	32.5856	11.4191	12.4124	25.3001	22.4339	18.884	18.5484
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025605OST-HTH/LOTUS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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