TCONS_00010921 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010921
Unique Name	TCONS_00010921
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	844

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000118:322285..326070-

transcript sequence

>TCONS_00010921 ID=TCONS_00010921|Name=TCONS_00010921|organism=Clytia hemisphaerica|type=transcript|length=844bp
AAATTGCATTGTATGGTTTCTGGAGTGAATGCTTTTGCAGCCGGTTTGCC
AGGATACGCCCAAAACAGAGAAGGCCAAGAAAAAGTCCACATCAGCCAAG
CAGGAGAAACAGATCCACCCAAAGTCAAGAAAAGCCTCGCAACTAGCAAA
AACCATTCACCACTCAGAGAAAATACAACAGCGAAAAGAAgatttaaatt
caaaacaaagcatACTTAaggAAAAGATATTATGGTTTAAAGATATTTTG
GAAGAGGACAAAGATAGATATTCTCTTGCTGAAGTTTCCAATATTGTTGC
ACAATACATAAATCGATTTGATGAGCGGCTAAATGAGATAAATGAACAAA
ATGAATTGAATAAAGCGCGCAGCCGCCACGGACGTTATCACGCGGCTGAA
GAAGAAGCCATCAAAATGGTAAAAACGAAGGAACAAGAATTATTCAGTGC
TGGAAGATTTGaAGCACCCGATTTAACAAACACAGCAAATGTTACATATC
TCAGgAAATGGGATTGCCAAACGAAGACACTGCCGAAtatcaaattgaaa
aatataaggGAGATAAAAGAATCGACGGAAAGTAGTAAAAATGTGATGGA
GGAATGATATGataatcaaaactttttttcacaataaaattttattaaac
aTCTAATGGAAATCTCTCTCGTTACATTTTTCTGCtcacttcagttaaca
atgccttatcaACCTTACTCCAAAACTCGAGATTTCTTTCTCCCACAAAT
TTGTATTCCCCGTAcgtattcgagttatagagactccactgtttATTATA
GCTAAGCGCAGTTCAACATTTCTCCATGCTCTCGAGGGCGTTTT

Run BLAST on NCBI

transcript from alignment at sc0000118:322285..326070-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010921 ID=TCONS_00010921|Name=TCONS_00010921|organism=Clytia hemisphaerica|type=transcript|length=3786bp|location=Sequence derived from alignment at sc0000118:322285..326070- (Clytia hemisphaerica)
AAATTGCATTGTATGGTTTCTGGAGTGAATGCTTTTGCAGCCGGTTTGCC
AGGATACGGTTGGTTGACCATTTAAGTCTTTGATACGCCATACTTCAGCA
GATAATGTTGTGTTATTGTGGTACCTTTCTAGTACACCTCAAGTATAACA
GACCTTTCCTGTAATTTGCAAAACAGTTACTCTCATTGGTCTCTGGATGT
AAACAAATATCTGTTTGACTGCATTTCCTTAGGGAAAGTTAAAGTTCTTG
AGCTTTTCTTAACCCTTTGAGCATCTTGTTGGTATCATGTAATTTCCGCT
TGAAATTACCCTTTTTACCAAAATCAGCCCTAGAATACTGTATCTAGTGA
TTGAGAAATGCTTTTAACTTCTGCTCTTAATTTTCACAAAAATGAAAGTG
AAAAGTACTGAAAATGAAAGTACTGGCACTCAGACAATTACTTCAGTTAG
GGAATCCAGTGGTTGATGATTTTTTTTTTATACTTCAGCCCAAAACAGAG
AAGGCCAAGAAAAAGTCCACATCAGCCAAGCAGGAGAAACAGATCCACCC
AAAGTCAAGAAAAGCCTCGCAACTAGCAAAAACCATTCACCACTCAGAGA
AAATACAACAGTAAGTAATGCGTTTACTGGGTGGATAGTAAAAGCAAATT
TCCTGAATAATTATTTTGTGTAATGAAAATTCATCTCTGTAATAATTATT
TGTTGTATAATATTATAGTACCTATGATTGAAGTATCCTGCATTGCCTGA
GTACAACTTTAAAAGATGAGGAAACTGGAATTGATTTTTTTTACCAGGAA
GAATTACTTTAGAATGTTGTTACATTTATAAGATAACATCTCTATATACC
TCTATATACCCATCCACCCTTCTGAACAAAGAATCTTTCAAGTCATTTAC
TTGTAAATTGATTATACCTTACTCCTCAAAACCTGACCACACTGAATGTG
TATAGTAATTTTAAGTCTTCTTTCCACCATAAAAACTGTTCTCTAATTTT
ATTTTTACTTTCACTTTAGGCGAAAAGAAGATTTAAATTCAAAACAAAGC
ATACTTAGTGAGTAGGCTACTTTCATTCTTCATCAGAGATTTACCACCTA
GGACTGAACTAGAGTCTGCTTGTGGCTGAACATTGCTTTTTGATAATTTT
TTATGACGCTTAGTCCAGTGAAGTAGACTAGGAGCATTTGATGAGGTGGC
CATTTTGAAAGAAAATGTTAAACAAATATTGAGAAACAAACATCAATAAT
AGATTCTCAATCCCTTCCTTATTTTCAAATAAAATATACTGCAAATTAAT
TAAATGCACCACTTAATTGCACCATCTGGTCTATAAAAATAGCTTTTAGT
GGACCCTGGGCTATCTAGGACTGGTTACCAGTACAGTGCTCTGTGTAGCA
TATGTTTTTCTAATTGCTATAAAAATGAAATAAGTATTTTACCGACCTTA
TTTTCGTTGCCTCGTGACACTCCATATCGTGACACTATTTATCCACAAAC
TTTTTCATCCCCCCTGGGATTTTAAGGATTTTTAGCAATACTTTTCACAT
GTTTAGTTAAAACAACGAGAATTAGTGACCGTAAAGAAATGGTTAAGAGA
ATAATCAGAAGCTTTTACTAAACTCTTATGATGACCTCTTGTGAGTGAGG
TCGAAAAATATTGTTTTTGATAAACAAAACCAAGCTTCTCGTCATTCTCT
TTACCATTAAACTGTTCGCCCAAGGAAACATTTTTCTATATTGGTTGTCT
TTGTATTGAATTATATTATCTTATATTATTATTATTTATGTTCTCAACTT
CAGTTGAGCTAGAATCTGAGAATGCCTGTCTGTCCGTCTGTCTGTGTGTC
CCAGATACTTTGTTATCTCATATTATTAATTTTTTTCTTTAGAGGAAAAG
ATATTATGGTTTAAAGATATTTTGGAAGAGGACAAAGATAGATATTCTCT
TGCTGAAGTTTCCAATATTGTTGCACAGTAAGCTCAAATGTTTTTCAAAT
CGGTCAAAATTTCAAGCATGCGTAAATGAATTAAATGCAAGAATCAACCT
TTAAAGAAACTTGGTTCAGAAAAAAAAGAAAAAGAAATACAATGATATTA
ACCTATAACCATTCAAATTTAGTGTCATTTAATAAAGTTATCTCATAAGA
GCTAATCAAGTTTCTAAAACTCATAAACTCACAAAGACGGGGGAAACTTC
GTCTGTATAAGTATAGTGAAAACTTTGTAAATGGATCACCCCTAGCACTC
TGGCTCTAGGTGTATTTGAATTACTGAACTTTTTAAAAGTTTTATTATGT
CCTAAAACCTAGGAACCTAGCTAAACAAGGTTAGTTCCTGGTACCAATTT
TAAAGCAGAAGGTTTAATTCTTTTACTTGATGTTAAATCTAGACGTTTTC
TGTGATCTAAAATAGCTGTTCCGTATCATATATTCAGATTAGATTTTGCA
CAATGCTCTTATTGTATTATGTAAAGTAAAATCTCCATTACTTCACAGAT
ACATAAATCGATTTGATGAGCGGCTAAATGAGATAAATGAACAAAATGAA
TTGAATAAAGCGCGCAGCCGCCACGGACGTTATCACGCGGCTGAAGAAGA
AGCCATCAAAATGGTAAAAACGAAGGAACAAGAATTATTCAGTGCTGGAA
GATTTGGTAAGACTCGTTTCGTAGGATTGTACACCTCACTTCTCAATCAC
TTGTTTGTTTAAGGGTAGTCACAGCCAATGGGCTTAGGTCATGCAGTGTA
AGGGTGGAAATTTCAGCAATTCTAGAAAAAATCGCAAGTTTTTTGCCCGA
GAATTCAGATTTTTTGCTCTAAAAAAATGCACTGTAAGGGTAAGGGAATT
TCACGATTTTTTTGCTGCACCTCCTCGCCCGGGTCGTCTTTAACCGAATG
AATGATCGAATGAGTTGATANACGATTTTTTTGCTGCACCTCCTCCCCCG
GGTCGTCTTTAACCGAATGAATGATCGAATGAGTTGATAAAGGAAACCAA
TACCGTTTTACTGAGTGAGATTGATTTTATGATTTTGTAACATGTGTTTT
TGTTCTTTTTTTCAGAAGCACCCGATTTAACAAACACAGCAAATGTTACA
TATCTCAGGTATGATTAGTTCTTCGTTTTATTTCTTAATTTTGGCTTAAA
ACACTACAAAAAACGTCTTTGAAAAGTCCTTGAGTCATTTTTATTTGGAA
CTCCGTAAAAATGTTTTCATTTTCAGCATTTTTGGTGTAGTCAGTAGATC
CTTGAATTATTTTTTTAATGCTCTTGATTTACCCTGTACTCTTTCGATTC
TCTACAATTTCTGAAAGTGGACGTATTGACTGATTTTACGTCACTTGCAA
CCAATCAGCAGTTGGATCCATGATGTAATGTCAGAAGACATTGCAATGGT
GCATATCATGAATATAATTTCTGAAACCGTGTTCTTTTCTTTTTAGGAAA
TGGGATTGCCAAACGAAGACACTGCCGAATATCAAATTGAAAAATATAAG
GGAGATAAAAGAATCGACGGAAAGTAGTAAAAATGTGATGGAGGAATGAT
ATGATAATCAAAACTTTTTTTCACAATAAAATTTTATTAAACATCTAATG
GAAATCTCTCTCGTTACATTTTTCTGCTCACTTCAGTTAACAATGCCTTA
TCAACCTTACTCCAAAACTCGAGATTTCTTTCTCCCACAAATTTGTATTC
CCCGTACGTATTCGAGTTATAGAGACTCCACTGTTTATTATAGCTAAGCG
CAGTTCAACATTTCTCCATGCTCTCGAGGGCGTTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006130	XLOC_006130	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000118	supercontig	sc0000118:322285..326070 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.6023	65.7702	49.0822	60.2195	53.6448	39.6839	50.8062	49.6789	44.5922	36.6698	61.2668	77.4116	75.8146	89.2093	58.0563	53.5326	31.4756	39.5131	53.8387	41.8271	42.1506	39.929	77.6543	69.9775	68.6851	84.5767	37.0523	55.9864	43.1195	48.3712

Blast

[Close]

BLAST of TCONS_00010921 vs. Swiss-Prot (Human)
Match: TMA16 (Translation machinery-associated protein 16 OS=Homo sapiens GN=TMA16 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.708e-24
Identity = 53/148 (35.81%), Postives = 84/148 (56.76%), Query Frame = 2

Query:  113 IHPKSRKASQLAKTIHHSEKIQQRKEDLNSKQSILKEKILWFKDILEEDKDRYSLAEVSNIVAQYINRFDERLNEINEQNELNKARSRHGRYHAAEEEAIKMVKTKEQELFSAGRFEAPDLTNTANVTYLRKWDCQTKTLPNIKLKNI 556
            IHP SRKA+Q+ +  H  EK ++ K +   + +++ EK+ WF++ L+  K RYS  +   ++ +Y+NRF   L +I   N +   R R GR H + E  IK    +E++ F     E PD+ N +N+   R+WD   K LPNIK++ I
Sbjct:   17 IHPYSRKAAQITREAHKQEKKEKLKNEKALRLNLVGEKLQWFQNHLDPQKKRYSKKDACELIERYLNRFSSELEQIELHNSI---RDRQGRRHCSRETVIKQTMERERQQFEGYGLEIPDILNASNLKTFREWDFDLKKLPNIKMRKI 161

The following BLAST results are available for this feature:

BLAST of TCONS_00010921 vs. Swiss-Prot (Human)

BLAST of TCONS_00010921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TMA16	2.708e-24	35.81	Translation machinery-associated protein 16 OS=Hom...	[more]

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TCONS_00010921 (transcript) - C. hemisphaerica